mRNA_P-littoralis_Contig141.5.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig141.5.1
Unique NamemRNA_P-littoralis_Contig141.5.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig141.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig141contigP-littoralis_Contig141:11518..14298 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size794
Hectar predicted targeting categorychloroplast
Exons3
Cds size618
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789660.029905-UTR-P-littoralis_Contig141:11517..116921680789660.029905-UTR-P-littoralis_Contig141:11517..11692Pylaiella littoralis U1_48UTRP-littoralis_Contig141 11518..11692 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789660.0391319-CDS-P-littoralis_Contig141:11692..121371680789660.0391319-CDS-P-littoralis_Contig141:11692..12137Pylaiella littoralis U1_48CDSP-littoralis_Contig141 11693..12137 +
1680789660.049943-CDS-P-littoralis_Contig141:13622..137091680789660.049943-CDS-P-littoralis_Contig141:13622..13709Pylaiella littoralis U1_48CDSP-littoralis_Contig141 13623..13709 +
1680789660.0597284-CDS-P-littoralis_Contig141:14212..142981680789660.0597284-CDS-P-littoralis_Contig141:14212..14298Pylaiella littoralis U1_48CDSP-littoralis_Contig141 14213..14298 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig141.5.1prot_P-littoralis_Contig141.5.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig141 11693..14298 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig141.5.1

>prot_P-littoralis_Contig141.5.1 ID=prot_P-littoralis_Contig141.5.1|Name=mRNA_P-littoralis_Contig141.5.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=206bp
MAFNFLVVFLSSGVAAAAAAAAAAASNGVGSHHPTAQKTVIRDARRHGKG
LLRPLPFLPLLVASHMGSKRRAGQPPASCGNNEGLDYQQGGGSILTGQPL
LPALQLELGAVSSLRGGVKGPRKSLKAGLRSRKGKRRRGGKGGNDDSEGS
TAVAHTTCCLGKRSVQGIGAHGSENSSKVDLEALLQTVSGAEADDPFQDL
SALGDF
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mRNA from alignment at P-littoralis_Contig141:11518..14298+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig141.5.1 ID=mRNA_P-littoralis_Contig141.5.1|Name=mRNA_P-littoralis_Contig141.5.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2781bp|location=Sequence derived from alignment at P-littoralis_Contig141:11518..14298+ (Pylaiella littoralis U1_48)
GCGTCCGCCGGACTTGCTCGCTCCGCACAGCTTTTTGCTCGATCTGTCGT
GGGGAAGGAACAGGTGGATAGTGAAGAGTAGGACACCGACGGAATAAGCG
ACTGCGCTGCGCCGAGCCACAGCTGGGTAGGTCTCACGGACAAGCAAGAC
AAGCGAACTGGCACGCAGCAACGAGATGGCGTTCAACTTCCTTGTAGTGT
TCCTCTCGAGCGGCGTCGCCGCCGCCGCCGCCGCCGCTGCTGCTGCTGCT
TCTAATGGCGTCGGCTCCCACCACCCAACAGCACAGAAGACCGTCATCAG
AGATGCGCGACGGCATGGGAAGGGACTGCTGCGCCCGTTGCCGTTCCTGC
CCCTGCTTGTCGCTTCCCACATGGGCAGCAAGAGACGAGCAGGACAACCT
CCCGCAAGCTGCGGCAACAACGAGGGCTTGGATTATCAGCAAGGAGGTGG
ATCCATCCTAACGGGACAACCGCTGCTCCCCGCGCTGCAGCTTGAGCTGG
GTGCTGTATCGTCTTTGCGAGGGGGAGTAAAAGGCCCGCGAAAGTCCTTG
AAAGCCGGGCTTAGATCTAGGAAAGGGAAGCGGAGGAGGGGTGGGAAGGG
CGGCAATGACGATTCGGAAGGTGAGAGCTGTTTTTTTTTTTAAATAAAAA
TAAACGACACATGTTTTTTTTGTGTATTTGCTCGCCGCCGAGCAGCGTAA
CATATCGGCGCGTGTGTGCCCACGATAACGACACGTGTCGACGCGGGCAG
GGCAGGGGCAGGATTTGAGACAGGACAGGATGGCGTATCTCCATCGAAGC
