mRNA_P-littoralis_Contig140.25.4 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig140.25.4 vs. uniprot
Match: A0A6H5KGT0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGT0_9PHAE) HSP 1 Score: 515 bits (1326), Expect = 2.280e-156 Identity = 589/1306 (45.10%), Postives = 698/1306 (53.45%), Query Frame = 2
Query: 125 MRGRLKQKFQGEDGVLCWAWKYFLLQIGSPPSLRVTDCSSDGYEISSGGRGVAGGGSPANNGAGMPVSQVSLEGARYAAAWSGINAFNGCGFDLVWASGRTWSLLCEDPLSRKSWVDALNLSIRSAETDAGDVD-VAAGAGQKT-TPTSSRRLDRTHQPRRRTLPQDGTPRANTD--------PRHPGDRTSARTTGALDEKSSFAGTSFSFGAGEPSAYPPKAGTTGYHDNSCHGSFDQEADRPQRASGRRRQRREMATERGPFAAAGQPDR-CSSDTSEPGSNDRFF-STADPARAARGGDEKEAGGRVVHGTCSTDSSSACLSGEGRRKSRTSERSEKLAKASAATWEQFQQLLERSRRSKARFDKAMDGAA--VAAXXXXXXXXXXXXXXXXXXXXXRRVGGDKDGKNGGVEGKTKHGSAPRKAPMGSCGVASHHARK--AGAAGDASLAFQREDSAADAGGSSTDRASDV-TARSSCVGCPEEAGVAGSGSAXXXXXXXXXXXRLAATASAGDASCPEKIDAGVVLLQPSGADCRHSVNATA-AGVDVDAA------DHELESSRLSAAGVTDVETSFMLEGLAERSSERSLGEKGSSRSSTLSGSXXXXXXXXXXXXXXXXXXXXXXRAA--ATSVSNHVRQPEADLETARRPAEHAAQAEESLRFLQLAAKADDAGS---------------------GRDDSERQRLRDELAETKEAFAEH--QRRE--------RXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARALLEREREKERA--------EVVAGTAATQNRWEARLGEVLAEAAKAERER-----AQG---VRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDAL---ADELDQCITRLGDRSREAASAMRSRQQREITEISSRCEIEKEALRERLALEAEEKARKDTTLALSAQERRIRAEVAAKXXXXXXXXXXXXXXXXXXXXXXXXATRQDIEKLRGLHAKRVKRLEALLKDEGENLADARREIAACKATLAGDAGDFQRWAEEQRDQASRLLKELAVIQKKVDRAAATEALAREREGLAMNRLRKVMEEARLERAEGAEVKRQFREALAELESDRNGQARRARQNLQLQRAAEIAQQEVAMVEAEKSRWHRERQSMETALQRLTRLVYGTT------NTTNNANSSSXXXXXXXXXXXXXXXXNHASVSVYAGKHKPTSSPWKPPGGVRVTAGDRGHTSSGANNDT---RAACSPIGVNAYRRPQGIGSTRGVAGRQDK 3787
M GRLKQK QGE G+ PP C S +VSLEGAR+AAAWSGI+AFNGCGFDLVWASGRTWSLLC++ SRKSWVDALNL+IRS GD+D +A+GAGQ+ +P R T RRR P P + PRH R SA+ TG +S GT S G+ + + T D + G+ + P QRRE A+ AGQ D SD S P N F S ARG DE GG GT + SS + GR +R ERSE+LA+ASAATWE FQQLLERSR SKARFD+ MDG A V + + G K G GV + P P+G + K A A G A A + A G SSTDR SDV T R G G XXXXXXXXXX T ++ + G C TA +GVD D A DHE E S LSAA VTDVE S +LE E S+E S + RS+T XXXXXXXXXXXXXXXXXXXXXX AT++++ VR+ DL TAR+ A A G D ER LR ELA + +E QRRE +XXXXXXXXXXXXXXXXXXXXXXXXX AL + +RE+ A + +AG + R + L E + + A RER A G R XXXXXXXXXXXXXXXXX ++L A+ELDQCI+RLGD++RE ASA+RS+QQREI E+SSRCE+EKEALRE+L LEA EKAR++T ++LSAQERRIR EVAAK ATR+DI+KLRGLHA+RVKRLEALLK+E +NLADARRE+A+CKAT+AG+A +FQRW E R+++++LLKELAVIQKKVDRA ATEA AREREGLAM RLRKVMEEARLERAEGAEVKRQ REALAELESDRN QARRAR NLQLQRAAEIAQQEVAMVE+E++RW+ ER+SMETA++RLTRLVYGTT NT+ + N+S+ A+VS PT PWKPPG + RGH S+G ++ T RAACSPIGVNA+R + I + RGV G K
