mRNA_P-littoralis_Contig1403.4.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1403.4.1
Unique NamemRNA_P-littoralis_Contig1403.4.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1403.4.1 vs. uniprot
Match: A0A6H5KVV7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVV7_9PHAE)

HSP 1 Score: 133 bits (335), Expect = 9.870e-34
Identity = 97/192 (50.52%), Postives = 112/192 (58.33%), Query Frame = 2
Query:   11 MIESATTKLNPMR-----FGESSSLLYQIAARNLREYHGVPSMTAGSLEKTMYLLQLRPGRLVVQGIASQKLLEAETTTPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTQDDRSTKDGRAPANNKR---PIHASLVAAGIKLRPRETRPLLRALGVRPHRLVKLGLVQRETLLLSRHRG 562
            M+   TT  N M         + +LLY+  ARNLREYHGVPSMTA +LEKTM LL+LRPGRLVVQG+A +KLL+  +   D                             XXXXXXX   +  D+    +      NKR   P+HA+LVAAGI LRPRETRPLLRALGV PHRLVKLGLVQRE L  SR  G
Sbjct:    1 MVSINTTSNNAMNNETMDSSNNGTLLYKATARNLREYHGVPSMTADNLEKTMVLLRLRPGRLVVQGLAPEKLLKGFSAA-DAHADTTDSSGSSGSEVEPEQADDNQVSDDXXXXXXXSGDTEHDNIRKHNSLGFETNKRSKHPVHAALVAAGITLRPRETRPLLRALGVGPHRLVKLGLVQREELRRSRPGG 191          
BLAST of mRNA_P-littoralis_Contig1403.4.1 vs. uniprot
Match: A0A6H5K3J2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3J2_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 5.100e-24
Identity = 87/163 (53.37%), Postives = 101/163 (61.96%), Query Frame = 2
Query:    8 SMIESATTKLNPMRFGESSSLLYQIAARNLREYHGVPSMTAGSLEKTMYLLQLRPGRLVVQGIASQKLLEAETTTPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTQ---DDRSTKDGR--APANNKRPIHASLVAAGIKLRPRETRPLLR 481
            SM +  T K +  R  E + LLY+ AARNL EYHGVPSMTAG LEKTM LLQLRPGRLV QG+A ++LLE ++   D XXXXXXXXXXXXXXXX                       T    D  +T+D        +K PIHA  VAAG++LRPRETRPLLR
Sbjct:   30 SMAKCVTNKPSCKRAVEPNPLLYKAAARNLCEYHGVPSMTAGGLEKTMVLLQLRPGRLVAQGLAPKQLLEGKSAAGDAXXXXXXXXXXXXXXXXEVDPEQADNNQVSDDSNTNSRDGTDIEHDHVATQDSIDIETGASKHPIHAVFVAAGVQLRPRETRPLLR 192          
BLAST of mRNA_P-littoralis_Contig1403.4.1 vs. uniprot
Match: A0A6H5L2C8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2C8_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 3.210e-22
Identity = 97/156 (62.18%), Postives = 108/156 (69.23%), Query Frame = 2
Query:  122 MTAGSLEKTMYLLQLRPGRLVVQGIASQKLLEAETTTPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------STQDDRSTKDGRAPANNKRPIHASLVAAGIKLRPRETRPLLRALGVRPHRLVKLGLVQRETLLLSRHRG 562
            MTAG LEKTM LLQLRPGRLV QG+A ++LL+ ++   D XXXXXXXXXXXXXXXXXXX          XXXXXXXXX         +TQD    + G +    K PIHA  VAAG++LRPRETRPLLRALGV PHRLVKLGLVQRE    SR  G
Sbjct:    1 MTAGGLEKTMVLLQLRPGRLVAQGLAPKQLLDGKSAAGDAXXXXXXXXXXXXXXXXXXXPEQADNNPVSXXXXXXXXXXXXIEHDNIATQDSIDMEAGAS----KHPIHAVFVAAGVQLRPRETRPLLRALGVGPHRLVKLGLVQREEARRSRPGG 152          
BLAST of mRNA_P-littoralis_Contig1403.4.1 vs. uniprot
Match: A0A6H5KBH6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBH6_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 4.410e-20
Identity = 47/77 (61.04%), Postives = 56/77 (72.73%), Query Frame = 2
Query:    8 SMIESATTKLNPMRFGESSSLLYQIAARNLREYHGVPSMTAGSLEKTMYLLQLRPGRLVVQGIASQKLLEAETTTPD 238
