mRNA_P-littoralis_Contig140.9.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig140.9.1
Unique NamemRNA_P-littoralis_Contig140.9.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig140.9.1 vs. uniprot
Match: D8LEQ9_ECTSI (EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEQ9_ECTSI)

HSP 1 Score: 336 bits (862), Expect = 1.670e-102
Identity = 166/261 (63.60%), Postives = 206/261 (78.93%), Query Frame = 1 
Query:  253 STAAASVAVLTGML-----TAAEALRVLTPWNGMTVVADRPVMTSWGGSGASPDDRFEIDLHYCGSYSFCFENDYDCGFLIANLCSNDGDSACMSQEEMSSQVVFPEPMNGVSNDGYRVRISEVGSETFRCSDDFYLMSSADAPAAGEPGGPTVEVLAPDANSMALAGEMYTVEFGYDNGFGVSMGRFNIDLYEA---QGPGDCGAYVTSICDKPGMGCHDTQGDYDIVIPQDTAVGMYKIRVGLFGADDVYGCSEAFEVV 1011
            S++ AS+  L G+L     T+ EAL+VLTP    TVV+ RP + SW  +GAS DDRFEIDLHYCGSYS+CFE + +CGF +AN+C+    S CMSQ + SSQV FPEP+ G SN+GYR+RI+EVGS+T+RCSDDFYLMSSADAPA GE GGPT+EV+AP A+++A+AGE+YTVEF YDNGFG  +GRF IDLY+A    G GDCG +VTS+CDKP +GC D+QGDY++VIP D+  GMYKIRVGLFG D +Y CS +FEVV
Sbjct:    2 SSSVASLVALAGILGHTTITSTEALQVLTPAVAETVVSGRPYIVSW--NGASADDRFEIDLHYCGSYSYCFE-EAECGFWLANVCAEGDGSGCMSQADQSSQVTFPEPLGGRSNEGYRIRIAEVGSDTYRCSDDFYLMSSADAPAVGEDGGPTIEVVAPTADALAIAGEIYTVEFDYDNGFGEQLGRFKIDLYKALGEDGAGDCGTWVTSVCDKPDVGCLDSQGDYNVVIPTDSEDGMYKIRVGLFGDDTIYACSPSFEVV 259
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BLAST of mRNA_P-littoralis_Contig140.9.1 vs. uniprot
Match: A0A6H5KPZ5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KPZ5_9PHAE)

HSP 1 Score: 334 bits (857), Expect = 5.690e-102
Identity = 158/248 (63.71%), Postives = 196/248 (79.03%), Query Frame = 1 
Query:  277 VLTGMLTAAEALRVLTPWNGMTVVADRPVMTSWGGSGASPDDRFEIDLHYCGSYSFCFENDYDCGFLIANLCSNDGDSACMSQEEMSSQVVFPEPMNGVSNDGYRVRISEVGSETFRCSDDFYLMSSADAPAAGEPGGPTVEVLAPDANSMALAGEMYTVEFGYDNGFGVSMGRFNIDLYEAQGPGDCGAYVTSICDKPGMGCHDTQGDYDIVIPQDTAVGMYKIRVGLFGADDVYGCSEAFEVVRSD 1020
            VL   +T+ EALRVLTP    +V + RP + SW   GA  DDRFE+DLHYCGSYSFCF    DCGF IAN+C N+ D ACM Q++ SSQV FPEP+ G SN+GYRVRISEVG++ FRCS+DFYL++SAD    GEPGGPT+EV+AP+AN++A+AGE YTVEF YDNGFG  +GRF IDLY+A+G GDCG++VTS+CDKP MGC D++GDYD+VIP D+  GMYKIRVGLFG D +Y CS +FE+  ++
Sbjct:   14 VLGNTITSTEALRVLTPAVAESVASGRPYVVSW--QGAQADDRFEVDLHYCGSYSFCFGEAEDCGFWIANVC-NEADDACMIQDDQSSQVTFPEPVAGHSNNGYRVRISEVGTDNFRCSEDFYLVASADVLEFGEPGGPTMEVVAPEANALAVAGETYTVEFDYDNGFGEQLGRFKIDLYKAEGNGDCGSWVTSVCDKPDMGCRDSEGDYDVVIPADSEEGMYKIRVGLFGDDSIYACSPSFEITTTN 258
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BLAST of mRNA_P-littoralis_Contig140.9.1 vs. uniprot
Match: D7FN59_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN59_ECTSI)

