mRNA_P-littoralis_Contig141.59.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig141.59.1
Unique NamemRNA_P-littoralis_Contig141.59.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig141.59.1 vs. uniprot
Match: D7FIM0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIM0_ECTSI)

HSP 1 Score: 88.6 bits (218), Expect = 2.430e-19
Identity = 43/46 (93.48%), Postives = 45/46 (97.83%), Query Frame = 1 
Query:    1 ARLLFKTRYLVPCSLCGLNTKVSLTADNIMELVSTCMVVLEAPFPS 138
            ARLLFK RYL+PCSLCGLNTKVSLTADNIMELVSTCMVVLEAPFP+
Sbjct:  743 ARLLFKARYLIPCSLCGLNTKVSLTADNIMELVSTCMVVLEAPFPT 788
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BLAST of mRNA_P-littoralis_Contig141.59.1 vs. uniprot
Match: A0A836CKY6_9STRA (C2 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKY6_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 1.000e-6
Identity = 26/41 (63.41%), Postives = 34/41 (82.93%), Query Frame = 1 
Query:    1 ARLLFKTRYLVPCSLCGLNTKVSLTADNIMELVSTCMVVLE 123
            ARL FK R L PC+LCGL+ +VSLTADN++ELV+T + VL+
Sbjct: 1171 ARLFFKLRDLAPCALCGLSVQVSLTADNMVELVATGIAVLQ 1211
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig141.59.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FIM0_ECTSI2.430e-1993.48Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CKY6_9STRA1.000e-663.41C2 domain-containing protein n=1 Tax=Tribonema min... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig141contigP-littoralis_Contig141:386944..387984 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FIM0
Preferred nameC2CD5
PFAMsC2
Model size144
Max annot lvl2759|Eukaryota
KEGG koko:K20051
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000149,GO:0001505,GO:0001726,GO:0003674,GO:0005488,GO:0005509,GO:0005515,GO:0005543,GO:0005544,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005815,GO:0005829,GO:0005856,GO:0005886,GO:0005938,GO:0006810,GO:0006836,GO:0006886,GO:0006887,GO:0006906,GO:0006996,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007267,GO:0007268,GO:0007269,GO:0008104,GO:0008150,GO:0008286,GO:0008289,GO:0009719,GO:0009725,GO:0009987,GO:0010033,GO:0010243,GO:0010638,GO:0010827,GO:0010828,GO:0012506,GO:0015031,GO:0015630,GO:0015833,GO:0016020,GO:0016043,GO:0016050,GO:0016079,GO:0016192,GO:0017156,GO:0017157,GO:0017158,GO:0019905,GO:0023052,GO:0023061,GO:0030276,GO:0030659,GO:0031090,GO:0031252,GO:0031253,GO:0031256,GO:0031338,GO:0031340,GO:0031410,GO:0031982,GO:0032386,GO:0032388,GO:0032587,GO:0032868,GO:0032869,GO:0032870,GO:0032879,GO:0032880,GO:0032940,GO:0033036,GO:0033043,GO:0033157,GO:0034613,GO:0034762,GO:0034764,GO:0038028,GO:0042221,GO:0042886,GO:0042995,GO:0043167,GO:0043168,GO:0043169,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043232,GO:0043434,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044433,GO:0044444,GO:0044446,GO:0044459,GO:0044463,GO:0044464,GO:0045055,GO:0045184,GO:0046324,GO:0046326,GO:0046872,GO:0046903,GO:0046907,GO:0048284,GO:0048489,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048791,GO:0050789,GO:0050794,GO:0050896,GO:0051046,GO:0051049,GO:0051050,GO:0051128,GO:0051130,GO:0051179,GO:0051222,GO:0051223,GO:0051234,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051716,GO:0055085,GO:0060341,GO:0060627,GO:0061024,GO:0061025,GO:0065002,GO:0065007,GO:0065008,GO:0070201,GO:0070727,GO:0070887,GO:0071310,GO:0071375,GO:0071417,GO:0071495,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0071944,GO:0072657,GO:0072659,GO:0090087,GO:0090174,GO:0090313,GO:0090314,GO:0090316,GO:0097479,GO:0097480,GO:0097708,GO:0098590,GO:0098916,GO:0099003,GO:0099504,GO:0099536,GO:0099537,GO:0099568,GO:0099643,GO:0120025,GO:0120038,GO:1900076,GO:1900078,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1903305,GO:1903530,GO:1903533,GO:1903827,GO:1903829,GO:1904951,GO:1905475,GO:1905477,GO:1990778,GO:2001273,GO:2001275
Exons2
Evalue3.98e-20
EggNOG OGsKOG1031@1|root,KOG1031@2759|Eukaryota
Descriptioninsulin receptor signaling pathway via phosphatidylinositol 3-kinase
Cds size141
COG categoryS
BRITEko00000,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789662.0767365-CDS-P-littoralis_Contig141:386944..3870221680789662.0767365-CDS-P-littoralis_Contig141:386944..387022Pylaiella littoralis U1_48CDSP-littoralis_Contig141 386945..387022 -
1680789662.0880184-CDS-P-littoralis_Contig141:387921..3879841680789662.0880184-CDS-P-littoralis_Contig141:387921..387984Pylaiella littoralis U1_48CDSP-littoralis_Contig141 387922..387984 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig141.59.1prot_P-littoralis_Contig141.59.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig141 386945..387984 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig141.59.1

