mRNA_P-littoralis_Contig140.9.2 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig140.9.2 vs. uniprot
Match: A0A6H5KPZ5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KPZ5_9PHAE) HSP 1 Score: 338 bits (868), Expect = 2.220e-106 Identity = 159/252 (63.10%), Postives = 197/252 (78.17%), Query Frame = 3
Query: 255 ASVAVLTGMLTAAEALRVLTPWNGMTVVADRPVMTSWGGSGASPDDRFEIDLHYCGSYSFCFENDHDCGFLIANLCSNDGDSACMSQEEMSSQVVFPEPMNGVSNDGYRVRISEVGSETFRCSDDFYLMSSADAPAAGEPGGPTVEVLAPDANSMALAGEMYTVEFGYDNGFGVSMGRFNIDLYEAQGPGDCGAYVTSICDKPGMGCHDTQGDYDIVIPQDTAVGMYKIRVGLFGADDVYGCSEAFEVVRSD 1010
A VL +T+ EALRVLTP +V + RP + SW GA DDRFE+DLHYCGSYSFCF DCGF IAN+C N+ D ACM Q++ SSQV FPEP+ G SN+GYRVRISEVG++ FRCS+DFYL++SAD GEPGGPT+EV+AP+AN++A+AGE YTVEF YDNGFG +GRF IDLY+A+G GDCG++VTS+CDKP MGC D++GDYD+VIP D+ GMYKIRVGLFG D +Y CS +FE+ ++
Sbjct: 10 ALAGVLGNTITSTEALRVLTPAVAESVASGRPYVVSW--QGAQADDRFEVDLHYCGSYSFCFGEAEDCGFWIANVC-NEADDACMIQDDQSSQVTFPEPVAGHSNNGYRVRISEVGTDNFRCSEDFYLVASADVLEFGEPGGPTMEVVAPEANALAVAGETYTVEFDYDNGFGEQLGRFKIDLYKAEGNGDCGSWVTSVCDKPDMGCRDSEGDYDVVIPADSEEGMYKIRVGLFGDDSIYACSPSFEITTTN 258
BLAST of mRNA_P-littoralis_Contig140.9.2 vs. uniprot
Match: D8LEQ9_ECTSI (EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEQ9_ECTSI) HSP 1 Score: 338 bits (867), Expect = 4.710e-106 Identity = 165/259 (63.71%), Postives = 204/259 (78.76%), Query Frame = 3
Query: 255 ASVAVLTGML-----TAAEALRVLTPWNGMTVVADRPVMTSWGGSGASPDDRFEIDLHYCGSYSFCFENDHDCGFLIANLCSNDGDSACMSQEEMSSQVVFPEPMNGVSNDGYRVRISEVGSETFRCSDDFYLMSSADAPAAGEPGGPTVEVLAPDANSMALAGEMYTVEFGYDNGFGVSMGRFNIDLYEA---QGPGDCGAYVTSICDKPGMGCHDTQGDYDIVIPQDTAVGMYKIRVGLFGADDVYGCSEAFEVVRS 1007
AS+ L G+L T+ EAL+VLTP TVV+ RP + SW +GAS DDRFEIDLHYCGSYS+CFE + +CGF +AN+C+ S CMSQ + SSQV FPEP+ G SN+GYR+RI+EVGS+T+RCSDDFYLMSSADAPA GE GGPT+EV+AP A+++A+AGE+YTVEF YDNGFG +GRF IDLY+A G GDCG +VTS+CDKP +GC D+QGDY++VIP D+ GMYKIRVGLFG D +Y CS +FEVV +
Sbjct: 6 ASLVALAGILGHTTITSTEALQVLTPAVAETVVSGRPYIVSW--NGASADDRFEIDLHYCGSYSYCFE-EAECGFWLANVCAEGDGSGCMSQADQSSQVTFPEPLGGRSNEGYRIRIAEVGSDTYRCSDDFYLMSSADAPAVGEDGGPTIEVVAPTADALAIAGEIYTVEFDYDNGFGEQLGRFKIDLYKALGEDGAGDCGTWVTSVCDKPDVGCLDSQGDYNVVIPTDSEDGMYKIRVGLFGDDTIYACSPSFEVVAA 261
BLAST of mRNA_P-littoralis_Contig140.9.2 vs. uniprot
