mRNA_P-littoralis_Contig1403.2.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1403.2.1
Unique NamemRNA_P-littoralis_Contig1403.2.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1403.2.1 vs. uniprot
Match: A0A6H5JVD9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVD9_9PHAE)

HSP 1 Score: 147 bits (372), Expect = 3.540e-38
Identity = 72/97 (74.23%), Postives = 80/97 (82.47%), Query Frame = 1 
Query:  181 WGLSASETFQEAAGS*QRGENIITAKWVYNWKVDEFGNVVRAKARIVARGFAQREVVDFFETFSPCLYVASIRLLAAIACHLGWDLCHFDAEQAFVQ 471
            +GL+A  TF+E     QRG N+I+AKWVY+WK DEFG  VRAKAR+VARGFAQREVVDF ETFSPC  + SIRLLAAIAC L WDLCHFDAEQAFVQ
Sbjct: 1507 FGLNAVGTFEE-----QRGTNVISAKWVYSWKGDEFGYAVRAKARLVARGFAQREVVDFVETFSPCPSITSIRLLAAIACVLDWDLCHFDAEQAFVQ 1598
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BLAST of mRNA_P-littoralis_Contig1403.2.1 vs. uniprot
Match: A0A6H5KM90_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM90_9PHAE)

HSP 1 Score: 135 bits (340), Expect = 2.850e-36
Identity = 64/81 (79.01%), Postives = 70/81 (86.42%), Query Frame = 1 
Query:  229 QRGENIITAKWVYNWKVDEFGNVVRAKARIVARGFAQREVVDFFETFSPCLYVASIRLLAAIACHLGWDLCHFDAEQAFVQ 471
            +RG N+I+AKWVY+ K DEFG  VRAKAR+VARGFAQRE VDFFETFSPC  + SIRLLAAIAC L WDLCHFDAEQAFVQ
Sbjct:  157 ERGTNVISAKWVYSRKGDEFGYAVRAKARLVARGFAQREGVDFFETFSPCPSITSIRLLAAIACVLDWDLCHFDAEQAFVQ 237
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BLAST of mRNA_P-littoralis_Contig1403.2.1 vs. uniprot
Match: A0A6H5KAC2_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAC2_9PHAE)

HSP 1 Score: 142 bits (357), Expect = 3.720e-36
Identity = 70/97 (72.16%), Postives = 78/97 (80.41%), Query Frame = 1 
Query:  181 WGLSASETFQEAAGS*QRGENIITAKWVYNWKVDEFGNVVRAKARIVARGFAQREVVDFFETFSPCLYVASIRLLAAIACHLGWDLCHFDAEQAFVQ 471
            +GL+A  TF+E     QRG N+I+AKWVY+WK DEFG  VRAKAR+VARGFAQRE VDFFETFSPC  + SIRLLAAIAC L WD CHF AEQAFVQ
Sbjct: 1393 FGLNAVGTFEE-----QRGTNVISAKWVYSWKGDEFGYAVRAKARLVARGFAQREGVDFFETFSPCPSITSIRLLAAIACVLDWDSCHFYAEQAFVQ 1484
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BLAST of mRNA_P-littoralis_Contig1403.2.1 vs. uniprot
Match: A0A6H5KMK9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMK9_9PHAE)

HSP 1 Score: 138 bits (348), Expect = 6.750e-36
Identity = 64/80 (80.00%), Postives = 70/80 (87.50%), Query Frame = 1 
Query:  232 RGENIITAKWVYNWKVDEFGNVVRAKARIVARGFAQREVVDFFETFSPCLYVASIRLLAAIACHLGWDLCHFDAEQAFVQ 471
            RG N+I+AKWV++WK DEFG  VRAKAR+VARGFAQRE VDFFETFSPC  + SIRLLAAIAC L WDLCHFDAEQAFVQ
Sbjct:  144 RGTNVISAKWVFSWKRDEFGYAVRAKARLVARGFAQREGVDFFETFSPCPSITSIRLLAAIACVLDWDLCHFDAEQAFVQ 223
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BLAST of mRNA_P-littoralis_Contig1403.2.1 vs. uniprot
Match: A0A6H5KBJ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBJ6_9PHAE)

