mRNA_P-littoralis_Contig140.90.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig140.90.1
Unique NamemRNA_P-littoralis_Contig140.90.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig140.90.1 vs. uniprot
Match: D7G6N7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6N7_ECTSI)

HSP 1 Score: 124 bits (311), Expect = 2.070e-29
Identity = 72/146 (49.32%), Postives = 99/146 (67.81%), Query Frame = 2 
Query:  884 RFDTYRALICRFLALCLVALAAPMADAARAEDAEVEKAKEAVS-GMVVEGVKEDIGVGE---RKGRKRSGKAGKPNFATTGVRQKWDQCVGMDVDEAMDLISEERPDLKKVIKVKEGSMVTMDMRSDRVRLFYNAQGVVTRAPKVG 1309
            RF ++       LA  L +  APMA+A  A +A +EKAKEA S G+  EGV E++ VGE       ++  K  KP  AT GV+Q W +CVGMDV+EA+++I   RPDL+K+ KV EG+MVTMDMR+DRVR++Y+ + +VTR P+VG
Sbjct:    2 RFASFPKATALLLAATLPS--APMAEAGHAGEAGMEKAKEASSRGLAEEGVTEEVMVGELPRSHPHEKEKKQRKPRMATMGVQQTWKECVGMDVEEAVEMIKAARPDLRKITKVPEGAMVTMDMRTDRVRIYYDKENIVTRPPRVG 145
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BLAST of mRNA_P-littoralis_Contig140.90.1 vs. uniprot
Match: A0A7S2U095_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2U095_9EUKA)

HSP 1 Score: 65.5 bits (158), Expect = 4.200e-9
Identity = 33/68 (48.53%), Postives = 47/68 (69.12%), Query Frame = 2 
Query: 1118 RQKWDQCVGMDVDEAMDLISEERPDLKKVIKVKEGSMVTMDMRSDRVRLFYNAQG----VVTRAPKVG 1309
            +  W + VG+D ++A+ +I  ERPDLKKV+ +  GSMVTMD R DRVR+F + +     VV +AP+VG
Sbjct:   53 KDHWPELVGVDAEKAVRIIKSERPDLKKVLSLPIGSMVTMDYRLDRVRVFVSERSGLNSVVAQAPRVG 120
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BLAST of mRNA_P-littoralis_Contig140.90.1 vs. uniprot
Match: A0A2P5ECQ8_TREOI (Proteinase inhibitor n=2 Tax=Cannabaceae TaxID=3481 RepID=A0A2P5ECQ8_TREOI)

HSP 1 Score: 62.4 bits (150), Expect = 1.650e-8
Identity = 30/69 (43.48%), Postives = 43/69 (62.32%), Query Frame = 2 
Query: 1103 ATTGVRQKWDQCVGMDVDEAMDLISEERPDLKKVIKVKEGSMVTMDMRSDRVRLFYNAQGVVTRAPKVG 1309
            A    +  W + VG+  + A   I +E P +K VI V EGS VT+++R DRVRL+ + QG+VTR P +G
Sbjct:   10 AAASNKSSWPELVGIQSEVAEKTIQKENPSVKAVIVVPEGSFVTLELRRDRVRLWVDQQGLVTRVPNIG 78
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BLAST of mRNA_P-littoralis_Contig140.90.1 vs. uniprot
Match: A0A813JL18_POLGL (Hypothetical protein (Fragment) n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813JL18_POLGL)

HSP 1 Score: 62.8 bits (151), Expect = 2.930e-8
Identity = 31/65 (47.69%), Postives = 42/65 (64.62%), Query Frame = 2 
Query: 1115 VRQKWDQCVGMDVDEAMDLISEERPDLKKVIKVKEGSMVTMDMRSDRVRLFYNAQGVVTRAPKVG 1309
            V++ W + VG   + A+  I  +RP+L  V  + + SMVTMDMR DRVR+F    G V+RAPKVG
Sbjct:   47 VKRNWPELVGQAGEAAVAAIKSDRPELLHVDSLSDDSMVTMDMREDRVRVFVGQNGQVSRAPKVG 111
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BLAST of mRNA_P-littoralis_Contig140.90.1 vs. uniprot
Match: A0A8K0HSM7_9ROSA (Uncharacterized protein n=1 Tax=Rhamnella rubrinervis TaxID=2594499 RepID=A0A8K0HSM7_9ROSA)