            SM    T K +  R GES+ LLY+ AARNLREYHGVPS+T G LEKTM LLQLRPGRLV QG+A ++ LE ++   D
Sbjct:   36 SMTAFVTNKPSCKRMGESNPLLYKAAARNLREYHGVPSITVGGLEKTMVLLQLRPGRLVAQGLAPKQFLEGKSAADD 112          
BLAST of mRNA_P-littoralis_Contig1403.4.1 vs. uniprot
Match: A0A6H5JCG1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCG1_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 1.220e-18
Identity = 67/178 (37.64%), Postives = 87/178 (48.88%), Query Frame = 2
Query:    8 SMIESATTKLNPMRFGESSSLLYQIAARNLREYHGVPSMTAGSLEKTMYLLQLRPGRLVVQGIASQKLLEAETTTP-DXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTQDDRSTKDGRAPANNKRPIHASLVAAGIKLRPRETRPLLRALGVRPHRLVKLGLVQRET 538
            SM E  T+K +  R GE + L+++ AARNLREYHGVPS+T G LE TM LL+LRP RLV QG+A + LL+  +T   D                                           +    + RA   +K PI A  VA G++LRPRETRPLLR + +     V L +V   T
Sbjct:   20 SMTEFVTSKPSCKRTGEPNPLMFKAAARNLREYHGVPSITPGGLETTMVLLELRPARLVAQGLAPKILLKGNSTAGVDADSTDGSGGFEAEEEQANNQFSHDLSSNSSDGGDTGNDNIVTQNSIGFEARA---SKHPIQAVFVAVGVQLRPRETRPLLRGVVLLTSSTVALEVVATTT 194          
BLAST of mRNA_P-littoralis_Contig1403.4.1 vs. uniprot
Match: A0A6H5KI70_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI70_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 9.270e-18
Identity = 45/74 (60.81%), Postives = 52/74 (70.27%), Query Frame = 2
Query:   11 MIESATTKLNPMRFGESSSLLYQIAARNLREYHGVPSMTAGSLEKTMYLLQLRPGRLVVQGIASQKLLEAETTT 232
            M    T K +    GES+ LLY+ AARNLREYHGVPSMTAG LEKTM LLQLRPGRLV QG+A + +    + T
Sbjct:   33 MTACVTNKPSCKLTGESNPLLYKAAARNLREYHGVPSMTAGGLEKTMVLLQLRPGRLVAQGLAPKXIKNNNSNT 106          
BLAST of mRNA_P-littoralis_Contig1403.4.1 vs. uniprot
Match: A0A6H5KAY7_9PHAE (PB1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAY7_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 1.140e-17
Identity = 70/190 (36.84%), Postives = 90/190 (47.37%), Query Frame = 2
Query:   14 IESATTKLNPMRFGESSSLLYQIAARNLREYHGVPSMTAGSLEKTMYLLQLRPGRLVVQGIASQKLL---EAETTTP---------DXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTQDDRSTK--DGRAPANNKRPIHASLVAAGIKLRPRETRPLLRALGVRPHRLVKLGLVQRETL 541
            I +A  +    +  +S   LY+IAARNLREY+GVPSMT   L KT+  L+L P RLV QG+A + LL   +AET            D                                       S+ D+ + +  D  AP   +  IH + +A GI+LRPRE RPLL AL VRP RL KLGLV  + L
Sbjct:  115 ISAAGKENKATKMPDSEETLYKIAARNLREYNGVPSMTPPKLVKTLAFLKLNPQRLVKQGLAPKMLLARMKAETANNAKLSKVRLGDGKNNEDLAEWVAAGMEFMSVEDDKKEWNDGFVSVEPAETSSSDNGNEEENDDAAPEVKQNLIHKAFIAGGIQLRPREVRPLLVALDVRPWRLAKLGLVDGKDL 304          
BLAST of mRNA_P-littoralis_Contig1403.4.1 vs. uniprot
Match: A0A6H5JPU3_9PHAE (PB1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPU3_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 1.150e-17
Identity = 68/184 (36.96%), Postives = 84/184 (45.65%), Query Frame = 2
Query:   14 IESATTKLNPMRFGESSSLLYQIAARNLREYHGVPSMTAGSLEKTMYLLQLRPGRLVVQGIASQKLL-----EAETTTPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTQ--------DDRSTKDGRAPANNKRPIHASLVAAGIKLRPRETRPLLRALGVRPHRLVKLGLV 526