HSP 1 Score: 140 bits (353), Expect = 1.270e-35
Identity = 69/97 (71.13%), Postives = 78/97 (80.41%), Query Frame = 1 
Query:  181 WGLSASETFQEAAGS*QRGENIITAKWVYNWKVDEFGNVVRAKARIVARGFAQREVVDFFETFSPCLYVASIRLLAAIACHLGWDLCHFDAEQAFVQ 471
            +GL+A  TF+E      RG N+I+AKWVY+WK DEFG  VRAKAR+VARGFAQRE VDFFETFSPC  + SIRLLAAIAC L WDLC FDA+QAFVQ
Sbjct: 1275 FGLNAVGTFEE------RGTNVISAKWVYSWKGDEFGYAVRAKARLVARGFAQREGVDFFETFSPCPSITSIRLLAAIACVLDWDLCPFDAQQAFVQ 1365
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BLAST of mRNA_P-littoralis_Contig1403.2.1 vs. uniprot
Match: A0A6H5JV09_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV09_9PHAE)

HSP 1 Score: 140 bits (352), Expect = 1.680e-35
Identity = 65/80 (81.25%), Postives = 70/80 (87.50%), Query Frame = 1 
Query:  232 RGENIITAKWVYNWKVDEFGNVVRAKARIVARGFAQREVVDFFETFSPCLYVASIRLLAAIACHLGWDLCHFDAEQAFVQ 471
            RG N+I+AKWVY+WK DEFG  VRAKAR+VARGFAQRE VDFFETFSPC  + SIRLLAAIAC L WDLCHFDAEQAFVQ
Sbjct:  819 RGTNVISAKWVYSWKGDEFGYAVRAKARLVARGFAQREGVDFFETFSPCPSITSIRLLAAIACVLDWDLCHFDAEQAFVQ 898
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BLAST of mRNA_P-littoralis_Contig1403.2.1 vs. uniprot
Match: A0A6H5K0K7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0K7_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 5.700e-26
Identity = 54/64 (84.38%), Postives = 56/64 (87.50%), Query Frame = 1 
Query:  280 DEFGNVVRAKARIVARGFAQREVVDFFETFSPCLYVASIRLLAAIACHLGWDLCHFDAEQAFVQ 471
            DEFG  VRAKAR+VARGFAQRE VDFFETFSPC  + SIRLLAAIAC L WDLCHFDAEQAFVQ
Sbjct:  358 DEFGYAVRAKARLVARGFAQREGVDFFETFSPCPSITSIRLLAAIACVLDWDLCHFDAEQAFVQ 421
[Close]
BLAST of mRNA_P-littoralis_Contig1403.2.1 vs. uniprot
Match: A0A6H5KGK7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGK7_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 5.770e-26
Identity = 54/64 (84.38%), Postives = 56/64 (87.50%), Query Frame = 1 
Query:  280 DEFGNVVRAKARIVARGFAQREVVDFFETFSPCLYVASIRLLAAIACHLGWDLCHFDAEQAFVQ 471
            DEFG  VRAKAR+VARGFAQRE VDFFETFSPC  + SIRLLAAIAC L WDLCHFDAEQAFVQ
Sbjct:  345 DEFGYAVRAKARLVARGFAQREGVDFFETFSPCPSITSIRLLAAIACVLDWDLCHFDAEQAFVQ 408
[Close]
BLAST of mRNA_P-littoralis_Contig1403.2.1 vs. uniprot
Match: A0A6H5K793_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K793_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 5.880e-26
Identity = 54/64 (84.38%), Postives = 56/64 (87.50%), Query Frame = 1 
Query:  280 DEFGNVVRAKARIVARGFAQREVVDFFETFSPCLYVASIRLLAAIACHLGWDLCHFDAEQAFVQ 471
            DEFG  VRAKAR+VARGFAQRE VDFFETFSPC  + SIRLLAAIAC L WDLCHFDAEQAFVQ
Sbjct:  558 DEFGYAVRAKARLVARGFAQREGVDFFETFSPCPSITSIRLLAAIACVLDWDLCHFDAEQAFVQ 621
[Close]
BLAST of mRNA_P-littoralis_Contig1403.2.1 vs. uniprot
Match: A0A6H5JB00_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB00_9PHAE)