HSP 1 Score: 61.2 bits (147), Expect = 5.670e-8
Identity = 29/71 (40.85%), Postives = 43/71 (60.56%), Query Frame = 2 
Query: 1097 NFATTGVRQKWDQCVGMDVDEAMDLISEERPDLKKVIKVKEGSMVTMDMRSDRVRLFYNAQGVVTRAPKVG 1309
            N +T   +  W + VG + + A+D+I  E P++   + VK GSMVTMD R DRVR++ +  G V   PK+G
Sbjct:   19 NCSTNTGKSSWPELVGTNGEAAVDIIKSENPNVNSAVTVKVGSMVTMDFRCDRVRVWVDDAGFVKLEPKIG 89
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BLAST of mRNA_P-littoralis_Contig140.90.1 vs. uniprot
Match: A0A7J6GBZ2_CANSA (Uncharacterized protein n=2 Tax=Cannabis sativa TaxID=3483 RepID=A0A7J6GBZ2_CANSA)

HSP 1 Score: 60.8 bits (146), Expect = 6.070e-8
Identity = 29/63 (46.03%), Postives = 41/63 (65.08%), Query Frame = 2 
Query: 1118 RQKWDQCVGMDVDEAMDLISEERPDLKKVIKVKEGSMVTMDMRSDRVRLFYNAQGVVTRAPKV 1306
            +  W + VG+  +     I++E P +K VI V EGS VTMD RSDRVRL+ + QG++TR P +
Sbjct:   17 KSSWPELVGIQGEIGEKTITKENPSIKTVIIVTEGSFVTMDFRSDRVRLWVDQQGLITRVPTI 79
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BLAST of mRNA_P-littoralis_Contig140.90.1 vs. uniprot
Match: A0A815XR57_9BILA (Hypothetical protein n=2 Tax=Rotaria sordida TaxID=392033 RepID=A0A815XR57_9BILA)

HSP 1 Score: 60.8 bits (146), Expect = 9.100e-8
Identity = 31/63 (49.21%), Postives = 40/63 (63.49%), Query Frame = 2 
Query: 1121 QKWDQCVGMDVDEAMDLISEERPDLKKVIKVKEGSMVTMDMRSDRVRLFYNAQGVVTRAPKVG 1309
            Q W   VG  VDEA+  I  + P L  VI+++EGS VT D RSDRVR+F+NA   V+  P+ G
Sbjct:   34 QSWSDLVGKPVDEAVAAIKSKNPSLN-VIRLEEGSAVTKDFRSDRVRVFFNANNKVSSTPRTG 95
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BLAST of mRNA_P-littoralis_Contig140.90.1 vs. uniprot
Match: A0A836CAH7_9STRA (Putative inhibitor of trypsin and hageman factor n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAH7_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 1.250e-7
Identity = 30/62 (48.39%), Postives = 42/62 (67.74%), Query Frame = 2 
Query: 1124 KWDQCVGMDVDEAMDLISEERPDLKKVIKVKEGSMVTMDMRSDRVRLFYNAQGVVTRAPKVG 1309
            +W +CVGM  ++A  LI E RPD + V  + + +MVTMD   +RVR+F +  G+VTRAP VG
Sbjct:   12 RWPECVGMKGEDAAQLIKEARPDWQ-VSVLSQDAMVTMDFGFERVRVFVDKDGIVTRAPHVG 72
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BLAST of mRNA_P-littoralis_Contig140.90.1 vs. uniprot
Match: A0A815WLF2_9BILA (Hypothetical protein n=2 Tax=Rotaria sordida TaxID=392033 RepID=A0A815WLF2_9BILA)

HSP 1 Score: 59.3 bits (142), Expect = 1.450e-7
Identity = 32/63 (50.79%), Postives = 40/63 (63.49%), Query Frame = 2 
Query: 1121 QKWDQCVGMDVDEAMDLISEERPDLKKVIKVKEGSMVTMDMRSDRVRLFYNAQGVVTRAPKVG 1309
            Q W   VGM V+EA+  I  E P L  VI V E S VTMD+R DRVR+F++A   V+ AP +G
Sbjct:    5 QSWPNLVGMPVNEAVAAIKSENPSLN-VIPVAEHSPVTMDLRMDRVRVFFDANNQVSSAPSIG 66
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BLAST of mRNA_P-littoralis_Contig140.90.1 vs. uniprot
Match: W9RI77_9ROSA (Glu S.griseus protease inhibitor n=1 Tax=Morus notabilis TaxID=981085 RepID=W9RI77_9ROSA)

