mRNA_P-littoralis_Contig1411.2.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig1411.2.1 vs. uniprot
Match: D7G4Y8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4Y8_ECTSI) HSP 1 Score: 109 bits (272), Expect = 5.390e-26 Identity = 49/105 (46.67%), Postives = 74/105 (70.48%), Query Frame = 1
Query: 1 VPDVDNPLKKLVFDRVRGIGVDILHQDTIGFKNKAKRMIRFLLNALNTDGSALVSGRLKLRSIIPPNAEPLGDVTTDGGFSALTGNQIWVLSSILPLLFRPIFAN 315
VP NPL ++ FDRV G G+D+LHQ + N K+++ F+L+AL++ GS +V GR R ++PPN P+ D+T+ GG++ALTG Q+W++SSI P L PIF++
Sbjct: 101 VPRYPNPLDEVTFDRVEGCGMDVLHQSAL---NAGKKIMTFVLDALDSAGSEIVRGRFAWRRMLPPNVSPMADITSAGGWAALTGQQLWLVSSIFPFLVAPIFSH 202
BLAST of mRNA_P-littoralis_Contig1411.2.1 vs. uniprot
Match: D7FZI4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZI4_ECTSI) HSP 1 Score: 109 bits (272), Expect = 1.030e-25 Identity = 49/105 (46.67%), Postives = 74/105 (70.48%), Query Frame = 1
Query: 1 VPDVDNPLKKLVFDRVRGIGVDILHQDTIGFKNKAKRMIRFLLNALNTDGSALVSGRLKLRSIIPPNAEPLGDVTTDGGFSALTGNQIWVLSSILPLLFRPIFAN 315
VP NPL ++ FDRV G G+D+LHQ + N K+++ F+L+AL++ GS +V GR R ++PPN P+ D+T+ GG++ALTG Q+W++SSI P L PIF++
Sbjct: 206 VPRYPNPLDEVTFDRVEGCGMDVLHQSAL---NAGKKIMTFVLDALDSAGSEIVRGRFAWRRMLPPNVSPMADITSAGGWAALTGQQLWLVSSIFPFLVAPIFSH 307
BLAST of mRNA_P-littoralis_Contig1411.2.1 vs. uniprot
Match: D7FWW9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWW9_ECTSI) HSP 1 Score: 99.8 bits (247), Expect = 3.090e-22 Identity = 46/105 (43.81%), Postives = 69/105 (65.71%), Query Frame = 1
Query: 1 VPDVDNPLKKLVFDRVRGIGVDILHQDTIGFKNKAKRMIRFLLNALNTDGSALVSGRLKLRSIIPPNAEPLGDVTTDGGFSALTGNQIWVLSSILPLLFRPIFAN 315
VP NP ++ FDRV G G+DILHQ + N K+++ F+++AL+ GS +V R ++PPN P+ D+T+ GG+SALTG Q+W++SS P L PIF++
Sbjct: 112 VPRYPNPQDEVAFDRVEGCGMDILHQSAL---NSGKKIMGFVMDALDPAGSEIVRARFAWCRMLPPNVSPMADITSAGGWSALTGQQLWLVSSSFPFLLAPIFSS 213
BLAST of mRNA_P-littoralis_Contig1411.2.1 vs. uniprot
Match: A0A6H5K975_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K975_9PHAE) HSP 1 Score: 80.9 bits (198), Expect = 1.400e-15 Identity = 43/105 (40.95%), Postives = 63/105 (60.00%), Query Frame = 1
Query: 1 VPDVDNPLKKLVFDRVRGIGVDILHQDTIGFKNKAKRMIRFLLNALNTDGSALVSGRLKLRSIIPPNAEPLGDVTTDGGFSALTGNQIWVLSSILPLLFRPIFAN 315
VP NPL ++ FDRV G G+DILHQ + N K+++ F+++AL+ GS +V D+T+ GG SALTG Q+W++SSI+P L PIF++
Sbjct: 50 VPRYPNPLDEVAFDRVEGCGMDILHQSAL---NSGKKIMGFVMDALDPAGSEIVP-----------------DITSAGGRSALTGQQLWLVSSIVPFLLAPIFSS 134
BLAST of mRNA_P-littoralis_Contig1411.2.1 vs. uniprot
Match: A0A6H5KPX4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPX4_9PHAE) HSP 1 Score: 75.5 bits (184), Expect = 3.770e-14 Identity = 31/73 (42.47%), Postives = 51/73 (69.86%), Query Frame = 1
Query: 97 NKAKRMIRFLLNALNTDGSALVSGRLKLRSIIPPNAEPLGDVTTDGGFSALTGNQIWVLSSILPLLFRPIFAN 315
N K+++ F+++AL+ G+ +V R R ++PPN P+ D+T+ GG SALTG Q+W+++SI P L PIF++
Sbjct: 186 NSGKKIMGFVMDALDPTGTEVVRARFAWRRMLPPNVSPIADITSAGGRSALTGQQLWLVASIFPFLLAPIFSS 258
BLAST of mRNA_P-littoralis_Contig1411.2.1 vs. uniprot
Match: D7FSA9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSA9_ECTSI) HSP 1 Score: 73.9 bits (180), Expect = 1.940e-13 Identity = 32/73 (43.84%), Postives = 52/73 (71.23%), Query Frame = 1