            I +A  +    R  +S   LY+IAARNLREY+GVPSMT   L KT+  L+L P RLV QG+A + LL     EA                                             S +        +D   K+  AP   K  IH + +A GI+LRPRE RPLL AL V P+RL KLGLV
Sbjct:  106 ISAAGKENKATRMPDSEEKLYKIAARNLREYNGVPSMTPPKLVKTLAFLKLNPQRLVKQGLAPKVLLARMKAEAANNAKVSKVPLGDGKNNEDLAESVAAGMELMSVEDGKKEWNDGFVSVEPAEISFPANDNEEKNDAAPEAKKNLIHKAFIAGGIQLRPREVRPLLVALDVLPYRLAKLGLV 289          
BLAST of mRNA_P-littoralis_Contig1403.4.1 vs. uniprot
Match: D8LN66_ECTSI (PB1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN66_ECTSI)

HSP 1 Score: 89.4 bits (220), Expect = 1.540e-17
Identity = 67/176 (38.07%), Postives = 81/176 (46.02%), Query Frame = 2
Query:   56 ESSSLLYQIAARNLREYHGVPSMTAGSLEKTMYLLQLRPGRLVVQGIASQKLL-----EAETTTPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTQ---------DDRSTKDGRAPANNKRPIHASLVAAGIKLRPRETRPLLRALGVRPHRLVKLGLVQRETL 541
            +S + LY+IAARNLREY+GVPSMT   L KT+  L+L P RLV QG+A + LL     EA                                             S +         D+    D  AP   K  IH + +A GI+LRPRE RPLL AL VRP RL KLGLV  + L
Sbjct:  118 DSEARLYKIAARNLREYNGVPSMTPPKLVKTLAFLKLNPQRLVKQGLAPKNLLPRMKAEAANNAKVSKVPLGDGKNNEDLAESVAAGMELMSLEDDKKEWNDGFVSVEPADTSSPDNDNEEKNDAVAPEVKKNLIHKAFIAGGIQLRPREVRPLLVALDVRPCRLAKLGLVDGKDL 293          
BLAST of mRNA_P-littoralis_Contig1403.4.1 vs. uniprot
Match: D8LN68_ECTSI (PB1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN68_ECTSI)

HSP 1 Score: 87.8 bits (216), Expect = 6.640e-17
Identity = 69/190 (36.32%), Postives = 85/190 (44.74%), Query Frame = 2
Query:   14 IESATTKLNPMRFGESSSLLYQIAARNLREYHGVPSMTAGSLEKTMYLLQLRPGRLVVQGIASQKLL-----EAETTTPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTQ---------DDRSTKDGRAPANNKRPIHASLVAAGIKLRPRETRPLLRALGVRPHRLVKLGLVQRETL 541
            I +A  +  P    +  + LY+IAARNLREY+GVPSMT   L KT+  L+L P RLV QG+A + LL     EA                                             S +         D+    D  AP   K  IH + +A GI+LRPRE RPLL AL VRP RL KLGLV  + L
Sbjct:   88 ISAAGKENKPANKPDPEARLYKIAARNLREYNGVPSMTPLKLVKTLAFLELNPQRLVKQGLAPKVLLARMKAEAANNAKVSKVPLGDGKNNEDLAESVAAGMELMSVEDDKKEWNDGFVSVEPADTSSPGNDNEEKNDAVAPEVKKNLIHKAFIAGGIQLRPREVRPLLVALDVRPCRLAKLGLVNGKDL 277          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1403.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A6H5KVV7_9PHAE9.870e-3450.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K3J2_9PHAE5.100e-2453.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L2C8_9PHAE3.210e-2262.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KBH6_9PHAE4.410e-2061.04Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JCG1_9PHAE1.220e-1837.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KI70_9PHAE9.270e-1860.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAY7_9PHAE1.140e-1736.84PB1 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JPU3_9PHAE1.150e-1736.96PB1 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LN66_ECTSI1.540e-1738.07PB1 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LN68_ECTSI6.640e-1736.32PB1 domain-containing protein n=1 Tax=Ectocarpus s... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1403contigP-littoralis_Contig1403:18506..19067 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size562