HSP 1 Score: 59.3 bits (142), Expect = 1.850e-7
Identity = 29/64 (45.31%), Postives = 39/64 (60.94%), Query Frame = 2 
Query: 1118 RQKWDQCVGMDVDEAMDLISEERPDLKKVIKVKEGSMVTMDMRSDRVRLFYNAQGVVTRAPKVG 1309
            +  W + VGM+ D A   I  E P +  V  V EGS VTM++RSDR R++ N  G+VTR P +G
Sbjct:   12 KNSWPELVGMNSDVAEKKIKSENPSVTSVNIVPEGSFVTMEIRSDRARVWVNENGIVTRVPIIG 75
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig140.90.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6N7_ECTSI2.070e-2949.32Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2U095_9EUKA4.200e-948.53Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]
A0A2P5ECQ8_TREOI1.650e-843.48Proteinase inhibitor n=2 Tax=Cannabaceae TaxID=348... [more]
A0A813JL18_POLGL2.930e-847.69Hypothetical protein (Fragment) n=1 Tax=Polarella ... [more]
A0A8K0HSM7_9ROSA5.670e-840.85Uncharacterized protein n=1 Tax=Rhamnella rubriner... [more]
A0A7J6GBZ2_CANSA6.070e-846.03Uncharacterized protein n=2 Tax=Cannabis sativa Ta... [more]
A0A815XR57_9BILA9.100e-849.21Hypothetical protein n=2 Tax=Rotaria sordida TaxID... [more]
A0A836CAH7_9STRA1.250e-748.39Putative inhibitor of trypsin and hageman factor n... [more]
A0A815WLF2_9BILA1.450e-750.79Hypothetical protein n=2 Tax=Rotaria sordida TaxID... [more]
W9RI77_9ROSA1.850e-745.31Glu S.griseus protease inhibitor n=1 Tax=Morus not... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig140contigP-littoralis_Contig140:419650..423142 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog5888.CAK93862
Preferred namedhs-24
PFAMsadh_short
Model size2590
Max annot lvl2759|Eukaryota
KEGG rclassRC00649
KEGG koko:K11153,ko:K11161
KEGG ReactionR08379,R08383
KEGG Pathwayko00830,ko01100,map00830,map01100
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0008150,GO:0008152,GO:0016491,GO:0055114
Exons3
Evalue1.87e-09
EggNOG OGsCOG1028@1|root,KOG1208@2759|Eukaryota,3ZBTU@5878|Ciliophora
Ec32 ortholog descriptionputative serine protease inhibitor
Ec32 orthologEc-26_000240.1
EC1.1.1.300
DescriptionEnoyl-(Acyl carrier protein) reductase
Cds size360
COG categoryQ
BRITEko00000,ko00001,ko01000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789658.2910726-UTR-P-littoralis_Contig140:419649..4209271680789658.2910726-UTR-P-littoralis_Contig140:419649..420927Pylaiella littoralis U1_48UTRP-littoralis_Contig140 419650..420927 -
1680789658.3519852-UTR-P-littoralis_Contig140:422190..4231421680789658.3519852-UTR-P-littoralis_Contig140:422190..423142Pylaiella littoralis U1_48UTRP-littoralis_Contig140 422191..423142 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789658.3117297-CDS-P-littoralis_Contig140:420927..4210201680789658.3117297-CDS-P-littoralis_Contig140:420927..421020Pylaiella littoralis U1_48CDSP-littoralis_Contig140 420928..421020 -
1680789658.3272848-CDS-P-littoralis_Contig140:421514..4215911680789658.3272848-CDS-P-littoralis_Contig140:421514..421591Pylaiella littoralis U1_48CDSP-littoralis_Contig140 421515..421591 -
1680789658.3402214-CDS-P-littoralis_Contig140:422000..4221901680789658.3402214-CDS-P-littoralis_Contig140:422000..422190Pylaiella littoralis U1_48CDSP-littoralis_Contig140 422001..422190 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig140.90.1prot_P-littoralis_Contig140.90.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig140 420928..422190 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig140.90.1

