mRNA_P-littoralis_Contig141.4.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig141.4.1
Unique NamemRNA_P-littoralis_Contig141.4.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig141.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig141contigP-littoralis_Contig141:7730..11248 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size366
Hectar predicted targeting categoryother localisation
Exons2
Cds size318
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789659.9782226-UTR-P-littoralis_Contig141:7729..77761680789659.9782226-UTR-P-littoralis_Contig141:7729..7776Pylaiella littoralis U1_48UTRP-littoralis_Contig141 7730..7776 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789659.9885504-CDS-P-littoralis_Contig141:7776..78661680789659.9885504-CDS-P-littoralis_Contig141:7776..7866Pylaiella littoralis U1_48CDSP-littoralis_Contig141 7777..7866 -
1680789659.997234-CDS-P-littoralis_Contig141:11020..112481680789659.997234-CDS-P-littoralis_Contig141:11020..11248Pylaiella littoralis U1_48CDSP-littoralis_Contig141 11021..11248 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig141.4.1prot_P-littoralis_Contig141.4.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig141 7777..11248 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig141.4.1

>prot_P-littoralis_Contig141.4.1 ID=prot_P-littoralis_Contig141.4.1|Name=mRNA_P-littoralis_Contig141.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=106bp
SACCWTILTVNHSGQRPPIWLPSRHTHRLIEPGPGGTGFKEHTTQTDAHT
HTQRTPPARVRCFIRPSSVTGGAQHKKQREKYRRQQRSFSSASSPPSCSH
GAKDR*
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mRNA from alignment at P-littoralis_Contig141:7730..11248-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig141.4.1 ID=mRNA_P-littoralis_Contig141.4.1|Name=mRNA_P-littoralis_Contig141.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3519bp|location=Sequence derived from alignment at P-littoralis_Contig141:7730..11248- (Pylaiella littoralis U1_48)
TCTGCGTGCTGCTGGACGATACTAACTGTGAATCACTCTGGTCAGAGACC
ACCGATCTGGCTCCCCTCACGCCACACTCACCGGCTCATAGAACCGGGGC
CCGGAGGTACGGGTTTTAAGGAACACACAACGCAGACAGACGCACATACA
CACACGCAACGCACCCCGCCTGCACGCGTCCGGTGCTTCATTCGACCTTC
GTCGGTAACGGGAGGAGCACAACACAAGGTGAGGTTTGATCTGCTGCTAC
CTGCTGTAATATACGTGTATCGCACACGTACGACCTCGACACAGCACGCA
AGTTTGCCGTCCGTCTCTGAGTCGCCATCCATGATGATTACGTAAACGCA
CAGCCAGTCCCGACGCCCCAGTCGAGCGGTCTGTAGAAGTTTGGTTTAGT
GTGCGTGTGGTGTGCGCTTCGGAAGTGCCTCTTTACCAGGTTTACCGGTA
CTGCAGGTTTTACTGGAAGAATGGGGCGCACAGCACCACAGCAGCCGGTC
ATATCGTTTGACTGCCGTTTAGCTGCTGTACGGAGCAGTAGTCGTGCTCC
GTCTCTGCTGCTAGAGGTGCGGGACACCGGGTGCAGCAGTCGTAGCAGCC
TCTTACTTCGTCCTCTCTCCATAGTTGGCTGCTAGCATTTCCTCTTTGGG
CCTTCACTTGTAATACTTTTCATTAAATGTTTTTGGTTCTCTCGAAGTTT
TCAATGTTTTATCTTCCGATTGGGGATCTCTGGGTTGGGCGGCACCATAT
CATATCAAGAACACCAAAGTACCAGTCTGAACTGCAGCCGTCCTTCTTAC
AAGTACCATGTACTTCGAAGAGTCTACTGCTGTAGTACCGGTAATATAAT
ATTCCTATTTCATGTTTCCTCCTTTTTACTCGTACTTAGAACGGAACACG
ATAAAAGTACAAAAGTATGTCTGGTTTTGTCACCACAGGCTAGACCTCAG
CGGTTAACCAATGTGAGAAACAACAACAACAACAACAACAACAACAACAA
CAACACCAGCAGCAGCAGCAGCAACAACAACAACACCAGCAGCGGCAGTG
TGTTATTTCACCCCTCTATCGTTCGTTGTTGGGGTGAGTCATGTCATGTG
TGGATGATGAAATGAACAATGTCATGTCATACCTATGATAGAGTCGAGTC
