mRNA_P-littoralis_Contig140.29.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig140.29.1
Unique NamemRNA_P-littoralis_Contig140.29.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig140.29.1 vs. uniprot
Match: A0A6H5KDN6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDN6_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 3.090e-27
Identity = 65/122 (53.28%), Postives = 82/122 (67.21%), Query Frame = 3 
Query:    3 VPSFVLAGMGLTRQPGFEMSKTIGALLKEEITRAFPKELGPCVEV---EQQEMEKSVAKIEGAQRDALAYSGQLGATHEAVIALLAARPPCFEEDLPRFTPDTTVPSGGEPTTGVTDDVEVD 359
            +P  V  GM L  QPG EMS  +G  L++E+ RA P    P +E    +++++  S A    AQ++ALAYS QL A+HEAVI LLAARPPCF  D+PR  PD TVPSGGEP +GV+DDVE D
Sbjct:  204 IPPLVTGGMRLRCQPGLEMSNAMGGRLQDEMVRALP----PALEARGSDERQVSASRAAFSIAQKEALAYSCQLSASHEAVITLLAARPPCFTPDVPRRAPDPTVPSGGEPPSGVSDDVERD 321
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BLAST of mRNA_P-littoralis_Contig140.29.1 vs. uniprot
Match: D8LEP9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEP9_ECTSI)

HSP 1 Score: 107 bits (266), Expect = 1.550e-24
Identity = 62/119 (52.10%), Postives = 72/119 (60.50%), Query Frame = 3 
Query:    3 VPSFVLAGMGLTRQPGFEMSKTIGALLKEEITRAFPKELGPCVEVEQQEMEKSVAKIEGAQRDALAYSGQLGATHEAVIALLAARPPCFEEDLPRFTPDTTVPSGGEPTTGVTDDVEVD 359
            +P FV  GMGL  QPG EMSKT+G  L++E+ RA P    P +E    +                    QL ATHEAVI LLAARPPCF  D+PR TPD TVPSGGEP +GV+DDVE D
Sbjct:  204 IPPFVTGGMGLRCQPGLEMSKTMGGRLQDEMVRALP----PALEARGSD------------------ERQLSATHEAVITLLAARPPCFTPDVPRRTPDPTVPSGGEPPSGVSDDVERD 300
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig140.29.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KDN6_9PHAE3.090e-2753.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LEP9_ECTSI1.550e-2452.10Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig140contigP-littoralis_Contig140:155637..155995 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size359
Hectar predicted targeting categoryother localisation
Exons1
Cds size333
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789655.472263-UTR-P-littoralis_Contig140:155636..1556621680789655.472263-UTR-P-littoralis_Contig140:155636..155662Pylaiella littoralis U1_48UTRP-littoralis_Contig140 155637..155662 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789655.4867122-CDS-P-littoralis_Contig140:155662..1559951680789655.4867122-CDS-P-littoralis_Contig140:155662..155995Pylaiella littoralis U1_48CDSP-littoralis_Contig140 155663..155995 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig140.29.1prot_P-littoralis_Contig140.29.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig140 155663..155995 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig140.29.1

>prot_P-littoralis_Contig140.29.1 ID=prot_P-littoralis_Contig140.29.1|Name=mRNA_P-littoralis_Contig140.29.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=111bp
MGLTRQPGFEMSKTIGALLKEEITRAFPKELGPCVEVEQQEMEKSVAKIE
GAQRDALAYSGQLGATHEAVIALLAARPPCFEEDLPRFTPDTTVPSGGEP
TTGVTDDVEVD
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mRNA from alignment at P-littoralis_Contig140:155637..155995+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig140.29.1 ID=mRNA_P-littoralis_Contig140.29.1|Name=mRNA_P-littoralis_Contig140.29.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=359bp|location=Sequence derived from alignment at P-littoralis_Contig140:155637..155995+ (Pylaiella littoralis U1_48)
CGGTACCCTCGTTTGTCCTAGCTGGAATGGGACTGACTCGCCAGCCGGGG
TTCGAGATGTCAAAGACAATTGGTGCTCTGCTGAAGGAGGAGATAACGCG
GGCCTTTCCTAAGGAGTTGGGGCCGTGCGTAGAGGTAGAGCAGCAGGAGA
TGGAGAAATCAGTGGCGAAAATCGAGGGGGCTCAAAGGGATGCTCTTGCG
TATTCGGGCCAGCTCGGCGCCACTCATGAGGCCGTGATCGCGCTTCTCGC
GGCCAGACCGCCGTGTTTCGAAGAAGATTTGCCGCGGTTTACCCCTGACA
CCACTGTCCCATCGGGTGGAGAACCGACGACGGGGGTGACCGACGATGTT
GAAGTGGAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig140:155637..155995+

>mRNA_P-littoralis_Contig140.29.1 ID=mRNA_P-littoralis_Contig140.29.1|Name=mRNA_P-littoralis_Contig140.29.1|organism=Pylaiella littoralis U1_48|type=CDS|length=333bp|location=Sequence derived from alignment at P-littoralis_Contig140:155637..155995+ (Pylaiella littoralis U1_48)
ATGGGACTGACTCGCCAGCCGGGGTTCGAGATGTCAAAGACAATTGGTGC
TCTGCTGAAGGAGGAGATAACGCGGGCCTTTCCTAAGGAGTTGGGGCCGT
GCGTAGAGGTAGAGCAGCAGGAGATGGAGAAATCAGTGGCGAAAATCGAG
GGGGCTCAAAGGGATGCTCTTGCGTATTCGGGCCAGCTCGGCGCCACTCA
TGAGGCCGTGATCGCGCTTCTCGCGGCCAGACCGCCGTGTTTCGAAGAAG
ATTTGCCGCGGTTTACCCCTGACACCACTGTCCCATCGGGTGGAGAACCG
ACGACGGGGGTGACCGACGATGTTGAAGTGGAC
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