>prot_P-littoralis_Contig140.90.1 ID=prot_P-littoralis_Contig140.90.1|Name=mRNA_P-littoralis_Contig140.90.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=120bp
MADAARAEDAEVEKAKEAVSGMVVEGVKEDIGVGERKGRKRSGKAGKPNF
ATTGVRQKWDQCVGMDVDEAMDLISEERPDLKKVIKVKEGSMVTMDMRSD
RVRLFYNAQGVVTRAPKVG*
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mRNA from alignment at P-littoralis_Contig140:419650..423142-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig140.90.1 ID=mRNA_P-littoralis_Contig140.90.1|Name=mRNA_P-littoralis_Contig140.90.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3493bp|location=Sequence derived from alignment at P-littoralis_Contig140:419650..423142- (Pylaiella littoralis U1_48)
CGCTGACTTCGTGGACAAGTGAAGCCCATCTGACGAACACAAGTTGCGCC
GGGGGTTTCCTACAAATGATAGGTGTAGCGTATTTTCACCAAAGAACAAA
AAGCTAGGAAAAGGCTCTGTTCGAACAAGATTGCGGGCGGGGGCAAGCCC
GCACCCACTAAAAGACGTTAAGTCCACTGGCGAGAGGGCCATGAAGGCAA
TGTCCGATTCGCAAGCCCTCGGAGATACTGCTCGGCGAGGAAAAATGGGA
GTCGGACCCCCAAAGCATAAATTTTGTTCCTTAGAATGACTTGATCACTA
GCCCACACAGTCAGCGCTAGTCGACGCAGTCAGCGCTAGTCGACGCAGTC
AGCGCTAGTCGACGCAGTCATCTGCTAGCTAATTGAAGTGGTGAACCATG
TAACGGACACACAGCAGTGGTGCTGTTGTGCTACTCAGTCTTGCACGGAG
GAGTCAGTCGTATCACACAGCACCTCGAGTGCAAGAACAGCAACACACAA
GATACACGCCGACGAACGCTTCCTTGAACACAGTGAACGTCGCAATGTGG
CAAACAAGAGAACAACAGACAACCCACATTGTTGTTACTCCACGTACAGC
ACGATCGTGGCATGTACATCTGTAGCTGCTGCTGACAAGTTCTGATACAC
GCTCGGCGCATTTAGCCGGTAGTACGACGGCTAGAATGACGATACTGGTA
TGTACGTATTTCGCTATTTGTCGTTGATTTCGATGTTATCCACGTTTGTT
CGTGCAGTTATAAGCTCGCGTTGAACCATCCCGTCCACTCGAACATCACA
AACCGTTGTACCAAGCATCAGGTATAACATGCAGGAGCACGAAAATTCAG
TAGACGTTGCCTACTTGGCATAAGTAGTACGAACGTTTCGACACCTACCG
TGCCTTGATTTGTCGCTTTCTTGCTTTGTGTCTTGTGGCATTAGCAGCAC
CGATGGCGGACGCTGCCCGCGCTGAAGACGCCGAGGTGGAGAAGGCCAAA
GAGGCCGTCTCAGGAATGGTGGTGGAGGGGGTCAAGGAAGACATCGGAGT
GGGCGAGCGTAAGGGGCGCAAACGGAGCGGAAAAGCGGGCAAGCCGAATT
TCGCAACGACAGGCGTGCGGCAGAAGTGGGACCAGTGTGTCGGTGAGAAC
GGCCCCACCTTTTTATTTTCTCGTTTTTTGCACGTCGCGTGCCGGACAGA
CAAGCAGTATCGAAAAAAAATTGCCCCGCGAGCTTCGTCGCAATAACTTC
ATGTGTAATGTGATTGAACTCACAGCTTCGACATGTTTTCAGGTTTACAG
GTTTGTTTTAAGAAGTTTGAAAGGCGATGTACGGTTTCCATCTTGACCCT
GTGAGTCGAAGTTTAATTTTTGGCCCACTTATTTCGATTGCAGGACTCCA
AAAAAATGACACCAAACATGTGTTGTATGCAACGAACTGGGTTTGTCGTC
AGTCTTTTGGCCTCATCAATTTTTTCTTTGGTCTCTCTAACTGCGTGCAT
GCGCTTCTCTGCTACCCGTTTTGCGTAACCTTTTCCTGATCGTTGACGCA
GGCATGGATGTAGACGAGGCAATGGATTTGATTTCAGAGGAACGGCCGGA
TCTTAAGAAAGTCATCAAGGTTAAGGAGGTCAGTTTGTTCCTTCATTGCG
GCTGCCCTGACCGAGTTACCCTTTTATGTGTACACCGATTGTCCGCCTGA
ACAGTAGGAGTAATTTTAATGCCAGCTTCGATTGCTTGCATTATTTTTCA
TTGGTTGCCTCGGCAAATGCAGGTCGCGTGGTTCGTGCACCGCTCTTACA