GTTTAGTCCCTGGAATAAATCTCTGGACAAGAACCTCTCGTGCTGCACAA
CCCAAACGCGGAGAGCAGCTATCGGACGTACATCGAGCGCCTATCGTGGC
AGCAGCACTCCTGTCTGTACCATGGATTGGTCGGCATTTTCTTTTTTGGT
CTGTTACGACCATGAGACTAAATGTGTGTTCATCTCTCTCAAGACGACGA
TTTCCCCACTACTGTACTACATACGAAGTTCACATCATATGGTACGGCTG
TTGTATCACACTTCTTACTTCGTATGATGTGACAATGCTTCGAACTACGT
GTACTACAGGTGTTGTTGCAGCCGAATTCGCGTATTCGTCACTTTGTGCT
CTTGAACCCTTGCGTTAGTTCAGGGATTGAATACGAAATGCACCTACGAA
AGCTTGTGAGCGCAAACAACAACCTGGCACCTCCCCGACGACACCAACGA
AGCTAAGCTATCCACCTCTCCCGACGGCAAGGGTTGGGGTTGGGGTTGGC
ATAGAGGTTCTGTTGGGTTGGGTCCTGTTGTCGTTCGTGGGCGTTTATCT
AGGCAAAGGGGGGTGCCGTGCGATCATCCAAAGACAAAGAGGGGGTTTTG
ATTGATCTGCATGTCTACCCTCCAGAGATAGATACTAGATGCAGAGGAAC
GGGGGTTCGATTCCCGGTGAATGTGTTCCTTTGCTACTTTGAAAGCGGCT
ATGCTGTTAGTAAAATCAGATTCGGCTTCGCCGACGAGGGTAGGGACCGC
GGACCCCTGCTCGCGAGAAAAAAATCTCACGCATGTACCGCAGAAGGAAG
GTGGGGGTAACTCCTCCTGTGTTGACCTTCCTCCTGTGTGACCCCGTCGA
TGGGCCTAGCCTGTAGTTTGCAGACTAGTGTGCCAGAGAACATGGGATGA
CAACACACTAGGAGTATACCGGTATGTTCTATCTATCTCAGAGATAAATG
TATAAAATTGCCCATCTGAATGTTGCAAAATTTTCTTGTTTGTTTTTCCC
TGACAGCGATTTTTACGCGCGCACCGGTTGCGGCCCGTTTAGGAAAAAAA
AATAGAAAAATTAGGTACAGCTGTAGACAAGCTTACGAAATTACGAAATC
ACAATCCTCGGGGTTGTTCCACCTCGAAAGTTGGGTTACGGTATTTTTCA
ACACCTTCCGCGTTAGTGGCGACCCAAAACGATGCCGTAGTGGGATGCAT
ACACAAATCCACCTCCATCCCTGGAGATTACTACCGGTAAACAGGCGATC
TGGGTCACGCTACGAAGGTGTGCCATCGGTGTGATTTCCTTATTTTGTTG
TCGCAAGGCTTTCTCGGTATTCATGGAGGTACTCTCATTATCATTTATCT
CATCATTTTTTTCATGACTGCCCAACGGCGCCGCTGCCGACTTCTGACGT
TTACAGTCAGATTGGCTGATTGTAGGCGACCCGTCCAGGCCTGGATCGAT
CGCCGAAGTGCCGATCCCAAATTTCAAATTTTGCAATATCATAGCGGGGT
ACACGTTCTATATGTGATGTAACTGCTGTGCTGTGGTGGAGTATCGGCCG
ATTTTGGAGACTTCTTAAGATACCCCTGCGTCAACCTGAAACCAATTTTG
GAGTTCTGCGAATAGCACCCAAATCGTTACGAAAGATGGCCATCAGATCA
GTAGAACAGGGTTTTGGGGCGAAACAGTGGCAAGAGGATGGTCGTTGGGA
CGCTATTATCGCGGCAGGAACGAATGTTGTCATTCCGAACTCCGTATTAA
TCTAAGATGATAAGATGATAAGATGATAAGATGATAAGCTCCCTCACCTC
CGAATTCGAGACAAAACAAGTACAGTGAGCACGAGAGGGCGCTCACACAA
AGCCTGTGGTGTGAGTTAACTTAGAGTTACGAATGATATTCGTAGAAGGT
ATCTTGTAGGGGCAACGTGTATGTTGTGACGCTCAGATCCTCTGCTGGGT
CAATGCTTTGGGTGGTTGAATGTATATGTGAAACTGCGAAACCCCCGGGG
AGATCTCTCAATTATCCCTGGTATTCGCGGTAATTACCGGTGCGGTAACA
GGAAATGCTGATTTGCGGTAAATACCCGGTAGGTAACAAGACATATTCGG
GGTAACGGCGATCCTTGGTACAAAGCAGTTCAAAAACCGTCGGCATCTCG
GCCCGATATCAAACATCTTACATGATATTTTTCCACTGTTGTACTCGCCG
CCATGGGCCCCGATCTCCTGCACTTCGGGCAGAAGCAGAGGGAGAAATAC
CGGCGGCAGCAGCGGAGTTTTTCTTCCGCATCTTCTCCTCCCAGCTGCTC
CCACGGAGCAAAGGATCGGTAGCGGAAGAGCGGGAGCGGGAGCTGGGGGG
GAGACAGGGGCGGAGGCGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig141:7730..11248-

>mRNA_P-littoralis_Contig141.4.1 ID=mRNA_P-littoralis_Contig141.4.1|Name=mRNA_P-littoralis_Contig141.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=318bp|location=Sequence derived from alignment at P-littoralis_Contig141:7730..11248- (Pylaiella littoralis U1_48)
TCTGCGTGCTGCTGGACGATACTAACTGTGAATCACTCTGGTCAGAGACC
ACCGATCTGGCTCCCCTCACGCCACACTCACCGGCTCATAGAACCGGGGC
CCGGAGGTACGGGTTTTAAGGAACACACAACGCAGACAGACGCACATACA
CACACGCAACGCACCCCGCCTGCACGCGTCCGGTGCTTCATTCGACCTTC
GTCGGTAACGGGAGGAGCACAACACAAGAAGCAGAGGGAGAAATACCGGC
GGCAGCAGCGGAGTTTTTCTTCCGCATCTTCTCCTCCCAGCTGCTCCCAC
GGAGCAAAGGATCGGTAG
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