mRNA_P-littoralis_Contig1410.3.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1410.3.1
Unique NamemRNA_P-littoralis_Contig1410.3.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1410.3.1 vs. uniprot
Match: A0A6C0ITL0_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0ITL0_9ZZZZ)

HSP 1 Score: 52.4 bits (124), Expect = 1.710e-5
Identity = 29/87 (33.33%), Postives = 49/87 (56.32%), Query Frame = 1 
Query:   28 RWRVFKEQARRRNTAVSISFDEYSSFVRTACWYCGEFTYKGY-SGVERVQNAGTYETDNVVACCKTCNFMKGPLLSVKEFLRKVNHI 285
            R++ ++  A ++     +S DE  +    +C+YC      G+ +G++R  +   Y  DNVV CCK CN++KG L    +FL+ V+HI
Sbjct:  274 RFKYYERCAIQKGINFDLSKDECCNLFDKSCYYCKHKDDNGFLNGIDRKSSYLGYIKDNVVTCCKMCNYIKGSL-GHNDFLQIVDHI 359
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BLAST of mRNA_P-littoralis_Contig1410.3.1 vs. uniprot
Match: A0A3C2CGI7_9BACT (Uncharacterized protein n=1 Tax=Candidatus Nomurabacteria bacterium TaxID=2052152 RepID=A0A3C2CGI7_9BACT)

HSP 1 Score: 50.1 bits (118), Expect = 5.440e-5
Identity = 25/89 (28.09%), Postives = 50/89 (56.18%), Query Frame = 1 
Query:   31 WRVFKEQARRRNTAVSISFDEYSSFVRTACWYCGEFTYKGY-----------SGVERVQNAGTYETDNVVACCKTCNFMKGPLLSVKEF 264
            ++ + + A+ R  +  ++ +E+ S +  +C+YC E   + +           +G++R+ ++  Y T+NVV CCK CN+ K  + SV+EF
Sbjct:   83 FKTYADSAKNRCLSFELTKEEFVSLISKSCFYCNEPPSERWHEARGNGHMLSNGLDRIDSSKGYTTNNVVPCCKKCNYAKKQM-SVEEF 170
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1410.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6C0ITL0_9ZZZZ1.710e-533.33Uncharacterized protein (Fragment) n=1 Tax=viral m... [more]
A0A3C2CGI7_9BACT5.440e-528.09Uncharacterized protein n=1 Tax=Candidatus Nomurab... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1410contigP-littoralis_Contig1410:1152..1490 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size339
Hectar predicted targeting categoryother localisation
Exons1
Cds size339
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789663.36367-CDS-P-littoralis_Contig1410:1151..14901680789663.36367-CDS-P-littoralis_Contig1410:1151..1490Pylaiella littoralis U1_48CDSP-littoralis_Contig1410 1152..1490 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1410.3.1prot_P-littoralis_Contig1410.3.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1410 1152..1490 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1410.3.1

>prot_P-littoralis_Contig1410.3.1 ID=prot_P-littoralis_Contig1410.3.1|Name=mRNA_P-littoralis_Contig1410.3.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=113bp
KARKSDVLYRWRVFKEQARRRNTAVSISFDEYSSFVRTACWYCGEFTYKG
YSGVERVQNAGTYETDNVVACCKTCNFMKGPLLSVKEFLRKVNHIAREVL
DKNTLEVVGIQS*
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mRNA from alignment at P-littoralis_Contig1410:1152..1490-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1410.3.1 ID=mRNA_P-littoralis_Contig1410.3.1|Name=mRNA_P-littoralis_Contig1410.3.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=339bp|location=Sequence derived from alignment at P-littoralis_Contig1410:1152..1490- (Pylaiella littoralis U1_48)
AAAGCCAGAAAAAGTGATGTGCTGTACAGGTGGCGCGTGTTCAAGGAGCA
AGCTAGGAGGCGAAACACTGCGGTGTCGATTAGCTTCGATGAGTACAGCA
GCTTTGTACGCACAGCCTGCTGGTACTGCGGGGAATTTACATACAAGGGG
TACTCAGGCGTAGAACGTGTGCAGAACGCGGGAACGTACGAAACAGACAA
TGTTGTGGCCTGTTGCAAGACTTGCAACTTTATGAAAGGGCCACTACTGT
CGGTCAAAGAGTTCTTAAGGAAGGTCAACCACATCGCAAGAGAGGTGTTG
GACAAGAATACCTTGGAGGTTGTTGGAATTCAGAGCTAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1410:1152..1490-

>mRNA_P-littoralis_Contig1410.3.1 ID=mRNA_P-littoralis_Contig1410.3.1|Name=mRNA_P-littoralis_Contig1410.3.1|organism=Pylaiella littoralis U1_48|type=CDS|length=339bp|location=Sequence derived from alignment at P-littoralis_Contig1410:1152..1490- (Pylaiella littoralis U1_48)
AAAGCCAGAAAAAGTGATGTGCTGTACAGGTGGCGCGTGTTCAAGGAGCA
AGCTAGGAGGCGAAACACTGCGGTGTCGATTAGCTTCGATGAGTACAGCA
GCTTTGTACGCACAGCCTGCTGGTACTGCGGGGAATTTACATACAAGGGG
TACTCAGGCGTAGAACGTGTGCAGAACGCGGGAACGTACGAAACAGACAA
TGTTGTGGCCTGTTGCAAGACTTGCAACTTTATGAAAGGGCCACTACTGT
CGGTCAAAGAGTTCTTAAGGAAGGTCAACCACATCGCAAGAGAGGTGTTG
GACAAGAATACCTTGGAGGTTGTTGGAATTCAGAGCTAG
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