GGGCGTTCCTCGTTCTTCGCTTTGGCATGTAGCGCAGCAAAGCTGCATTT
GTTGCGTCAATGATATGGTTCTTGACGAATGCCCCCCCCCCCCCGTTTTT
TGTCGTACCGTTACGCCTCCTGCCCCCCAGCTGGCACCACCTACAGCAGA
ATGCTCCTCACAGGAGGCTTGTCGTTTAGCCCTTTTTTTTCGCCGTACTT
TTCCCACGCATTTAGTACCCCGTACGACACAAAAAAAAATCCCAGCAATG
GTTGGATCTTTTTTAAGCAGTATTATTGTCCCGCACAATATTTCCATCTA
TTTATCTGTACTTCGTATGAAACATCTCCCAAAAACTTTGGACACTCGAG
ACGCTTCAAGGGAATGAAAATGTTTTTTGCTTAGGCGCTTGTGTGGTGGA
GTCACTCAACCCTTGACTTGAAGCCACCCCCTCAAATCATCCGATTTCGC
ACGGATTGTGATGGGAAATGAAGCCAAATGGCCTCAAGTTTTTTGCCTCC
GGCGGCGCCTCGCTAGCCAGCGGGGGCTCGCACAGCGAGCCACCTCGCGC
TTGCGAGCTCCCTCGCCTTTGCGAGCTCCCTCGCCTTTGCTCCATCGATC
ACTGGCTGCGCTCGCCCAATGTATCGGTATATCGGCTGCGCCGAATACCG
ATGTTTAAAACATCGACAAGCCCAATCGATTCACAACCCTCACTACTCAG
TATTTTCGCTGTAAACGGGGCACGAAAAGTCGAGACAACAAAGTTGGCGA
CAACAGTGCCTAGAGTGTCTCCCAAAGTGTCTCAAAAACCCTGCTAGTCC
GTAGAGGGGGTCAAATGACGCATGCCAACCTAAAATCCAAATTTGCTGAA
TTTTGGAATACTGCAAAGAGCACCCAAAACGTCACGAAACGAAAAAAAAG
GTTGGGGCCGAAACAACGAACGGCTAGAAGGAGGTGGTTGGGGCCTTACC
GCGTCACAATGTTGTGACTTAGAAGTCCGTATTATTTTCTCTCAATCCAA
GACAATAAGCTCCCTTCACTAGTTCAAGACAAGGCAATGAGCACGAAAAG
GCGCTCAAATAAGACCTGTGGTGTGAATTAAGAATTAAGCCAAGCCGGGG
TCACGGATAATGTCAGGAGGAGATATCATGTACGAGCGACGTGTATGTTG
GCTAGCTCAGATCTTCTGCTGGGGCTGTGCTATCGATGGCTAAAAATGTG
TTACAGCAGTCGAGATTCTGTCCGTATCTCGGCCCGAGATCAAACACCTT
GCATGGTCTTCCACTGCTGTACTCATCGCCATGGGCCCCAATCCCCGGAA
CCTAGGGTCTACAGCAGTTGCTCATACCACTTGCTGCCTGGGAAAGCGCT
CAGTTCAGGGAATTGGGGCCCATGGCAGCGAGAACAGCAGTagtgGAAAG
ATAATGTAAGATGTTTGGTTTTGGGCTGAGATGCGGACGATATCTGGGCT
GCTGCACGACGTACCTTCGACCACTGGTATCACAGCCCCTGTAGAAGCTC
TGAGATTGCCAACACGCACGTCGCCTCTACACGATGTCTTCTACTGAATT
CATTCGTGGCCCCTGCTTACTTCACGCGGGAAGGTCGGATTCTATTTTCG
ATGATTTTTGTACTGGATAAAGTTTTCTTTTTTTTTGGAAGGTTGGCTGG
GGTCCCTCAAAGGGGCGCACAAAGCAGAACAACGCAGTCTCGCCGCTCTC
AAACTGCCGAAAACGCAACAGCACACCAGCGCCAGCACCAGCACTAGCAC
CAGCTGAGTCCGACAGAGGTCCGCGTTATCATACGCTGGATTAGTTGGTT
TCGATAATTGAAGGTCCGCCTGGCCGTCGCTGCGTGTGTGTGTACGTGTG
TGTGTACGTGTGTGTGTCCGTGTGTGCGATGTACCCCCGGGACAGAAGTT
GACTTGGAGGCACTCCTGCAGACCGTGAGCGGGGCCGAAGCGGACGACCC
GTTTCAAGACCTGTCGGCCCTGGGCGACTTC
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Coding sequence (CDS) from alignment at P-littoralis_Contig141:11518..14298+

>mRNA_P-littoralis_Contig141.5.1 ID=mRNA_P-littoralis_Contig141.5.1|Name=mRNA_P-littoralis_Contig141.5.1|organism=Pylaiella littoralis U1_48|type=CDS|length=618bp|location=Sequence derived from alignment at P-littoralis_Contig141:11518..14298+ (Pylaiella littoralis U1_48)
ATGGCGTTCAACTTCCTTGTAGTGTTCCTCTCGAGCGGCGTCGCCGCCGC
CGCCGCCGCCGCTGCTGCTGCTGCTTCTAATGGCGTCGGCTCCCACCACC
CAACAGCACAGAAGACCGTCATCAGAGATGCGCGACGGCATGGGAAGGGA
CTGCTGCGCCCGTTGCCGTTCCTGCCCCTGCTTGTCGCTTCCCACATGGG
CAGCAAGAGACGAGCAGGACAACCTCCCGCAAGCTGCGGCAACAACGAGG
GCTTGGATTATCAGCAAGGAGGTGGATCCATCCTAACGGGACAACCGCTG
CTCCCCGCGCTGCAGCTTGAGCTGGGTGCTGTATCGTCTTTGCGAGGGGG
AGTAAAAGGCCCGCGAAAGTCCTTGAAAGCCGGGCTTAGATCTAGGAAAG
GGAAGCGGAGGAGGGGTGGGAAGGGCGGCAATGACGATTCGGAAGGGTCT
ACAGCAGTTGCTCATACCACTTGCTGCCTGGGAAAGCGCTCAGTTCAGGG
AATTGGGGCCCATGGCAGCGAGAACAGCAGTaAAGTTGACTTGGAGGCAC
TCCTGCAGACCGTGAGCGGGGCCGAAGCGGACGACCCGTTTCAAGACCTG
TCGGCCCTGGGCGACTTC
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