>prot_P-littoralis_Contig141.59.1 ID=prot_P-littoralis_Contig141.59.1|Name=mRNA_P-littoralis_Contig141.59.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=47bp
ARLLFKTRYLVPCSLCGLNTKVSLTADNIMELVSTCMVVLEAPFPST
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mRNA from alignment at P-littoralis_Contig141:386944..387984-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig141.59.1 ID=mRNA_P-littoralis_Contig141.59.1|Name=mRNA_P-littoralis_Contig141.59.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1041bp|location=Sequence derived from alignment at P-littoralis_Contig141:386944..387984- (Pylaiella littoralis U1_48)
GCGAGGCTGCTGTTCAAGACGAGATACCTGGTCCCCTGCTCGCTCTGCGG
TCTCAACACAAAGGTTAAGGGCGAGCTGATATCTACATACTTCGAAGTAT
ATATATTGTGGTTCGGGGGCTGGAAGACAAAAACACTTAATAAATAAAAA
AAAGAGTAGGTTTATTTCCCGCATTTCTAGACTCTCTTGTGCGGTGATCG
TTTCCCTTTCGTCAGTTGGAGAGATGCAGATGGGTTCTCGTGCGGCAGGC
AGGTGGACCCCCGCCCTCGAACCACCCCTGGAAAGCCTGATGCACGTTAA
CAAGGGGGAGGGGATTTCAAAAACTTTAATGCTCCCCGTCCATCTGTTGC
CGGCAACCCAACGGCCACGGTTGGTGTTGTGGGAGGCCAACGCCATACAT
ACCGGTAGCCAAAGGCCACGGCCTTTTTAATTTGTTTTGTCTGGCAGTTG
AAGTGTGGTCGCTAATTTGGATAAACTTGTTCAAGGGCAGAAAACCCTCC
AAGCCAGGGGGATAATCGCATCGCGTACGGGTGTGTACCGCAGTTCGGCA
CCCACGAGGTACATTTTTTAGCTGTGGTAGTATTCCTGGGCTGTCTTGTC
TCTAGAGTGGCAACAACCGGACAGCATACTGGTAACTCAAAAGTCATCGA
AAGCTGGTATCCACGTATGTGCAAAGGTTAAGGTTGTTCGCACACAAGAG
TGCGGAAGCGCCCCTCGCAAGCGGTTCGTAGCAGCCCCTCCCCTGCCATA
GAGTGTTTTCGTCACAAGAACGGTGCGTGGTCCAAAAAGGTCCTCCACCG
CAGAGCAAGGCAAGCAACAAAGGAGCACGCCCTGCTTGCCTTCGGCTGTC
AAACGCCTTGAGGACCGTCTGGTGAGTAGAGACATCGAGGCGCTGGGACT
CGAAGGCCGGCCACCCTCCGAACGCACCCCCCCCCCCCGTTTCCCGACTT
GCTCTTGAACAGGTGAGCTTGACCGCTGACAACATCATGGAGCTGGTTTC
TACGTGCATGGTGGTTCTGGAGGCGCCCTTCCCATCCACAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig141:386944..387984-

>mRNA_P-littoralis_Contig141.59.1 ID=mRNA_P-littoralis_Contig141.59.1|Name=mRNA_P-littoralis_Contig141.59.1|organism=Pylaiella littoralis U1_48|type=CDS|length=141bp|location=Sequence derived from alignment at P-littoralis_Contig141:386944..387984- (Pylaiella littoralis U1_48)
GCGAGGCTGCTGTTCAAGACGAGATACCTGGTCCCCTGCTCGCTCTGCGG
TCTCAACACAAAGGTGAGCTTGACCGCTGACAACATCATGGAGCTGGTTT
CTACGTGCATGGTGGTTCTGGAGGCGCCCTTCCCATCCACA
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