mRNA_P-littoralis_Contig141.49.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig141.49.1
Unique NamemRNA_P-littoralis_Contig141.49.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig141.49.1 vs. uniprot
Match: D7G4Z8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4Z8_ECTSI)

HSP 1 Score: 130 bits (326), Expect = 4.430e-30
Identity = 63/118 (53.39%), Postives = 82/118 (69.49%), Query Frame = 1 
Query:  124 MSALSKCSPLKRKQQGSNAAAANPRALFSGGNPDWPCLDSKDCPDGRLKVCLRKKDQKEYVTCDRNVWSDKDTCKVTLSMLLASKDHPHGCQLCLCDVGGYPSIGIPTDEKDDRGYTV 477
            M+ LSK SPLKRKQQ ++A    PRAL + G   WPC D     DG LKV ++KK+  +++TCD+N+W D+ +CKV+LS+L  S+DHPH C LCL DVGG PS+G  T E D RGY+ 
Sbjct:  624 MNTLSKASPLKRKQQQASAPIVKPRALLTLGVEGWPCPDDNST-DGLLKV-VKKKNGGDFLTCDQNIWKDETSCKVSLSLLKPSQDHPHECSLCLKDVGGTPSLGTDTGETDSRGYSA 739
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BLAST of mRNA_P-littoralis_Contig141.49.1 vs. uniprot
Match: A0A6H5JXZ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXZ5_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 3.250e-24
Identity = 59/145 (40.69%), Postives = 84/145 (57.93%), Query Frame = 1 
Query:  145 SPLKRKQQGSNAAAANPRALFSGGNPDWPCLDSKDCPDGRLKVCLRKKDQKEYVTCDRNVWSDKDTCKVTLSMLLASKDHPHGCQLCLCDVGGYPSIGIPTDEKDDRGYTVWENYHGVFSHCAGARSLDGKTFKNATVASGDIVG 579
            SP K+ +  S+ +    +  F  GNP WPC  S  C  G LK  + K +   +  CD+    D  TC+V+ S+L A    P  CQLCL  VGG PS+G+ + EK+ +G   W N H  ++ C GA++ DG+ +KNAT+A+GDIVG
Sbjct:    5 SPAKKIKSSSSTS----KRKFIAGNPLWPC-PSIVCVPGLLKA-VPKTNGGLFSPCDQKDSQDSTTCQVSCSILSARGSDPPICQLCLTSVGGTPSLGVLSGEKNSQGRDEWLNIHACWTICCGAKTSDGEKYKNATLATGDIVG 143
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BLAST of mRNA_P-littoralis_Contig141.49.1 vs. uniprot
Match: A0A6H5JLP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLP4_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 1.500e-22
Identity = 56/125 (44.80%), Postives = 75/125 (60.00%), Query Frame = 1 
Query:  205 FSGGNPDWPCLDSKDCPDGRLKVCLRKKDQKEYVTCDRNVWSDKDTCKVTLSMLLASKDHPHGCQLCLCDVGGYPSIGIPTDEKDDRGYTVWENYHGVFSHCAGARSLDGKTFKNATVASGDIVG 579
            F  GNP WPC  S  C DG LK   + K    +  CD+   +D +TC+V+ S L     +P  C+LCL  VGG PS+G+ + EK D+G   W N H V+  CAGA + DG  +KNAT+A+G+IVG
Sbjct:   22 FLAGNPLWPC-PSNYC-DGLLKKIPKTKGG-FFTPCDQKQSNDPNTCQVSCSFLSERGPNPVKCELCLTPVGGTPSLGVLSGEKTDQGRGEWLNIHAVWKLCAGATTSDGGKYKNATLATGEIVG 143
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig141.49.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G4Z8_ECTSI4.430e-3053.39Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JXZ5_9PHAE3.250e-2440.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JLP4_9PHAE1.500e-2244.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig141contigP-littoralis_Contig141:357429..358948 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G4Z8
PFAMsDimer_Tnp_hAT
Model size912
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue7.2e-33
EggNOG OGs2CZK4@1|root,2SARG@2759|Eukaryota
Cds size465
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789661.9967468-UTR-P-littoralis_Contig141:357428..3575511680789661.9967468-UTR-P-littoralis_Contig141:357428..357551Pylaiella littoralis U1_48UTRP-littoralis_Contig141 357429..357551 +
1680789662.0355778-UTR-P-littoralis_Contig141:358624..3589481680789662.0355778-UTR-P-littoralis_Contig141:358624..358948Pylaiella littoralis U1_48UTRP-littoralis_Contig141 358625..358948 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789662.0062265-CDS-P-littoralis_Contig141:357551..3577761680789662.0062265-CDS-P-littoralis_Contig141:357551..357776Pylaiella littoralis U1_48CDSP-littoralis_Contig141 357552..357776 +
1680789662.0150099-CDS-P-littoralis_Contig141:358172..3582991680789662.0150099-CDS-P-littoralis_Contig141:358172..358299Pylaiella littoralis U1_48CDSP-littoralis_Contig141 358173..358299 +
1680789662.0271778-CDS-P-littoralis_Contig141:358511..3586241680789662.0271778-CDS-P-littoralis_Contig141:358511..358624Pylaiella littoralis U1_48CDSP-littoralis_Contig141 358512..358624 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig141.49.1prot_P-littoralis_Contig141.49.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig141 357552..358624 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig141.49.1

