mRNA_P-littoralis_Contig1009.7.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1009.7.1
Unique NamemRNA_P-littoralis_Contig1009.7.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1009.7.1 vs. uniprot
Match: A0A6H5J9B3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9B3_9PHAE)

HSP 1 Score: 116 bits (290), Expect = 5.180e-31
Identity = 62/123 (50.41%), Postives = 75/123 (60.98%), Query Frame = 1 
Query:    1 RNGAVPVEYQVGNTLRWLAGGQMLDIKQGHVIAKSTAYQTAVRVIKAINACEALECRWPEKQTDYDSIAAGFNSRSTNGVIAKCVGAMDGLFRPHPEAELPGHT*AQLLLQWPQEGFRDELPG 369
            RNGA+PVEYQV  TLRWLAGG + +   GHVIA+STAY     VI A+NAC  L C+WPE + D    A  F +RS+ G   +  G+   L  P  +AE  G   AQL+LQ  QE  R ELPG
Sbjct:    5 RNGAIPVEYQVAMTLRWLAGGSIYECMDGHVIARSTAYHVTSTVINALNACPELNCKWPEGE-DAAGAAELFRNRSSYGCRPEVRGSHGWLVCPDDQAEREGGRRAQLMLQRAQERLRHELPG 126
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BLAST of mRNA_P-littoralis_Contig1009.7.1 vs. uniprot
Match: A0A6H5JJA1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJA1_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 1.260e-23
Identity = 50/92 (54.35%), Postives = 61/92 (66.30%), Query Frame = 1 
Query:    1 RNGAVPVEYQVGNTLRWLAGGQMLDIKQGHVIAKSTAYQTAVRVIKAINACEALECRWPEKQTDYDSIAAGFNSRSTNGVIAKCVGAMDGLF 276
            RNGA+PVEYQV  TLRWLAGG + +   GHVIA+STAY     VI A+NAC  L C+WPE + D     +   + +   V+ KCVGAMDGLF
Sbjct:  102 RNGAIPVEYQVAMTLRWLAGGSIYEYMDGHVIARSTAYHVTSTVINALNACPELNCKWPEGE-DLPEPPSFSATAALMDVVRKCVGAMDGLF 192
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BLAST of mRNA_P-littoralis_Contig1009.7.1 vs. uniprot
Match: A0A6H5K6M2_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6M2_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 4.430e-23
Identity = 51/92 (55.43%), Postives = 64/92 (69.57%), Query Frame = 1 
Query:    1 RNGAVPVEYQVGNTLRWLAGGQMLDIKQGHVIAKSTAYQTAVRVIKAINACEALECRWPEKQTDYDSIAAGFNSRSTNGVIAKCVGAMDGLF 276
            RNGA+PVE+Q+  TLR+LAGG + ++   +VIAKSTAY    RVI AIN    L C+WP    D ++ A  +  RSTNGVI +CVGAMDGLF
Sbjct:  102 RNGAIPVEFQLAMTLRFLAGGSVFEVMDSNVIAKSTAYAIVHRVIDAINQTRQLNCKWPYGD-DAEAQAELYRRRSTNGVIRRCVGAMDGLF 192
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BLAST of mRNA_P-littoralis_Contig1009.7.1 vs. uniprot
Match: A0A6H5JVS8_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVS8_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 2.300e-22
Identity = 48/92 (52.17%), Postives = 57/92 (61.96%), Query Frame = 1 
Query:    1 RNGAVPVEYQVGNTLRWLAGGQMLDIKQGHVIAKSTAYQTAVRVIKAINACEALECRWPEKQTDYDSIAAGFNSRSTNGVIAKCVGAMDGLF 276
            R GA+PVEYQ+  TLRWLAGG + +   GHVIA+STAY     VI A+NAC  L C+WPE + D               V+ KCVGAMDGLF
Sbjct:  102 RIGAIPVEYQIAMTLRWLAGGSIYECMDGHVIARSTAYHVTSTVINALNACPELNCKWPEARMD---------------VVRKCVGAMDGLF 178
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BLAST of mRNA_P-littoralis_Contig1009.7.1 vs. uniprot
Match: A0A6H5K540_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K540_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 2.180e-8
Identity = 27/38 (71.05%), Postives = 30/38 (78.95%), Query Frame = 1 
Query:    1 RNGAVPVEYQVGNTLRWLAGGQMLDIKQGHVIAKSTAY 114
            RNGA+PVEYQV  TLRWLAGG   +   GHVIA+STAY
Sbjct:  102 RNGAIPVEYQVAMTLRWLAGGSTYECMDGHVIARSTAY 139
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BLAST of mRNA_P-littoralis_Contig1009.7.1 vs. uniprot
Match: G4ZVV4_PHYSP (DDE Tnp4 domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZVV4_PHYSP)

HSP 1 Score: 54.3 bits (129), Expect = 3.010e-6
Identity = 32/93 (34.41%), Postives = 49/93 (52.69%), Query Frame = 1 
Query:    1 RNGAVPVEYQV--GNTLRWLAGGQMLDIKQGHVIAKSTAYQTAVRVIKAINACEALECRWPEKQTDYDSIAAGFNSRSTNGVIAKCVGAMDGL 273
            R G  P+  +V    TLR+LAGG  LDI+    ++ ++ Y+   + I AI  C  L  + P    + +  AA F   S+ GV+  CVG +DG+
Sbjct:   27 RTGVAPISEEVVLHCTLRYLAGGSYLDIRDVAQLSVASFYRCLNKGIFAILNCTELAIQLPTTPREIECAAAEFAKSSSEGVLDGCVGCVDGM 119
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BLAST of mRNA_P-littoralis_Contig1009.7.1 vs. uniprot
Match: A0A6H5L6B6_9PHAE (DDE Tnp4 domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6B6_9PHAE)