Match: D7FN59_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN59_ECTSI) HSP 1 Score: 337 bits (863), Expect = 6.740e-106 Identity = 164/253 (64.82%), Postives = 198/253 (78.26%), Query Frame = 3
Query: 255 ASVAVLTGML----TAAEALRVLTPWNGMTVVADRPVMTSWGGSGASPDDRFEIDLHYCGSYSFCFENDHDCGFLIANLCSNDGDSACMSQEEMSSQVVFPEPMNGVSNDGYRVRISEVGSETFRCSDDFYLMSSADAPAAGEPGGPTVEVLAPDANSMALAGEMYTVEFGYDNGFGVSMGRFNIDLYEAQGPGDCGAYVTSICDKPGMGCHDTQGDYDIVIPQDTAVGMYKIRVGLFGADDVYGCSEAFEVV 1001
A +A LTGML T EALRVLTP TVV+D P + SW GASPDDRFEIDLHYCGSYSFCFE +CGF + NLC+ +GD ACM+Q+++ SQV PEP++G SN GYRVRI +VG+ETFRCSD+FYLMSSADA + GPT+EV+AP + ++A+AG +YTVEF YDNGFG GRF IDLY A+G GDCG +V+S+CDKP +GCHDT+GDYDIVIP+D+ GMYKIRVGLFG D V+ CS +FEVV
Sbjct: 6 AFIAALTGMLGNIITDTEALRVLTPAVAETVVSDMPYIVSW--KGASPDDRFEIDLHYCGSYSFCFEEADECGFWVTNLCA-EGDDACMNQDDLMSQVTLPEPVDGHSNSGYRVRIGKVGTETFRCSDEFYLMSSADA---SDQDGPTMEVVAPSSGALAVAGAVYTVEFDYDNGFGAQQGRFKIDLYHAEGTGDCGDWVSSVCDKPDVGCHDTEGDYDIVIPRDSEGGMYKIRVGLFGDDSVFACSASFEVV 252
BLAST of mRNA_P-littoralis_Contig140.9.2 vs. uniprot
Match: D8LI46_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI46_ECTSI) HSP 1 Score: 242 bits (618), Expect = 5.210e-70 Identity = 126/249 (50.60%), Postives = 165/249 (66.27%), Query Frame = 3
Query: 279 MLTAAEALRVLTPWNGMTVVADRPVMTSWGGSGASPDDRFEIDLHYCGSYSFCFENDHDCGFLIANLCSNDGDSACMSQEEMSSQVVFPEPMNGVSNDGYRVRISEVGSE-TFRCSDDFYLMSSADAPAAGEPGGPTVEVLAPDANSMALAGEMYTVEFGYDNGFGVSMGRFNIDLYEAQGPGDCGAYVTSICDKPGMGCHDTQGDYDIVIPQDTAVGMYKIRVGLFGADDVYGCSEAFEVVRSDLSMD 1022
ML AA AL V+TP G VVA R W G+G++ +R+EIDL+YCGS C E+ +CG + LC G+ C E +V PEPM+G S GY+VR+++V + + CSD+FYLM+ A+AP+AG+ GGP V V +P + A AGE YTVEF YDNG G S+GRF IDLY A G GDCG ++ ++CDKP +GC D+ GDYD+ IP+D GMY IRVG F D VYGCS+ FE++ +D S D
Sbjct: 1 MLGAASALEVVTPAEGDIVVASRAYTVEWTGTGSN--NRYEIDLYYCGS--MCMED--ECGDWVTALCPY-GEDGCPDNEG-DYDIVMPEPMSGTSGSGYKVRVADVDDDDSGDCSDEFYLMAHAEAPSAGDAGGPYVTVTSPSSGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYSATGSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDDSVYGCSDEFEILGADDSPD 241
BLAST of mRNA_P-littoralis_Contig140.9.2 vs. uniprot
Match: A0A6H5JRG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRG9_9PHAE) HSP 1 Score: 238 bits (606), Expect = 2.080e-68 Identity = 126/251 (50.20%), Postives = 158/251 (62.95%), Query Frame = 3