Query: 97 NKAKRMIRFLLNALNTDGSALVSGRLKLRSIIPPNAEPLGDVTTDGGFSALTGNQIWVLSSILPLLFRPIFAN 315
N K+++ F+L+AL++ S +V GR R ++P N P+ D+T+ GG++ALTG Q+W++SSI P L PIF++
Sbjct: 11 NAGKKIMTFVLDALDSAVSEIVRGRFAWRRMLPQNVLPMADITSAGGWAALTGQQLWLVSSIFPFLVAPIFSH 83
BLAST of mRNA_P-littoralis_Contig1411.2.1 vs. uniprot
Match: A0A6H5LGI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LGI1_9PHAE) HSP 1 Score: 70.5 bits (171), Expect = 6.370e-12 Identity = 37/99 (37.37%), Postives = 59/99 (59.60%), Query Frame = 1
Query: 19 PLKKLVFDRVRGIGVDILHQDTIGFKNKAKRMIRFLLNALNTDGSALVSGRLKLRSIIPPNAEPLGDVTTDGGFSALTGNQIWVLSSILPLLFRPIFAN 315
PL K++ G +I ++G K M F+++AL+ GS +V R R ++P N P+ D+T+ GG+SALTG Q+W++SSI P L P+F++
Sbjct: 579 PLMKIIRRLQNGCKAEI----SVGTKLTVTIM-GFVMDALDPAGSDIVRARFAWRRMLPRNVSPIADITSAGGWSALTGQQLWIVSSIFPFLLAPMFSS 672
BLAST of mRNA_P-littoralis_Contig1411.2.1 vs. uniprot
Match: D8LJH2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJH2_ECTSI) HSP 1 Score: 70.1 bits (170), Expect = 8.790e-12 Identity = 40/105 (38.10%), Postives = 61/105 (58.10%), Query Frame = 1
Query: 7 DVDNPLKKLV-FDRVRGIGVDILHQDTIGFKNKAKRMIRFLLNALN-TDGSALVSGRLKLRSIIPPNAEPLGDVTTDGGFSALTGNQIWVLSSILPLLFRPIFAN 315
+V+NP +K V + VR G+D+ HQD +N +++ + LL L+ G L+S K S+ PL D +DGGFSAL+G +W LSS+ L+FRP+ +
Sbjct: 269 EVENPFRKHVHLNMVRTFGIDLFHQDA---QNSLRKIFKRLLGGLSKAKGVPLLSCLAKDPSLRVAGTPPLRDFVSDGGFSALSGMDVWTLSSVALLVFRPVLRS 370
BLAST of mRNA_P-littoralis_Contig1411.2.1 vs. uniprot
Match: D7FWW6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWW6_ECTSI) HSP 1 Score: 67.8 bits (164), Expect = 5.750e-11 Identity = 40/105 (38.10%), Postives = 60/105 (57.14%), Query Frame = 1
Query: 7 DVDNPLKKLV-FDRVRGIGVDILHQDTIGFKNKAKRMIRFLLNALN-TDGSALVSGRLKLRSIIPPNAEPLGDVTTDGGFSALTGNQIWVLSSILPLLFRPIFAN 315
+V+NP +K V + VR G+D+ HQD +N ++ + LL L+ G L+S K S+ PL D +DGGFSAL+G +W LSS+ L+FRP+ +
Sbjct: 561 EVENPFRKHVHLNMVRTFGIDVFHQDA---QNSLLKIFKRLLGGLSKAKGVPLLSCLAKDPSLRVAGTPPLRDFVSDGGFSALSGMDVWRLSSVALLVFRPVLRS 662 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1411.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1411.2.1 >prot_P-littoralis_Contig1411.2.1 ID=prot_P-littoralis_Contig1411.2.1|Name=mRNA_P-littoralis_Contig1411.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=107bp VPDVDNPLKKLVFDRVRGIGVDILHQDTIGFKNKAKRMIRFLLNALNTDGback to top mRNA from alignment at P-littoralis_Contig1411:5717..6274- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig1411.2.1 ID=mRNA_P-littoralis_Contig1411.2.1|Name=mRNA_P-littoralis_Contig1411.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=558bp|location=Sequence derived from alignment at P-littoralis_Contig1411:5717..6274- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig1411:5717..6274- >mRNA_P-littoralis_Contig1411.2.1 ID=mRNA_P-littoralis_Contig1411.2.1|Name=mRNA_P-littoralis_Contig1411.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=321bp|location=Sequence derived from alignment at P-littoralis_Contig1411:5717..6274- (Pylaiella littoralis U1_48)back to top |