CTGATTATTGGCTACGTTTATGCGTGCCACTGCTGTTCTGCTGCATAATA
TTTGTGACTTTCGGATCATGGTGATCGAATAGTCGGAAGTACAGGGGGTG
GCTAGTCCTCAAGACTGCTACTACTGTGTAGGACTCAGTATGATTCCAAA
GAAACGACACTAACGGCACTTGTTACTGAATAATATTGTCGTGATTCCTA
ATTTTCAACGGTAAGCTAGCCACGACAACGTTCTGACAGGCTTGAGTTTA
TTCCCTTCCTACGCGTCTCGCATGTGCTCTCTCTCTCTATCTCTCTCTCT
CTCTCTGACTGTTTGGCCTCAGGGCTCAATGGTGACGATGGATATGCGCA
GCGACCGCGTCAGGTTGTTCTACAATGCACAAGGCGTTGTCACGCGTGCA
CCAAAAGTCGGCTAAAGCCAAGCGCACGGGAGGATGTGGCCGAGCCTCGC
CACGCCATGCGAGATCGCACACGTCGTTTGGAAGAACGGGGCCAGTAGCA
ATCAGGCGGAAAACTCCACTGACTCTGAAATGCTGTTGATCCTCAGGAAG
GAATTTTTATTTCTGCCGTGGTTGCTGTTTACTCCGTATATCTGTCGCGC
CCGTTGGGGCGCGGCGACGGTGGGACTTGAAGGAAGTAAGGGAGAAGGAG
CAGCGCCACCAACGCCTCACAGCAGTGGGGCGAGTAGTGAGGGTGTGGAT
TTTCCATCTGGGATTGATTGTCTTTTTTCTTATGCGTCGAGCCACATAAT
GATATAGAGTGGTAATGATATTTGCTGTGCCCCCACTCTGCCCGCGTGCT
TTGCAGTGCGTTTCTATCCTGCACATACATACCGTGCCGTTACACTTGTA
TGTGATCGTCTTTTTTCGTTTGATATTTCATGGGGTGAGGCCGGGGTTGC
TCTTCACACGTGCCCCTCTGCCATCATCGCCCGCGATTGGCGTCCAGCCA
GGCCTGGGTATTTTGTGCGTTCTCATGTATTTTTGGTGTACAGTAGTCGG
GAGTCATCGTGTGTTTCTCGAGCTTAGTATTTGGTACATGGCTCTCTTTT
TCAGGTGTCCATGCGTAGAAGCTGGACAGGGCTCGTGTTCTGCCTCTCTA
CGTGTGTAACGCCCGTCGGTATTGGCGTCGGGGTACCCGAATTTCCGGCT
GTTTTTTGCGGGTGAAATGGAAGGGTGCGGCAGCGGGCCTCTTGCATTTG
GTTTGTGTTCTGGCCATCCGCATGGTCAATCATTCCCCATTTCCTTTTAT
TTTTGTATAAAATGTTAGTGAAGATGTACTAAACGTGCGAGCACCATGAG
TATCGTTTGGGTATGCGTGCGTTTTTCTTTCGTTCGACATGAAGGCATGG
CAGTACAAGGCGGGCCGGTTTCGGTTCACATATTCATCGACAACCAGATA
GTTGTGGTTGTGTGAGCTCGCGTGCCGTGCAGAGAAGCTACACATAAGAT
GATCCGAATTATGACTTCATCGTGTACTGGTATGTCGGTGCTCCCCAACT
GCGGCACGGCAAAAGTACGTGTTACAAGATGCGGATGATGCCTCTGCGCT
TCCAATACAGTCATGCTGGTCGCATCTACATCTATCAAGCAAGTGCCAGA
TATGGATGTTTAATTTTGTTTCCGCAGCAGTGCAGCATCACTGGATCATG
TGTGATTTGCCCCCTCCTTTTACCCCCCTGTGAAAAATCATGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig140:419650..423142-

>mRNA_P-littoralis_Contig140.90.1 ID=mRNA_P-littoralis_Contig140.90.1|Name=mRNA_P-littoralis_Contig140.90.1|organism=Pylaiella littoralis U1_48|type=CDS|length=360bp|location=Sequence derived from alignment at P-littoralis_Contig140:419650..423142- (Pylaiella littoralis U1_48)
ATGGCGGACGCTGCCCGCGCTGAAGACGCCGAGGTGGAGAAGGCCAAAGA
GGCCGTCTCAGGAATGGTGGTGGAGGGGGTCAAGGAAGACATCGGAGTGG
GCGAGCGTAAGGGGCGCAAACGGAGCGGAAAAGCGGGCAAGCCGAATTTC
GCAACGACAGGCGTGCGGCAGAAGTGGGACCAGTGTGTCGGCATGGATGT
AGACGAGGCAATGGATTTGATTTCAGAGGAACGGCCGGATCTTAAGAAAG
TCATCAAGGTTAAGGAGGGCTCAATGGTGACGATGGATATGCGCAGCGAC
CGCGTCAGGTTGTTCTACAATGCACAAGGCGTTGTCACGCGTGCACCAAA
AGTCGGCTAA
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