Query: 261 VAVLTGMLTAAEALRVLTPWNGMTVVADRPVMTSWGGSGASPDDRFEIDLHYCGSYSFCFENDHDCGFLIANLCSNDGDSACMSQEEMSSQVVFPEPMNGVSNDGYRVRISEV-GSETFRCSDDFYLMSSADAPAAGEPGGPTVEVLAPDANSMALAGEMYTVEFGYDNGFGVSMGRFNIDLYEAQGPGDCGAYVTSICDKPGMGCHDTQGDYDIVIPQDTAVGMYKIRVGLFGADDVYGCSEAFEVVRSD 1010
VA+ GML AA AL+V TP G+TV+ADR W +G S D+RFEIDL+YCGS C E+ DCG + LC G+ C E +V PEPM G S GY+VR+ ++ E CSD+FYL++S++AP+ G+ GPT+EV +P + +A YTVEF YDNG G S+ RF IDLY A G GDCG YV SICDKP +GC D+ GDYD+ IP DT G YKIRV F D +Y CS F + D
Sbjct: 7 VALACGMLGAANALKVSTPSKGLTVIADRTYTVEW--TGTSSDNRFEIDLYYCGS--MCMED--DCGDWVTALCPY-GEDGCPDNEG-DYDIVMPEPMLGTSGSGYKVRVWDIHDEEDADCSDEFYLLASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVEFDYDNGVGSSVDRFAIDLYRADGEGDCGTYVQSICDKPTIGCKDSMGDYDVEIPCDTDAGEYKIRVARFEDDSLYSCSGTFTIEEGD 249
BLAST of mRNA_P-littoralis_Contig140.9.2 vs. uniprot
Match: D7FYL2_ECTSI (EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYL2_ECTSI) HSP 1 Score: 231 bits (588), Expect = 5.310e-66 Identity = 126/251 (50.20%), Postives = 155/251 (61.75%), Query Frame = 3
Query: 261 VAVLTGMLTAAEALRVLTPWNGMTVVADRPVMTSWGGSGASPDDRFEIDLHYCGSYSFCFENDHDCGFLIANLCSNDGDSACMSQEEMSSQVVFPEPMNGVSNDGYRVRISEVGSE-TFRCSDDFYLMSSADAPAAGEPGGPTVEVLAPDANSMALAGEMYTVEFGYDNGFGVSMGRFNIDLYEAQGPGDCGAYVTSICDKPGMGCHDTQGDYDIVIPQDTAVGMYKIRVGLFGADDVYGCSEAFEVVRSD 1010
VA+ ML AA AL V+TP + VVADR W G+ + RFEIDL++CGS C E+ CG + LC G+ C E +V PEPM+G SN GY+VR+ +V E + CSD FYLM+S DAP AG G + V +P A AGE YTVEF YDNG G + RF+IDLY A G GDCG YVTSICDKP +GC D+ GDYD+ IP DT G YKIRVG F +++YGCS F ++ D
Sbjct: 7 VALACAMLGAANALEVVTPSADLIVVADRTYTVEWTGADSG---RFEIDLYHCGS--MCMED--SCGDWVTALCPY-GEEGCPDNEG-DYDIVMPEPMSGESNSGYKVRVMDVSDEDSMDCSDAFYLMASEDAPDAGSESGYFLTVTSPAEGDSAEAGEEYTVEFDYDNGVGSKVDRFSIDLYMADGDGDCGTYVTSICDKPSIGCKDSMGDYDVEIPADTEAGDYKIRVGRFEDEELYGCSGTFTIMGGD 248
BLAST of mRNA_P-littoralis_Contig140.9.2 vs. uniprot
Match: D7G3F0_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F0_ECTSI) HSP 1 Score: 222 bits (565), Expect = 9.000e-63 Identity = 125/261 (47.89%), Postives = 166/261 (63.60%), Query Frame = 3
Query: 255 ASVAVLTGMLTAAEALRVLTPWNGMTVVADRPVMTSWGGSGASPDDRFEIDLHYCGSYSFCFENDHDCGFLIANLCSNDGDSACMSQEEMSSQVVFPEPMNGVSNDGYRVRISEVGSET-FRCSDDFYLMSSADAPAAGEPGGPTVEVLAPDANSMALAGEMYTVEFGYDNGFGVSMGRFNIDLYE-AQGPGDCGAYVTSICDKPGMGCHDTQGDYDIVIPQDTAVGMYKIRVGLFGADDVYGCSEAFEVV--RSDLSMDL 1025