HSP 1 Score: 54.7 bits (130), Expect = 3.480e-6
Identity = 21/34 (61.76%), Postives = 29/34 (85.29%), Query Frame = 2 
Query:  269 GFFVRTLRPNSRDTHEPNSFYSGHKKGFGMNFQA 370
            G FVR ++P++++  EPN +Y+GHKKGFGMNFQA
Sbjct:  179 GLFVRMIKPSAKEVAEPNLYYNGHKKGFGMNFQA 212
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BLAST of mRNA_P-littoralis_Contig1009.7.1 vs. uniprot
Match: A0A6H5KD49_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD49_9PHAE)

HSP 1 Score: 50.8 bits (120), Expect = 1.680e-5
Identity = 19/31 (61.29%), Postives = 27/31 (87.10%), Query Frame = 2 
Query:  275 FVRTLRPNSRDTHEPNSFYSGHKKGFGMNFQ 367
            FVR ++P++++  EPN +Y+GHKKGFGMNFQ
Sbjct:   95 FVRMIKPSAKEVAEPNLYYNGHKKGFGMNFQ 125
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1009.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5J9B3_9PHAE5.180e-3150.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJA1_9PHAE1.260e-2354.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6M2_9PHAE4.430e-2355.43DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JVS8_9PHAE2.300e-2252.17DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5K540_9PHAE2.180e-871.05DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
G4ZVV4_PHYSP3.010e-634.41DDE Tnp4 domain-containing protein n=1 Tax=Phytoph... [more]
A0A6H5L6B6_9PHAE3.480e-661.76DDE Tnp4 domain-containing protein n=3 Tax=Ectocar... [more]
A0A6H5KD49_9PHAE1.680e-561.29Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1009contigP-littoralis_Contig1009:8585..8954 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog72019.SARC_10743T0
Model size370
Max annot lvl72019.SARC_10743T0|-
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.32e-08
EggNOG OGs2D5T8@1|root,2SZJJ@2759|Eukaryota
Cds size249
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789348.1215458-UTR-P-littoralis_Contig1009:8584..86391680789348.1215458-UTR-P-littoralis_Contig1009:8584..8639Pylaiella littoralis U1_48UTRP-littoralis_Contig1009 8585..8639 -
1680789348.1422634-UTR-P-littoralis_Contig1009:8888..89541680789348.1422634-UTR-P-littoralis_Contig1009:8888..8954Pylaiella littoralis U1_48UTRP-littoralis_Contig1009 8889..8954 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789348.1340103-CDS-P-littoralis_Contig1009:8639..88881680789348.1340103-CDS-P-littoralis_Contig1009:8639..8888Pylaiella littoralis U1_48CDSP-littoralis_Contig1009 8640..8888 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1009.7.1prot_P-littoralis_Contig1009.7.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1009 8640..8888 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1009.7.1

>prot_P-littoralis_Contig1009.7.1 ID=prot_P-littoralis_Contig1009.7.1|Name=mRNA_P-littoralis_Contig1009.7.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=83bp
MLDIKQGHVIAKSTAYQTAVRVIKAINACEALECRWPEKQTDYDSIAAGF
NSRSTNGVIAKCVGAMDGLFRPHPEAELPGHT*
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mRNA from alignment at P-littoralis_Contig1009:8585..8954-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1009.7.1 ID=mRNA_P-littoralis_Contig1009.7.1|Name=mRNA_P-littoralis_Contig1009.7.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=370bp|location=Sequence derived from alignment at P-littoralis_Contig1009:8585..8954- (Pylaiella littoralis U1_48)
CGCAACGGTGCGGTCCCTGTAGAGTACCAGGTCGGGAATACTCTGCGGTG
GTTGGCTGGTGGTCAAATGCTCGACATCAAGCAAGGCCATGTGATCGCGA
AGAGCACGGCGTACCAGACGGCCGTCCGTGTCATCAAGGCGATCAATGCC
TGTGAGGCGCTGGAATGCCGATGGCCCGAGAAACAGACGGATTACGACAG
CATCGCGGCCGGGTTCAACAGCCGCAGCACGAACGGTGTGATCGCCAAGT
GCGTGGGAGCCATGGACGGGCTTTTTCGTCCGCACCCTGAGGCCGAACTC
CCGGGACACACATGAGCCCAACTCCTTCTACAGTGGCCACAAGAAGGGTT
TCGGGATGAACTTCCAGGCA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1009:8585..8954-

>mRNA_P-littoralis_Contig1009.7.1 ID=mRNA_P-littoralis_Contig1009.7.1|Name=mRNA_P-littoralis_Contig1009.7.1|organism=Pylaiella littoralis U1_48|type=CDS|length=249bp|location=Sequence derived from alignment at P-littoralis_Contig1009:8585..8954- (Pylaiella littoralis U1_48)
ATGCTCGACATCAAGCAAGGCCATGTGATCGCGAAGAGCACGGCGTACCA
GACGGCCGTCCGTGTCATCAAGGCGATCAATGCCTGTGAGGCGCTGGAAT
GCCGATGGCCCGAGAAACAGACGGATTACGACAGCATCGCGGCCGGGTTC
AACAGCCGCAGCACGAACGGTGTGATCGCCAAGTGCGTGGGAGCCATGGA
CGGGCTTTTTCGTCCGCACCCTGAGGCCGAACTCCCGGGACACACATGA
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