HSP 1 Score: 111 bits (277), Expect = 1.580e-25
Identity = 53/64 (82.81%), Postives = 55/64 (85.94%), Query Frame = 1 
Query:  280 DEFGNVVRAKARIVARGFAQREVVDFFETFSPCLYVASIRLLAAIACHLGWDLCHFDAEQAFVQ 471
            DEFG  VR KAR+VARGFAQRE VDFFETFSPC  + SIRLLAAIAC L WDLCHFDAEQAFVQ
Sbjct:  273 DEFGYAVRGKARLVARGFAQREGVDFFETFSPCPSITSIRLLAAIACVLDWDLCHFDAEQAFVQ 336
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1403.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JVD9_9PHAE3.540e-3874.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KM90_9PHAE2.850e-3679.01Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KAC2_9PHAE3.720e-3672.16Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5KMK9_9PHAE6.750e-3680.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KBJ6_9PHAE1.270e-3571.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JV09_9PHAE1.680e-3581.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K0K7_9PHAE5.700e-2684.38Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KGK7_9PHAE5.770e-2684.38Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K793_9PHAE5.880e-2684.38Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JB00_9PHAE1.580e-2582.81Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1403contigP-littoralis_Contig1403:7989..10108 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size472
Hectar predicted targeting categoryother localisation
Exons3
Cds size279
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789658.8566754-UTR-P-littoralis_Contig1403:7988..81801680789658.8566754-UTR-P-littoralis_Contig1403:7988..8180Pylaiella littoralis U1_48UTRP-littoralis_Contig1403 7989..8180 -
1680789658.903535-UTR-P-littoralis_Contig1403:10107..101081680789658.903535-UTR-P-littoralis_Contig1403:10107..10108Pylaiella littoralis U1_48UTRP-littoralis_Contig1403 10108..10108 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789658.866387-CDS-P-littoralis_Contig1403:8180..83231680789658.866387-CDS-P-littoralis_Contig1403:8180..8323Pylaiella littoralis U1_48CDSP-littoralis_Contig1403 8181..8323 -
1680789658.8754458-CDS-P-littoralis_Contig1403:8656..86991680789658.8754458-CDS-P-littoralis_Contig1403:8656..8699Pylaiella littoralis U1_48CDSP-littoralis_Contig1403 8657..8699 -
1680789658.888454-CDS-P-littoralis_Contig1403:10014..101071680789658.888454-CDS-P-littoralis_Contig1403:10014..10107Pylaiella littoralis U1_48CDSP-littoralis_Contig1403 10015..10107 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1403.2.1prot_P-littoralis_Contig1403.2.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1403 8181..10107 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1403.2.1