A A+ GML AA AL V++P G++V+ADR W G+ D RFEIDL+YCGS FC E+ +CG + LC D +Q + +V PEPM G S+ GY+V +++ E+ CS DF L++S DAPAAGE G ++ V +P A+AG +YTVE+ Y+NG G S RF IDLY G GDCG YV ++CDKP +GC D+QGDYD+ IP DT GMY +RVG+F D ++ CSE FE+V R+D+SM L
Sbjct: 5 AFAALAFGMLGAANALEVVSPAAGISVIADRTYTVEWTGTS---DSRFEIDLYYCGS--FCMED--ECGDWVTALCPYGADGCPDTQGDYD--IVMPEPMAGTSS-GYKVVVTDSNDESSMGCSGDFTLVASTDAPAAGEVGY-SLTVTSPSDGDTAMAGGVYTVEWDYENGLGSSTDRFAIDLYSYGTGTGDCGTYVATLCDKPSIGCPDSQGDYDVEIPSDTPAGMYSVRVGVFSDDMMFDCSEGFEIVNDRTDMSMRL 254
BLAST of mRNA_P-littoralis_Contig140.9.2 vs. uniprot
Match: D7G3E8_ECTSI (Imm upregulated 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3E8_ECTSI) HSP 1 Score: 221 bits (562), Expect = 2.240e-62 Identity = 123/253 (48.62%), Postives = 160/253 (63.24%), Query Frame = 3
Query: 255 ASVAVLTGMLTAAEALRVLTPWNGMTVVADRPVMTSWGGSGASPDDRFEIDLHYCGSYSFCFENDHDCGFLIANLCSNDGDSACMSQEEMSSQVVFPEPMNGVSNDGYRVRISEVGSET-FRCSDDFYLMSSADAPAAGEPGGPTVEVLAPDANSMALAGEMYTVEFGYDNGFGVSMGRFNIDLYEAQGPGDCGAYVTSICDKPGMGCHDTQGDYDIVIPQDTAVGMYKIRVGLFGADDVYGCSEAFEVVRSD 1010
A A+ GML AA AL V++P G VVAD W G+ + R++IDL+YCGS C E+ +CG + LC GD C + VV PEPM+G S+ GY+V +++ E+ + CS DF L++S +AP A + G V V +P A+AG YTVEF YDNG G S+ RF IDLY + G GDCG YVT+ICDKP +GC D+QGDYD+VIP T GMY IRVG+F DDVYGCS++FE+V +
Sbjct: 5 AFAALAFGMLGAANALEVVSPAAGDMVVADSAYTVEWTGATSG---RYDIDLYYCGSV--CMED--ECGDWVTALCPY-GDDGCPDTQG-DYDVVMPEPMDGTSS-GYKVMVTDSSDESDYGCSGDFTLIASTEAPDATDMGA-YVSVTSPSDGDTAMAGGEYTVEFDYDNGLGSSVNRFAIDLYSSGGSGDCGTYVTTICDKPSIGCKDSQGDYDVVIPSGTESGMYSIRVGVFEDDDVYGCSDSFEIVGGE 246
BLAST of mRNA_P-littoralis_Contig140.9.2 vs. uniprot
Match: A0A6H5JY62_9PHAE (GPI-anchored domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JY62_9PHAE) HSP 1 Score: 218 bits (556), Expect = 1.670e-61 Identity = 121/253 (47.83%), Postives = 158/253 (62.45%), Query Frame = 3
Query: 255 ASVAVLTGMLTAAEALRVLTPWNGMTVVADRPVMTSWGGSGASPDDRFEIDLHYCGSYSFCFENDHDCGFLIANLCSNDGDSACMSQEEMSSQVVFPEPMNGVSNDGYRVRISEVGSET-FRCSDDFYLMSSADAPAAGEPGGPTVEVLAPDANSMALAGEMYTVEFGYDNGFGVSMGRFNIDLYEAQGPGDCGAYVTSICDKPGMGCHDTQGDYDIVIPQDTAVGMYKIRVGLFGADDVYGCSEAFEVVRSD 1010
A AV GML+AA AL V++P G++V+ADR W G+ RFEIDL+YC S FC D CG + LC D S + ++ PEPM+G S+ GY+V + E+ CSDDF L++S DAP AGE G ++ V +P A+AGE+YTVE+ Y+NGFG S RF +DLY G GDCG YVT++CD+P +GC D+QGDYD+ IP DT GMY IRVG+F + +Y CS+ FEV SD
