mRNA_P-littoralis_Contig1402.2.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1402.2.1
Unique NamemRNA_P-littoralis_Contig1402.2.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1402.2.1 vs. uniprot
Match: A0A6H5J557_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J557_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 4.400e-20
Identity = 63/168 (37.50%), Postives = 83/168 (49.40%), Query Frame = 2 
Query:  242 KRGCVLYQCLATKRKIGTTNTEGRDAHAKQNYLDHTVPGFFAWWNKSCKLPIPTWLTPKLMGQSTLTDQTNRLYTVDGAIW---SKYSEAGKIIKRDFNLLWDSFRTADGELPSGQQETDAWGNLQDGLYYTWKKENEEVKMRNKRNKVAKNNPVVLTGGEGNQTLSG 736
            +     YQCL TKR+ GT +T+ RDAHA+ NY + TVP F  WW        P+WLT  LMG +T  D  +   TV    W   S Y  A +            F   DG+LPSG Q  D W NLQ  L++  ++     K     N  AK+ P+VLTG +  +T +G
Sbjct:   35 QNAAAYYQCLVTKREAGTMSTQQRDAHARTNYKNFTVPSFLCWWKTVVIQTPPSWLTQDLMGMTTGNDSGSTTPTV----WFGPSTYRVAVRSGGTSTESGTGDF-LVDGDLPSGMQAEDIWENLQLYLWFEDRRTAGRKKEVAAANARAKSQPIVLTGDDDGETEAG 197
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1402.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5J557_9PHAE4.400e-2037.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1402contigP-littoralis_Contig1402:4725..7031 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size860
Hectar predicted targeting categoryother localisation
Exons3
Cds size438
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789658.7284002-UTR-P-littoralis_Contig1402:4724..51451680789658.7284002-UTR-P-littoralis_Contig1402:4724..5145Pylaiella littoralis U1_48UTRP-littoralis_Contig1402 4725..5145 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789658.737372-CDS-P-littoralis_Contig1402:5145..51731680789658.737372-CDS-P-littoralis_Contig1402:5145..5173Pylaiella littoralis U1_48CDSP-littoralis_Contig1402 5146..5173 +
1680789658.7513416-CDS-P-littoralis_Contig1402:5754..58481680789658.7513416-CDS-P-littoralis_Contig1402:5754..5848Pylaiella littoralis U1_48CDSP-littoralis_Contig1402 5755..5848 +
1680789658.7611322-CDS-P-littoralis_Contig1402:6715..70311680789658.7611322-CDS-P-littoralis_Contig1402:6715..7031Pylaiella littoralis U1_48CDSP-littoralis_Contig1402 6716..7031 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1402.2.1prot_P-littoralis_Contig1402.2.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1402 5146..7031 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1402.2.1

>prot_P-littoralis_Contig1402.2.1 ID=prot_P-littoralis_Contig1402.2.1|Name=mRNA_P-littoralis_Contig1402.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=146bp
MGQSTLTDQTNRLYTVDGAIWSKYSEAGKIIKRDFNLLWDSFRTADGELP
SGQQETDAWGNLQDGLYYTWKKENEEVKMRNKRNKVAKNNPVVLTGGEGN
QTLSGESTAARDKAQQQSEEEVAAARQGATADSQSAPISTVSAVAA
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mRNA from alignment at P-littoralis_Contig1402:4725..7031+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1402.2.1 ID=mRNA_P-littoralis_Contig1402.2.1|Name=mRNA_P-littoralis_Contig1402.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2307bp|location=Sequence derived from alignment at P-littoralis_Contig1402:4725..7031+ (Pylaiella littoralis U1_48)
TTTAGGTAGCCGATAGGGGGTGCGAAGTAGTGCCGAATATGCACGGAGCC