Sbjct: 1 MEGRLKQKLQGEHGLR-----------RQPPRALTRRCFSTAAPSLL-----------------CTHQKVSLEGARHAAAWSGIDAFNGCGFDLVWASGRTWSLLCDNSFSRKSWVDALNLAIRSTANTPGDIDAIASGAGQRNVSPRGRGRTSGTTAARRRHPPDVVRPHSPLAAGEQSFRLPRHSSVRPSAQNTGHHSPQSG--GTRGSRRYGDRWSCEDR---TPPGDGAVVGALVHDVIAPTEGERHNHQRREGASR-----TAGQHDGPYPSDVSRPAENGVFPPSLTGGVSGARGSDEGRGGG----GTVGSMDSSGGVWRRGRSIAR--ERSEELARASAATWEHFQQLLERSRESKARFDRVMDGTAAGVVSSATTSSGSLSASAVSEPSSSSSQAGDRKAGAGVGVARRNTRTGVP---PVGFEPMEPPRVPKVEAAAVGVAGTARRNGSMATSVGSSSTDRVSDVSTPRLRPTRASSNGGRWRGGDXXXXXXXXXXXANSDTT---------RRVSRAQKNVTADGVSCGDGGYCTADSGVDADEAAPAPPSDHEHERSCLSAA-VTDVEISLLLE---ESSAEGSPSVRRDGRSTTKGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATAINDRVRRLGVDLTTARQEATAEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNSDCER--LRKELAALRATVSEEREQRRETANPVAAAKXXXXXXXXXXXXXXXXXXXXXXXXXTEVRLEEALAKADRERAEAVRQREELEKALAGEIGERRRVNSLL-EARSRSESALRERLGATAADGDLKARLTSTQSQLEAVSLERDTLRIMRIPLDHRGDGSLSTYTDFSLSXXXXXXXXXXXXXXXXXYLSLPNSLCSKAEELDQCISRLGDQAREVASALRSKQQREIAEVSSRCEVEKEALREQLVLEAAEKAREETRVSLSAQERRIRGEVAAKAAKDAKRREKQLREAKAEAEAAGEATRRDIDKLRGLHARRVKRLEALLKEERDNLADARRELASCKATMAGEAAEFQRWTENHRNESTKLLKELAVIQKKVDRAVATEAQAREREGLAMGRLRKVMEEARLERAEGAEVKRQLREALAELESDRNAQARRARANLQLQRAAEIAQQEVAMVESERARWYEERRSMETAMERLTRLVYGTTAAAPGGNTSGDGNASAA-----------------AAVSKSTWTKAPTGFPWKPPGCIA----SRGHGSNGGSSGTTATRAACSPIGVNAFRE-RAIATARGVEGSSRK 1221
BLAST of mRNA_P-littoralis_Contig140.25.4 vs. uniprot
Match: D8LEQ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEQ4_ECTSI) HSP 1 Score: 320 bits (820), Expect = 2.050e-95 Identity = 203/341 (59.53%), Postives = 236/341 (69.21%), Query Frame = 2
Query: 2774 LEAEEKARKDTTLALSAQERRIRAEVAAKXXXXXXXXXXXXXXXXXXXXXXXXATRQDIEKLRGLHAKRVKRLEALLKDEGENLADARREIAACKATLAGDAGDFQRWAEEQRDQASRLLKELAVIQKKVDRAAATEALAREREGLAMNRLRKVMEEARLERAEGAEVKRQFREALAELESDRNGQARRARQNLQLQRAAEIAQQEVAMVEAEKSRWHRERQSMETALQRLTRLVYGTTNTTNNANSSSXXXXXXXXXXXXXXXXNHASVSVYAGKHKPTSSPWKPPGGVRVTAGDRGHTSSGANNDT---RAACSPIGVNAYRRPQGIGSTRGVAGRQDK 3787
LEA EKAR++T + LSAQERRIR EVAAK ATR+DI+KLRGLHA+RVKRLEALLK+EG+NLADARREIA+CKA +AGDA +FQRW E R+++++LLKELAVIQKKVDRA ATEA AREREGLAM RLRKVME GAEVKRQ REALAELESDRN QARRAR NL+LQRAAEIAQQEVAMVE+E++RW+ ER+SMETA++RLTRLVYGTT T N+S A+ GK P PWKPPGG+ RGH S+G ++ T RA CSPIG+NA+R + S RGV G K