Sbjct: 5 AFAAVAFGMLSAANALEVVSPDGGISVLADRAYTVEWTGTTTG---RFEIDLYYCNS--FCM--DDVCGDWVTALCPYGADGCPDSAGDYD--IIMPEPMSGTSS-GYKVMVKNAEDESDMGCSDDFTLIASEDAPEAGEMGY-SLTVTSPSDGDTAMAGEVYTVEWDYENGFGSSTDRFALDLYLVGGTGDCGTYVTTLCDQPSIGCPDSQGDYDVEIPSDTPAGMYSIRVGVFDDEMMYDCSDTFEVDTSD 246
BLAST of mRNA_P-littoralis_Contig140.9.2 vs. uniprot
Match: D7FH21_ECTSI (Imm downregulated 8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH21_ECTSI) HSP 1 Score: 194 bits (492), Expect = 1.050e-52 Identity = 104/209 (49.76%), Postives = 134/209 (64.11%), Query Frame = 3
Query: 261 VAVLTGMLTAAEALRVLTPWNGMTVVADRPVMTSWGGSGASPDDRFEIDLHYCGSYSFCFENDHDCGFLIANLCSNDGDSACMSQEEMSSQVVFPEPMNGVSNDGYRVRISEV-GSETFRCSDDFYLMSSADAPAAGEPGGPTVEVLAPDANSMALAGEMYTVEFGYDNGFGVSMGRFNIDLYEAQGPGDCGAYVTSICDKPGMGCHDT 884
VA+ GML AA AL+V TP G+TV+ADR W +G S D+RFEIDL+YCGS C E+ DCG + LC G+ C E +V PEPM+G S GY+VR+ ++ E CSD+FYL++S++AP+ G+ GPT+EV +P + +A YTVEF YDNG G + RF IDLY A G GDCG YV SICDKP +GC D+
Sbjct: 8 VALACGMLGAANALKVSTPSKGLTVIADRTYTVEW--TGTSSDNRFEIDLYYCGS--MCMED--DCGDWVTALCPY-GEDGCPDNEG-DYDIVMPEPMSGTSGSGYKVRVWDIHDEEDADCSDEFYLIASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVEFDYDNGVGSRVDRFAIDLYRADGDGDCGTYVQSICDKPTIGCKDS 208 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig140.9.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 17
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig140.9.2 >prot_P-littoralis_Contig140.9.2 ID=prot_P-littoralis_Contig140.9.2|Name=mRNA_P-littoralis_Contig140.9.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=276bp MSPSTSTSTTISTAAASVAVLTGMLTAAEALRVLTPWNGMTVVADRPVMTback to top mRNA from alignment at P-littoralis_Contig140:31129..44250+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig140.9.2 ID=mRNA_P-littoralis_Contig140.9.2|Name=mRNA_P-littoralis_Contig140.9.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=13122bp|location=Sequence derived from alignment at P-littoralis_Contig140:31129..44250+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig140:31129..44250+ >mRNA_P-littoralis_Contig140.9.2 ID=mRNA_P-littoralis_Contig140.9.2|Name=mRNA_P-littoralis_Contig140.9.2|organism=Pylaiella littoralis U1_48|type=CDS|length=828bp|location=Sequence derived from alignment at P-littoralis_Contig140:31129..44250+ (Pylaiella littoralis U1_48)back to top |