mRNA_P-littoralis_Contig1009.4.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1009.4.1
Unique NamemRNA_P-littoralis_Contig1009.4.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1009.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1009contigP-littoralis_Contig1009:6202..6878 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size677
Hectar predicted targeting categorysignal peptide
Exons1
Cds size354
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789348.0216668-UTR-P-littoralis_Contig1009:6201..64081680789348.0216668-UTR-P-littoralis_Contig1009:6201..6408Pylaiella littoralis U1_48UTRP-littoralis_Contig1009 6202..6408 -
1680789348.0446765-UTR-P-littoralis_Contig1009:6762..68781680789348.0446765-UTR-P-littoralis_Contig1009:6762..6878Pylaiella littoralis U1_48UTRP-littoralis_Contig1009 6763..6878 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789348.0340033-CDS-P-littoralis_Contig1009:6408..67621680789348.0340033-CDS-P-littoralis_Contig1009:6408..6762Pylaiella littoralis U1_48CDSP-littoralis_Contig1009 6409..6762 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1009.4.1prot_P-littoralis_Contig1009.4.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1009 6409..6762 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1009.4.1

>prot_P-littoralis_Contig1009.4.1 ID=prot_P-littoralis_Contig1009.4.1|Name=mRNA_P-littoralis_Contig1009.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=118bp
MGVLLICPLGLSAGRGRYARALGQWGNAAGNLFHVEERKLPRVDFLCLFG
FGTGFVCLKLICRPLTASSSNFSNAHTSICCVCWDIIHVLYIVAEVCCVD
CEEDQLPWIAFVKSVSS*
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mRNA from alignment at P-littoralis_Contig1009:6202..6878-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1009.4.1 ID=mRNA_P-littoralis_Contig1009.4.1|Name=mRNA_P-littoralis_Contig1009.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=677bp|location=Sequence derived from alignment at P-littoralis_Contig1009:6202..6878- (Pylaiella littoralis U1_48)
AACAACTAGGCATGGGGCGGCCGGCGCACAACATCTCTAGGAACAAAGAC
CGCAAGCGGTGAATCGTTGAACTGATTGTGTGGAGGGCACGGTGTTCGTC
GCAGTCTACGTTTGGGATGGGGGTATTGCTTATCTGTCCTCTCGGTTTGA
GTGCAGGTCGCGGTAGGTATGCGCGTGCGCTCGGCCAATGGGGTAATGCC
GCAGGTAACCTCTTCCACGTCGAGGAAAGGAAACTACCACGGGTGGACTT
TCTTTGTCTCTTTGGTTTTGGAACGGGCTTTGTGTGTCTCAAGTTGATTT
GTCGTCCCCTTACGGCTTCCTCTTCAAATTTTTCTAATGCTCACACCTCT
ATATGTTGTGTGTGTTGGGACATTATTCATGTATTGTATATTGTCGCGGA
GGTCTGCTGTGTTGATTGTGAGGAAGATCAATTACCTTGGATAGCCTTTG
TGAAGTCTGTGTCGTCCTAACTTTCACGCTTTCATTTTGTTTTATCTTAA
TATGCGAGTTTGTGGTATTAAGACCCGCTCATGCGTGGCGTGGCGGGATT
CGGATGCGGAATGCACCAGTGGAGGTTGTTGATGGTGTCTGGGAAATTCC
TTCCATGGTCCGCCCCCGAATGGACTTGTTCTGCACGGCAGCATCAGCGT
ACGTATGTGTGTGGCATGTGTTTATCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1009:6202..6878-

>mRNA_P-littoralis_Contig1009.4.1 ID=mRNA_P-littoralis_Contig1009.4.1|Name=mRNA_P-littoralis_Contig1009.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=354bp|location=Sequence derived from alignment at P-littoralis_Contig1009:6202..6878- (Pylaiella littoralis U1_48)
ATGGGGGTATTGCTTATCTGTCCTCTCGGTTTGAGTGCAGGTCGCGGTAG
GTATGCGCGTGCGCTCGGCCAATGGGGTAATGCCGCAGGTAACCTCTTCC
ACGTCGAGGAAAGGAAACTACCACGGGTGGACTTTCTTTGTCTCTTTGGT
TTTGGAACGGGCTTTGTGTGTCTCAAGTTGATTTGTCGTCCCCTTACGGC
TTCCTCTTCAAATTTTTCTAATGCTCACACCTCTATATGTTGTGTGTGTT
GGGACATTATTCATGTATTGTATATTGTCGCGGAGGTCTGCTGTGTTGAT
TGTGAGGAAGATCAATTACCTTGGATAGCCTTTGTGAAGTCTGTGTCGTC
CTAA
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