Sbjct: 2 LEAAEKAREETRVTLSAQERRIRGEVAAKAAKDAKRRDKQLREAKAEAESAGEATRKDIDKLRGLHARRVKRLEALLKEEGDNLADARREIASCKAAMAGDAAEFQRWTENHRNESTKLLKELAVIQKKVDRAVATEAQAREREGLAMGRLRKVME--------GAEVKRQLREALAELESDRNAQARRARANLKLQRAAEIAQQEVAMVESERARWYEERRSMETAMERLTRLVYGTTATAPCGNTSGDGNASAA-----------AAGGKSTGKKAPIGFPWKPPGGIA----SRGHGSNGGSSGTTTTRAVCSPIGINAFRE-RASASVRGVEGSSRK 318
BLAST of mRNA_P-littoralis_Contig140.25.4 vs. uniprot
Match: D8LEQ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEQ3_ECTSI) HSP 1 Score: 177 bits (448), Expect = 1.450e-42 Identity = 143/317 (45.11%), Postives = 164/317 (51.74%), Query Frame = 2
Query: 332 VSLEGARYAAAWSGINAFNGCGFDLVWASGRTWSLLCEDPLSRKSWVDALNLSIRSAETDAGDVD-VAAGAGQKTTPTSSRRLDRTHQPRRRTLPQDGTPRANTDPRHPGDRTSARTTGALDEKSSFAGTSFSF-----GAGEPSAYPPKAGTTGYH---------------DNSCHGSFDQEADRPQRASGRRRQRREMATERGPFAAAGQPDRCSSDTSEPGSNDRFFS--TADPARAARGGDEKEAGGRVVHGTCSTDSSSACLSGEGRRKSRTSERSEKLAKASAATWEQFQQLLERSRRSKARFDKAMDGAA 1213
VSLEGAR+AAAWSGI+AFNGCGFDLVWASGRTWSLLC+DP SRKSWVDALNL+IRS GD+D +A+GAGQ+ P + RT T RHP D + A E+SS S G PS P GT G H D + G+ +A P QRR+ A+ A + SD S P F T D A ARG DE GG V S GR +S +ERSE+LA+ASAATWE FQQLLERSR SKARFDKAMDG A
Sbjct: 19 VSLEGARHAAAWSGIDAFNGCGFDLVWASGRTWSLLCDDPFSRKSWVDALNLAIRSTANTTGDIDAIASGAGQRNVPARGPQRGRTSST------------TATRRRHPPDVVRPHSPPAAGEQSSRFPRYSSVRPSAQNTGHPS--PQSRGTRGSHRYGDRWSCEDRTPPGDGAVVGALVHDAIAPTEGERHNHQRRKGASR----TAEQHDEAYPSDVSGPAEKGVFSPSLTCDGA-GARGSDEGSGGGGTV------GSMXXXXXXRGRGRSIATERSEELARASAATWEHFQQLLERSRESKARFDKAMDGTA 310 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig140.25.4 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig140.25.4 >prot_P-littoralis_Contig140.25.4 ID=prot_P-littoralis_Contig140.25.4|Name=mRNA_P-littoralis_Contig140.25.4|organism=Pylaiella littoralis U1_48|type=polypeptide|length=1303bp MRGRLKQKFQGEDGVLCWAWKYFLLQIGSPPSLRVTDCSSDGYEISSGGRback to top mRNA from alignment at P-littoralis_Contig140:93662..106478- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig140.25.4 ID=mRNA_P-littoralis_Contig140.25.4|Name=mRNA_P-littoralis_Contig140.25.4|organism=Pylaiella littoralis U1_48|type=mRNA|length=12817bp|location=Sequence derived from alignment at P-littoralis_Contig140:93662..106478- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig140:93662..106478- >mRNA_P-littoralis_Contig140.25.4 ID=mRNA_P-littoralis_Contig140.25.4|Name=mRNA_P-littoralis_Contig140.25.4|organism=Pylaiella littoralis U1_48|type=CDS|length=3909bp|location=Sequence derived from alignment at P-littoralis_Contig140:93662..106478- (Pylaiella littoralis U1_48)back to top |