>prot_P-littoralis_Contig1403.2.1 ID=prot_P-littoralis_Contig1403.2.1|Name=mRNA_P-littoralis_Contig1403.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=93bp
MHPENKLLMVWTIHTCHAMHHVRRWVAHRTHRTHSTRTLSRCCATREDRE
IWESAMDAEFGGFRRRRLFRKRPDPSNEGKTSSRPNGCTIGR*
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mRNA from alignment at P-littoralis_Contig1403:7989..10108-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1403.2.1 ID=mRNA_P-littoralis_Contig1403.2.1|Name=mRNA_P-littoralis_Contig1403.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2120bp|location=Sequence derived from alignment at P-littoralis_Contig1403:7989..10108- (Pylaiella littoralis U1_48)
TATGCACCCAGAGAACAAACTGCTGATGGTGTGGACTATACACACATGTC
ATGCAATGCATCATGTGAGGAGATGGGTGGCTCATCGTACACATGTGTGT
GTTGGGTGGGTATTGTGTGTTTGCATCTTCTGCTTTATCTACAGCAGAGT
CGTAGTTTCTGGACGACGCCAGTCTGCAATCTTCTACCTGGTAATCGTTT
CTAATTTATGAAAGGACATTGTACAGAGAGACGAACTGATGCCCCGTTGT
GTTCTTTCAGACAGAGCCAACTGCTGTACCATCTTGAGGTCTTCAGAGTG
CTTGAACAAATACACATCGAACAAATGCAAAGAAAGGACGACGAATCCGC
CTTTGACTTCTACCGGTAGTTGGACCAGATCCACGGGTGGCTCATAGCAC
ATTAGTACATAGGTACATCCCGGCTGGGGTGCGCCCAAACACTTGTACCG
AAAGGTGTAGACTGGTGTCCAGAACACCATGCCAGGTAAATGATACTTCG
TACGAGTTGACGTCAGGCGTTTCGTCTTCGAACATTCAATGTTCTTCGGA
GGGCTGCAGGGAATCTCTTGCCCGGCCAAGTATCAGCTCTGGAGGGACGG
TGAGGGAGGGCGGCTGCCCCCGCGTGTTTTACAACAAGAAGATTGTATCA
CATCTCAATGATCATACATCAAGCATATTATATGCAGAGTACAGTATACT
TTGTATCTTTCGATCTCACGACCGCACAAACATTCACGCGTGTTATGTAC
CCCGCCCGGTGTAACCAACCCCCCACGGGGTTGCCCCCCCGTTCGCGCTT
GGTGCAAACATTACCTATCTTGACATGCCTGTCCGATGAGAAACCGGCGT
GCTATCGCCATCGCACGTTGCGGCTTTGGAGGTGGTGGGTACAAATGGTC
TCTATATCGATTACGGCATGCATGCATGATCATGAACACGCACACACACA
TACACACGCACGCACACCTCCGGAAGGAGGGGGAGGGGCGGGAGGGGGCG
GGGGCGGGCAGACTTTCTGACAGTAGCGTGCAGCGGTAGTTTTTCCAATG
TTATGGGCACGGCAGTCGGCTAGTGATTGGGTATCGTGAAGAATCCTTTA
CGGCCTCTGCTTTCGACCATCTCCGCGTCGACAATACTGCCAAATTTATC
TCGCATTTCATCATCATGGAACCAACACCCTCTGTCGACCACGCGGACGT
TCATTTGTATACCTTGCAGGAGGACGCGCCATCAAACTAATGGTTAATAT
GGAGAGACATGATGTACCTGGCGTGTACGCAACACCACAATGTTTTTTCC
ACCTTGAGCCTGTCTTCTCTCTCTCTTTCTATCTCTCCTGGTTCTTCCTT
GTGTTCGATTTTCGCCTTTTTGTTTGCCCTCTTCGCTGTCTTGTTTTTCT
TGTCTACAGAGAACGCATTCAACTCGGACTCTCTCCAGATGCTGTGCTAC
CAGTGAGTCCAAGAACTGGTCACGTTTTCGGAATGAAAAACCATTTTCGT
TTTTCCTTACACTCTTTCATTGAGCGATACTATGAATATAACATCCTCCA
CGGACATGCCCGTTGACGTTTACGGACTGGACTGTCCGTGGACAAAAATA
TTTTTAATGGGAGTTTTTGATTTGAGGAAAAACGTGAAGTACGTCGTGTG
CCTCCACCAAAGGTGTCTGATTCTCCTCCATTTTTTCGCTTTTTCTGATT
TCTTCCCCACTACGCTCTCTGGTGTCCCATCCTGAAGCCTTGAAAGCGGT
CCTACATTTTGTGCGTGTGTCGTTACCGATGGCAGGGGAGGACAGGGAGA
TCTGGGAAAGTGCGATGGACGCGGAGTTTGGGGGCTTTCGGCGTCGGAGA
CTTTTCAGGAAGCGGCCGGATCCTAGCAACGAGGGGAAAACATCATCACG
GCCAAATGGGTGTACAATTGGAAGGTAGACGAGTTTGGAAATGTCGTACG
TGCCAAAGCTAGAATAGTGGCTCGCGGGTTTGCGCAGCGCGAGGTTGTTG
ATTTCTTTGAGACTTTTTCCCCTTGCCTCTATGTTGCGAGCATCCGTCTG
TTGGCTGCTATCGCGTGTCACTTAGGGTGGGACCTCTGTCACTTTGATGC
CGAACAAGCGTTCGTTCAAT
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Coding sequence (CDS) from alignment at P-littoralis_Contig1403:7989..10108-

>mRNA_P-littoralis_Contig1403.2.1 ID=mRNA_P-littoralis_Contig1403.2.1|Name=mRNA_P-littoralis_Contig1403.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=279bp|location=Sequence derived from alignment at P-littoralis_Contig1403:7989..10108- (Pylaiella littoralis U1_48)
ATGCACCCAGAGAACAAACTGCTGATGGTGTGGACTATACACACATGTCA
TGCAATGCATCATGTGAGGAGATGGGTGGCTCATCGTACACATAGAACGC
ATTCAACTCGGACTCTCTCCAGATGCTGTGCTACCAGGGAGGACAGGGAG
ATCTGGGAAAGTGCGATGGACGCGGAGTTTGGGGGCTTTCGGCGTCGGAG
ACTTTTCAGGAAGCGGCCGGATCCTAGCAACGAGGGGAAAACATCATCAC
GGCCAAATGGGTGTACAATTGGAAGGTAG
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