>prot_P-littoralis_Contig141.49.1 ID=prot_P-littoralis_Contig141.49.1|Name=mRNA_P-littoralis_Contig141.49.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=155bp
MSALSKCSPLKRKQQGSNAAAANPRALFSGGNPDWPCLDSKDCPDGRLKV
CLRKKDQKEYVTCDRNVWSDKDTCKVTLSMLLASKDHPHGCQLCLCDVGG
YPSIGIPTDEKDDRGYTVWENYHGVFSHCAGARSLDGKTFKNATVASGDI
VGVS*
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mRNA from alignment at P-littoralis_Contig141:357429..358948+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig141.49.1 ID=mRNA_P-littoralis_Contig141.49.1|Name=mRNA_P-littoralis_Contig141.49.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1520bp|location=Sequence derived from alignment at P-littoralis_Contig141:357429..358948+ (Pylaiella littoralis U1_48)
CGGCACACGCCCCCTGATGACCAAACATCCAATTGCAAACATCACACATC
CCCACACTCATCCAAACATCACACAGCCCCACACCCATCACACAGATCAT
CAAACATTTAAAAGCGGAACAGAATGAGCGCATTGTCAAAGTGTTCACCA
CTTAAGCGGAAGCAGCAAGGTAGCAACGCGGCAGCGGCCAATCCTAGGGC
TCTCTTCTCGGGTGGCAACCCAGACTGGCCCTGTCTCGATTCGAAGGACT
GCCCTGACGGGCGTTTAAAGGTCTGCCTTCGCAAGAAGGACCAAAAGGAA
TACGTCACTTGCGACAGGAACGTCTGGAGCGACAAGGACACGTGCAAGGT
ATGACTAGGGTTGTGTCGGAAACGTGATCTGTGATTACCTTTCGCCCTTA
TTATCGTGATTGTGCTCTTTGTGCTCTTCAATCACGTCACGAATTTTGTA
GTGTTTGCATCTATGCCCTGTGTGTGCTGCCGTGTTTTATTTTGCAGTCT
CCCCGAGCACCACAGCCACCAGCACCTTTCCCATGAATCTGTTGCTCGTT
TGTTTCAGTGCTGCAGACCGTGTGTTGCCGGTAACACTGCAGACCGTGTG
TTGCCGGTTACAATGTGTCCGTGGATTGCACGTGCTTTACCGCCTGTTTG
TTAAGACTAATATTGTGAGCACCCTTTTTTATGCTTCGCACAATTTTCAT
TTTCAGCACTTCGTTTTTTTTGGTCATGCCTCCCACATTTCAAGGTCACG
CTGTCCATGCTGCTCGCCAGCAAGGATCACCCGCACGGTTGCCAGCTGTG
CCTATGTGACGTCGGGGGCTACCCTTCCATTGGTATCCCCACAGACGAGA
AGGACGACCGTGGCTACACCGGTGAGAGGTTGTTTCGTCCCGTTTATCCG
TCGAGGTCACGCTGTACTGCCACAAGCACCTTTCCCATGAATCTGTTGCT
TTTTTTTTCATGCCTCGCACAATTTTTCAAGGTCACGCTGTACAGCCAAC
AGCACCTTTCCCATTAATCTGTTGCTTTTTATTTCATGCTGCTTTTCTCG
TGTTTGTCCCGTTCGGTACCACATTTTTCGCAGTGTGGGAGAACTACCAC
GGCGTTTTCTCTCACTGCGCAGGAGCGAGGAGTCTCGACGGCAAGACGTT
CAAGAACGCAACCGTCGCTAGCGGTGACATCGTCGGCGTAAGTTGAACGG
TGGCATGTCATGTCCGCCATGATGACCGTCGTATATGCTGTTTTTTTGTC
ATGTGATAAATATATAGATTTTTCATTTTATATACGTATAATATATATGC
CGGAGTATATACGGAGTACAAAATATATACTCCGTATATAAGAGACCTGC
CCCGGTCTGTGTTTCCATTTTTTTTTAATATGCTGCTTTTACCCATGTAA
AAAGAAAAAAGAGCCGCCACCGTATAATATTTTTAAAATAATTACGTACG
CCTTTACACTGCTGTACCTCTCTTCTTCCTCTCGCTACCGTCAGCCGCTT
CCGCTCTCCATTTATATGCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig141:357429..358948+

>mRNA_P-littoralis_Contig141.49.1 ID=mRNA_P-littoralis_Contig141.49.1|Name=mRNA_P-littoralis_Contig141.49.1|organism=Pylaiella littoralis U1_48|type=CDS|length=465bp|location=Sequence derived from alignment at P-littoralis_Contig141:357429..358948+ (Pylaiella littoralis U1_48)
ATGAGCGCATTGTCAAAGTGTTCACCACTTAAGCGGAAGCAGCAAGGTAG
CAACGCGGCAGCGGCCAATCCTAGGGCTCTCTTCTCGGGTGGCAACCCAG
ACTGGCCCTGTCTCGATTCGAAGGACTGCCCTGACGGGCGTTTAAAGGTC
TGCCTTCGCAAGAAGGACCAAAAGGAATACGTCACTTGCGACAGGAACGT
CTGGAGCGACAAGGACACGTGCAAGGTCACGCTGTCCATGCTGCTCGCCA
GCAAGGATCACCCGCACGGTTGCCAGCTGTGCCTATGTGACGTCGGGGGC
TACCCTTCCATTGGTATCCCCACAGACGAGAAGGACGACCGTGGCTACAC
CGTGTGGGAGAACTACCACGGCGTTTTCTCTCACTGCGCAGGAGCGAGGA
GTCTCGACGGCAAGACGTTCAAGAACGCAACCGTCGCTAGCGGTGACATC
GTCGGCGTAAGTTGA
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