mRNA_P-littoralis_Contig1400.3.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1400.3.1
Unique NamemRNA_P-littoralis_Contig1400.3.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1400.3.1 vs. uniprot
Match: A0A6H5KFX7_9PHAE (Exonuclease 1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFX7_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 7.370e-10
Identity = 34/61 (55.74%), Postives = 43/61 (70.49%), Query Frame = 1 
Query:    4 VYVYANDSDLIVLGVRALLYEASERNR-QLSGVYINTDFIFKPPEMAFRRNTTAHAFLRLL 183
            VYVYANDSDLIVLGVR+LL++    +   L+GV I +  IF+PPE AF  +   +AFLR L
Sbjct:  175 VYVYANDSDLIVLGVRSLLWDVRGTDAGNLTGVCIRSRLIFQPPEWAFAIDAEGYAFLRQL 235
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BLAST of mRNA_P-littoralis_Contig1400.3.1 vs. uniprot
Match: A0A6H5KVY6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVY6_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 2.060e-7
Identity = 31/62 (50.00%), Postives = 39/62 (62.90%), Query Frame = 1 
Query:    1 NVYVYANDSDLIVLGVRALLYEASERNR-QLSGVYINTDFIFKPPEMAFRRNTTAHAFLRLL 183
            NVYVYANDSDL VLGVR LL E  +  R +L G  +    +F+P   +F R+  AH +LR L
Sbjct:  380 NVYVYANDSDLTVLGVRDLLVEVVKNTRGELIGRCVRQRLLFQPTAWSFLRSGDAHGWLRQL 441
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BLAST of mRNA_P-littoralis_Contig1400.3.1 vs. uniprot
Match: D7G0K2_ECTSI (Exonuclease 1 n=3 Tax=Ectocarpus TaxID=2879 RepID=D7G0K2_ECTSI)

HSP 1 Score: 54.7 bits (130), Expect = 3.850e-7
Identity = 31/62 (50.00%), Postives = 39/62 (62.90%), Query Frame = 1 
Query:    1 NVYVYANDSDLIVLGVRALLYEASERNR-QLSGVYINTDFIFKPPEMAFRRNTTAHAFLRLL 183
            NVYVYANDSDL VLGVR LL E  +  R +L G  +    +F+P   +F R+  AH +LR L
Sbjct:  135 NVYVYANDSDLTVLGVRDLLVEVVKNARGELVGRCVRQRLLFQPTAWSFLRSGDAHGWLRQL 196
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BLAST of mRNA_P-littoralis_Contig1400.3.1 vs. uniprot
Match: D7G4G5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4G5_ECTSI)

HSP 1 Score: 52.4 bits (124), Expect = 2.500e-6
Identity = 30/62 (48.39%), Postives = 38/62 (61.29%), Query Frame = 1 
Query:    1 NVYVYANDSDLIVLGVRALLYEASERNR-QLSGVYINTDFIFKPPEMAFRRNTTAHAFLRLL 183
            NVYVYANDSDL VLGVR  L E  +  R +L G  +    +F+P   +F R+  AH +LR L
Sbjct:  108 NVYVYANDSDLTVLGVRDRLVEVVKNARGELVGRSVRQRLLFQPTAWSFLRSGDAHGWLRQL 169
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1400.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KFX7_9PHAE7.370e-1055.74Exonuclease 1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
A0A6H5KVY6_9PHAE2.060e-750.00Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D7G0K2_ECTSI3.850e-750.00Exonuclease 1 n=3 Tax=Ectocarpus TaxID=2879 RepID=... [more]
D7G4G5_ECTSI2.500e-648.39Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1400contigP-littoralis_Contig1400:8123..8307 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G0K2
PFAMsXPG_I,XPG_N
Model size185
Max annot lvl2759|Eukaryota
KEGG koko:K10746
KEGG Pathwayko03430,map03430
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.31e-08
EggNOG OGsCOG0258@1|root,KOG2518@2759|Eukaryota
Description5'-3' exodeoxyribonuclease activity
Cds size183
COG categoryL
BRITEko00000,ko00001,ko01000,ko03032,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789658.6078866-CDS-P-littoralis_Contig1400:8122..83051680789658.6078866-CDS-P-littoralis_Contig1400:8122..8305Pylaiella littoralis U1_48CDSP-littoralis_Contig1400 8123..8305 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1400.3.1prot_P-littoralis_Contig1400.3.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1400 8123..8305 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1400.3.1

>prot_P-littoralis_Contig1400.3.1 ID=prot_P-littoralis_Contig1400.3.1|Name=mRNA_P-littoralis_Contig1400.3.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=61bp
NVYVYANDSDLIVLGVRALLYEASERNRQLSGVYINTDFIFKPPEMAFRR
NTTAHAFLRLL
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mRNA from alignment at P-littoralis_Contig1400:8123..8307+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1400.3.1 ID=mRNA_P-littoralis_Contig1400.3.1|Name=mRNA_P-littoralis_Contig1400.3.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=185bp|location=Sequence derived from alignment at P-littoralis_Contig1400:8123..8307+ (Pylaiella littoralis U1_48)
AACGTGTATGTTTACGCGAACGACTCTGATCTCATCGTCTTGGGCGTAAG
GGCGTTGCTATATGAAGCGTCCGAGCGCAACCGCCAGCTGAGCGGAGTGT
ACATCAACACTGACTTCATTTTCAAACCTCCAGAGATGGCATTCAGAAGA
AACACTACAGCTCATGCGTTCCTTCGCCTGCTGCA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1400:8123..8307+

>mRNA_P-littoralis_Contig1400.3.1 ID=mRNA_P-littoralis_Contig1400.3.1|Name=mRNA_P-littoralis_Contig1400.3.1|organism=Pylaiella littoralis U1_48|type=CDS|length=183bp|location=Sequence derived from alignment at P-littoralis_Contig1400:8123..8307+ (Pylaiella littoralis U1_48)
AACGTGTATGTTTACGCGAACGACTCTGATCTCATCGTCTTGGGCGTAAG
GGCGTTGCTATATGAAGCGTCCGAGCGCAACCGCCAGCTGAGCGGAGTGT
ACATCAACACTGACTTCATTTTCAAACCTCCAGAGATGGCATTCAGAAGA
AACACTACAGCTCATGCGTTCCTTCGCCTGCTG
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