Hectar predicted targeting categoryother localisation
Exons1
Cds size552
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789658.9539065-UTR-P-littoralis_Contig1403:18505..185151680789658.9539065-UTR-P-littoralis_Contig1403:18505..18515Pylaiella littoralis U1_48UTRP-littoralis_Contig1403 18506..18515 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789658.9656315-CDS-P-littoralis_Contig1403:18515..190671680789658.9656315-CDS-P-littoralis_Contig1403:18515..19067Pylaiella littoralis U1_48CDSP-littoralis_Contig1403 18516..19067 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1403.4.1prot_P-littoralis_Contig1403.4.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1403 18516..19067 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1403.4.1

>prot_P-littoralis_Contig1403.4.1 ID=prot_P-littoralis_Contig1403.4.1|Name=mRNA_P-littoralis_Contig1403.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=184bp
MIESATTKLNPMRFGESSSLLYQIAARNLREYHGVPSMTAGSLEKTMYLL
QLRPGRLVVQGIASQKLLEAETTTPDNIVVDSSSSSSSSSEIEEENEEVI
SNSSRNSSSTDDNDDSTQDDRSTKDGRAPANNKRPIHASLVAAGIKLRPR
ETRPLLRALGVRPHRLVKLGLVQRETLLLSRHRG
back to top

mRNA from alignment at P-littoralis_Contig1403:18506..19067+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1403.4.1 ID=mRNA_P-littoralis_Contig1403.4.1|Name=mRNA_P-littoralis_Contig1403.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=562bp|location=Sequence derived from alignment at P-littoralis_Contig1403:18506..19067+ (Pylaiella littoralis U1_48)
TCACACTAGCATGATCGAGTCAGCAACGACCAAGCTCAACCCCATGCGCT TCGGAGAGTCGAGCTCTCTGCTTTACCAGATAGCAGCCCGCAACCTTCGC GAGTACCACGGCGTCCCGTCCATGACAGCCGGCAGCCTTGAGAAGACCAT GTATCTGCTCCAGCTTCGCCCTGGCCGCCTCGTGGTGCAGGGGATCGCTT CGCAGAAGCTCCTGGAAGCCGAAACTACGACGCCGGACAACATCGTCGTG GACAGCAGCAGCAGCAGCAGCAGCAGCTCCGAGATCGAGGAGGAGAACGA GGAGGTCATTTCGAACAGCAGCAGAAACAGCAGCAGCACAGACGACAACG ACGACAGCACGCAAGACGACCGTAGCACCAAGGACGGTAGAGCCCCCGCA AACAACAAGCGCCCCATCCATGCTTCTCTGGTGGCTGCCGGTATCAAGCT CCGGCCCCGCGAAACTAGGCCGCTTCTTCGTGCGCTGGGCGTCCGCCCTC ACCGCCTGGTCAAGCTCGGACTCGTTCAACGCGAGACCCTTCTTTTATCC AGGCATAGGGGC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig1403:18506..19067+

>mRNA_P-littoralis_Contig1403.4.1 ID=mRNA_P-littoralis_Contig1403.4.1|Name=mRNA_P-littoralis_Contig1403.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=552bp|location=Sequence derived from alignment at P-littoralis_Contig1403:18506..19067+ (Pylaiella littoralis U1_48)
ATGATCGAGTCAGCAACGACCAAGCTCAACCCCATGCGCTTCGGAGAGTC
GAGCTCTCTGCTTTACCAGATAGCAGCCCGCAACCTTCGCGAGTACCACG
GCGTCCCGTCCATGACAGCCGGCAGCCTTGAGAAGACCATGTATCTGCTC
CAGCTTCGCCCTGGCCGCCTCGTGGTGCAGGGGATCGCTTCGCAGAAGCT
CCTGGAAGCCGAAACTACGACGCCGGACAACATCGTCGTGGACAGCAGCA
GCAGCAGCAGCAGCAGCTCCGAGATCGAGGAGGAGAACGAGGAGGTCATT
TCGAACAGCAGCAGAAACAGCAGCAGCACAGACGACAACGACGACAGCAC
GCAAGACGACCGTAGCACCAAGGACGGTAGAGCCCCCGCAAACAACAAGC
GCCCCATCCATGCTTCTCTGGTGGCTGCCGGTATCAAGCTCCGGCCCCGC
GAAACTAGGCCGCTTCTTCGTGCGCTGGGCGTCCGCCCTCACCGCCTGGT
CAAGCTCGGACTCGTTCAACGCGAGACCCTTCTTTTATCCAGGCATAGGG
GC
back to top