TCTCCAACTGCATCCAGCCCAGTCGCCTTCGCTGCTGTGTACGCACACGC
CGGCAACACGCGCACGCCCTCTCTCAGCAGCATGGAGGAAATTTTTCCTC
TACCCCTGGTCACTAATGACCTCTCGGCTATGCTGCTCACAACCATCGGG
AATTGTTCCAAGGAGAACTCGAGGCATCTAGCGATGGTTCAAAACGCGGC
TGTGTACTGTATCAGTGCCTCGCCACGAAGCGCAAGATCGGCACCACCAA
CACCGAAGGACGGGATGCGCACGCAAAGCAGAACTACCTCGACCACACCG
TTCCTGGTTTCTTTGCCTGGTGGAATAAGTCCTGCAAGCTGCCGATTCCT
ACGTGGCTGACGCCGAAGCTCATGGGCCAGAGCACGCTGACTGACCAAAG
TGAGATGCGGAAAGATTTGTAGGGTGGAGCAGCTGCAGTAGCAGCTGCTG
CAGCGGCAGCAGTAACAGCAGTACCGGTACCAGTGTTTGCGTGCCACAAA
CTCTCAAGCAGGCTCACACCAGCTATTTTTCGCCTCTGTGCTGTTTCAGC
CTTCGATTGCGAGTTCATCTGCTGGCACATCCAATAGGGTTTGCTGCACA
CATCATATCTTGGAATAACTTTGTCGAGAAAGAAAAAGAAACAACAGCAG
TACTGCTGTATCTGATACGTATAATTTGCTCGTTCCCGAGGACAGCAGTA
CAACAGCAGCAGTATATACAAGACCACGCCTCTGCATCACGAACGACGCA
CATCCGACGAACCGTGTGCGTTGTGCGGCAACACTCGTCTACCTGATTTA
TTATTAATTATTTACATAGTTTTGTTTGTATTGCTGCCCAGTGCTTTGGC
TTGTTCATAGCTTGAAGCCCTTTGCCGAGGGAGACGCTCGAAACCATGCC
GACATATCAGTGCTTGACGAATAGCCCTCCACCCCGTTGGCCTCCTCGTT
GCGTCCCGTCACGTTGTTGCCTCCGTGCAGCTAACAGGCTGTACACAGTT
GATGGTGCTATCTGGAGCAAGTACTCGGAAGCTGGCAAAATTATTAAGAG
GGACTTCAACCTCCTCTGGGACAGGTGAGCGGTGATGACGGTGTTCCCAA
GTACTTTTGTAGACCTGTTTGCCAGATACAATCGACAAATCAAGATCGAG
GTTATAGGTCCTAGCGCAACAGACCTCGTGGTGTGATACGGATGACACGG
CAGGGTTTGCCTGCAGATCAACGCAATGAACATGAATGTAGGTACAGGCA
CCACCCGTTTGAGAAGCCGAAGACATCTATCTACTGATGAGTGACTAGCG
GTCATGTAGGCGATGGCGCAGGTCCGAGCCCGCATCATATACATGGTCGC
TGCAAGATGGGTGACACGCACTAAATACGACCGACAAACAGCAGCAGTAG
ACAGCATCAGGGTGCTCTGTTTTCTCGTCTGCTTCGCACGTTTGTGAGCC
AATGTTGAAGAATGGCTCCAAATACCACTAATGCCACAAAAGTTTTTTCC
GTTTTCTCGCAAAAGGGGTGTAAACCTCCGGTTGGTCGCTGCATATGTGC
CATGTCTCTTGTTGCGTTAAATGAGCTCCACGAGTAAACGTTACCGCTGC
AAGTGTTCCGCCAATTTCTGTGCGTTCTTGCGTACCCAACTTCACGCCCC
TAGCCGCCAAGGTATTTGCGTGTGTGCCAAACACTTTGGTCTGGCTCTCT
ACGCTCTCGTTCACGTGATGATTGGTGTACATTTTCTCTACTGGTAGTCG
ACTCGAGGATCTGACTTTTGTTTTGCACGTTTGACAATTCCAAGTACCAC
GCGCAGCTCATACTATCGTGCGTCGGAGCTCGGACCATCTATATCTCAAT
CTGTTGGTCGAAGACGACACGGCATGCTCGCCAGAAAATTTACTAAAGGT
TTTTTGTTGTCGAATCCTTTGCGTTCCGTGTTCGTTGCCAGTTTTAGGAC
AGCAGATGGTGAACTTCCTTCAGGACAGCAGGAGACCGACGCCTGGGGAA
ACCTGCAGGACGGGCTATACTACACCTGGAAGAAAGAAAACGAGGAGGTG
AAGATGCGGAACAAGCGAAACAAAGTGGCGAAGAATAATCCCGTGGTGTT
GACGGGAGGCGAGGGGAACCAAACACTGTCCGGGGAGTCGACGGCAGCCC
GGGATAAGGCACAGCAGCAGTCGGAGGAGGAGGTGGCTGCAGCAAGGCAA
GGTGCGACGGCGGATTCCCAATCCGCCCCAATATCCACCGTGTCGGCGGT
GGCGGCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1402:4725..7031+

>mRNA_P-littoralis_Contig1402.2.1 ID=mRNA_P-littoralis_Contig1402.2.1|Name=mRNA_P-littoralis_Contig1402.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=438bp|location=Sequence derived from alignment at P-littoralis_Contig1402:4725..7031+ (Pylaiella littoralis U1_48)
ATGGGCCAGAGCACGCTGACTGACCAAACTAACAGGCTGTACACAGTTGA
TGGTGCTATCTGGAGCAAGTACTCGGAAGCTGGCAAAATTATTAAGAGGG
ACTTCAACCTCCTCTGGGACAGTTTTAGGACAGCAGATGGTGAACTTCCT
TCAGGACAGCAGGAGACCGACGCCTGGGGAAACCTGCAGGACGGGCTATA
CTACACCTGGAAGAAAGAAAACGAGGAGGTGAAGATGCGGAACAAGCGAA
ACAAAGTGGCGAAGAATAATCCCGTGGTGTTGACGGGAGGCGAGGGGAAC
CAAACACTGTCCGGGGAGTCGACGGCAGCCCGGGATAAGGCACAGCAGCA
GTCGGAGGAGGAGGTGGCTGCAGCAAGGCAAGGTGCGACGGCGGATTCCC
AATCCGCCCCAATATCCACCGTGTCGGCGGTGGCGGCG
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