mRNA_P-littoralis_Contig141.3.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig141.3.1
Unique NamemRNA_P-littoralis_Contig141.3.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig141.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig141contigP-littoralis_Contig141:7053..7713 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size663
Hectar predicted targeting categoryother localisation
Exons1
Cds size648
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789660.2105503-CDS-P-littoralis_Contig141:7052..77001680789660.2105503-CDS-P-littoralis_Contig141:7052..7700Pylaiella littoralis U1_48CDSP-littoralis_Contig141 7053..7700 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789660.2193012-UTR-P-littoralis_Contig141:7700..77131680789660.2193012-UTR-P-littoralis_Contig141:7700..7713Pylaiella littoralis U1_48UTRP-littoralis_Contig141 7701..7713 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig141.3.1prot_P-littoralis_Contig141.3.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig141 7053..7700 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig141.3.1

>prot_P-littoralis_Contig141.3.1 ID=prot_P-littoralis_Contig141.3.1|Name=mRNA_P-littoralis_Contig141.3.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=216bp
MARGSMPSSNHNINNRNDSEESGDAEEGGGAAKMKSRSDKNGSPADSPAD
SPAAPSTPCAAPRSSCCSSCSSSSACATATATAATATAAAGGSSLRPAIE
AAEEALAAACVAGSPADSSSPPPDSPNNASGEESPPPTASSSNNIMRLFY
GTPAAAAGGGSRGGSSGAAGRPEEAAAAEMEEEEEAKEGGWSSRRRRRRR
SNSRPEEAAAPEAFRG
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mRNA from alignment at P-littoralis_Contig141:7053..7713-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig141.3.1 ID=mRNA_P-littoralis_Contig141.3.1|Name=mRNA_P-littoralis_Contig141.3.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=661bp|location=Sequence derived from alignment at P-littoralis_Contig141:7053..7713- (Pylaiella littoralis U1_48)
CGAGCTGAAGGGGATGGCGCGGGGCAGTATGCCTAGCAGCAACCACAACA
TCAACAACAGAAACGACAGCGAGGAGTCAGGGGACGCAGAAGAAGGCGGA
GGAGCGGCCAAAATGAAGTCCCGTAGTGATAAGAATGGCAGTCCCGCTGA
CAGTCCCGCTGACAGTCCGGCCGCCCCTTCTACACCTTGCGCAGCTCCTC
GTTCCTCTTGCTGCTCTTCTTGTTCTTCTTCTTCGGCTTGCGCCACCGCC
ACCGCCACCGCCGCTACCGCTACCGCTGCTGCGGGCGGTAGTAGCCTACG
GCCGGCAATCGAGGCAGCGGAGGAAGCCCTAGCCGCCGCTTGCGTGGCGG
GGTCACCCGCCGACAGTAGTTCGCCGCCTCCCGACAGTCCGAACAACGCC
AGCGGCGAGGAATCGCCACCGCCCACCGCCAGCAGCAGCAACAACATCAT
GCGGCTCTTTTACGGAACGCCCGCCGCCGCTGCCGGCGGCGGCAGCAGAG
GAGGGTCCTCCGGAGCGGCAGGGAGGCCGGAGGAGGCTGCCGCAGCGGAG
ATGGAGGAAGAGGAGGAGGCCAAGGAAGGCGGGTGGAGTAGCCGCCGCCG
CCGCCGCCGCCGAAGCAACTCAAGACCGGAAGAAGCGGCGGCGCCGGAAG
CGTTTCGAGGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig141:7053..7713-

>mRNA_P-littoralis_Contig141.3.1 ID=mRNA_P-littoralis_Contig141.3.1|Name=mRNA_P-littoralis_Contig141.3.1|organism=Pylaiella littoralis U1_48|type=CDS|length=648bp|location=Sequence derived from alignment at P-littoralis_Contig141:7053..7713- (Pylaiella littoralis U1_48)
ATGGCGCGGGGCAGTATGCCTAGCAGCAACCACAACATCAACAACAGAAA
CGACAGCGAGGAGTCAGGGGACGCAGAAGAAGGCGGAGGAGCGGCCAAAA
TGAAGTCCCGTAGTGATAAGAATGGCAGTCCCGCTGACAGTCCCGCTGAC
AGTCCGGCCGCCCCTTCTACACCTTGCGCAGCTCCTCGTTCCTCTTGCTG
CTCTTCTTGTTCTTCTTCTTCGGCTTGCGCCACCGCCACCGCCACCGCCG
CTACCGCTACCGCTGCTGCGGGCGGTAGTAGCCTACGGCCGGCAATCGAG
GCAGCGGAGGAAGCCCTAGCCGCCGCTTGCGTGGCGGGGTCACCCGCCGA
CAGTAGTTCGCCGCCTCCCGACAGTCCGAACAACGCCAGCGGCGAGGAAT
CGCCACCGCCCACCGCCAGCAGCAGCAACAACATCATGCGGCTCTTTTAC
GGAACGCCCGCCGCCGCTGCCGGCGGCGGCAGCAGAGGAGGGTCCTCCGG
AGCGGCAGGGAGGCCGGAGGAGGCTGCCGCAGCGGAGATGGAGGAAGAGG
AGGAGGCCAAGGAAGGCGGGTGGAGTAGCCGCCGCCGCCGCCGCCGCCGA
AGCAACTCAAGACCGGAAGAAGCGGCGGCGCCGGAAGCGTTTCGAGGC
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