HSP 1 Score: 333 bits (853), Expect = 1.170e-101
Identity = 164/253 (64.82%), Postives = 198/253 (78.26%), Query Frame = 1 
Query:  265 ASVAVLTGML----TAAEALRVLTPWNGMTVVADRPVMTSWGGSGASPDDRFEIDLHYCGSYSFCFENDYDCGFLIANLCSNDGDSACMSQEEMSSQVVFPEPMNGVSNDGYRVRISEVGSETFRCSDDFYLMSSADAPAAGEPGGPTVEVLAPDANSMALAGEMYTVEFGYDNGFGVSMGRFNIDLYEAQGPGDCGAYVTSICDKPGMGCHDTQGDYDIVIPQDTAVGMYKIRVGLFGADDVYGCSEAFEVV 1011
            A +A LTGML    T  EALRVLTP    TVV+D P + SW   GASPDDRFEIDLHYCGSYSFCFE   +CGF + NLC+ +GD ACM+Q+++ SQV  PEP++G SN GYRVRI +VG+ETFRCSD+FYLMSSADA    +  GPT+EV+AP + ++A+AG +YTVEF YDNGFG   GRF IDLY A+G GDCG +V+S+CDKP +GCHDT+GDYDIVIP+D+  GMYKIRVGLFG D V+ CS +FEVV
Sbjct:    6 AFIAALTGMLGNIITDTEALRVLTPAVAETVVSDMPYIVSW--KGASPDDRFEIDLHYCGSYSFCFEEADECGFWVTNLCA-EGDDACMNQDDLMSQVTLPEPVDGHSNSGYRVRIGKVGTETFRCSDEFYLMSSADA---SDQDGPTMEVVAPSSGALAVAGAVYTVEFDYDNGFGAQQGRFKIDLYHAEGTGDCGDWVSSVCDKPDVGCHDTEGDYDIVIPRDSEGGMYKIRVGLFGDDSVFACSASFEVV 252
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BLAST of mRNA_P-littoralis_Contig140.9.1 vs. uniprot
Match: D8LI46_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI46_ECTSI)

HSP 1 Score: 240 bits (612), Expect = 6.020e-68
Identity = 126/249 (50.60%), Postives = 165/249 (66.27%), Query Frame = 1 
Query:  289 MLTAAEALRVLTPWNGMTVVADRPVMTSWGGSGASPDDRFEIDLHYCGSYSFCFENDYDCGFLIANLCSNDGDSACMSQEEMSSQVVFPEPMNGVSNDGYRVRISEVGSE-TFRCSDDFYLMSSADAPAAGEPGGPTVEVLAPDANSMALAGEMYTVEFGYDNGFGVSMGRFNIDLYEAQGPGDCGAYVTSICDKPGMGCHDTQGDYDIVIPQDTAVGMYKIRVGLFGADDVYGCSEAFEVVRSDLSMD 1032
            ML AA AL V+TP  G  VVA R     W G+G++  +R+EIDL+YCGS   C E+  +CG  +  LC   G+  C   E     +V PEPM+G S  GY+VR+++V  + +  CSD+FYLM+ A+AP+AG+ GGP V V +P +   A AGE YTVEF YDNG G S+GRF IDLY A G GDCG ++ ++CDKP +GC D+ GDYD+ IP+D   GMY IRVG F  D VYGCS+ FE++ +D S D
Sbjct:    1 MLGAASALEVVTPAEGDIVVASRAYTVEWTGTGSN--NRYEIDLYYCGS--MCMED--ECGDWVTALCPY-GEDGCPDNEG-DYDIVMPEPMSGTSGSGYKVRVADVDDDDSGDCSDEFYLMAHAEAPSAGDAGGPYVTVTSPSSGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYSATGSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDDSVYGCSDEFEILGADDSPD 241
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BLAST of mRNA_P-littoralis_Contig140.9.1 vs. uniprot
Match: A0A6H5JRG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRG9_9PHAE)

HSP 1 Score: 234 bits (598), Expect = 3.660e-66
Identity = 126/251 (50.20%), Postives = 158/251 (62.95%), Query Frame = 1 
Query:  271 VAVLTGMLTAAEALRVLTPWNGMTVVADRPVMTSWGGSGASPDDRFEIDLHYCGSYSFCFENDYDCGFLIANLCSNDGDSACMSQEEMSSQVVFPEPMNGVSNDGYRVRISEV-GSETFRCSDDFYLMSSADAPAAGEPGGPTVEVLAPDANSMALAGEMYTVEFGYDNGFGVSMGRFNIDLYEAQGPGDCGAYVTSICDKPGMGCHDTQGDYDIVIPQDTAVGMYKIRVGLFGADDVYGCSEAFEVVRSD 1020
            VA+  GML AA AL+V TP  G+TV+ADR     W  +G S D+RFEIDL+YCGS   C E+  DCG  +  LC   G+  C   E     +V PEPM G S  GY+VR+ ++   E   CSD+FYL++S++AP+ G+  GPT+EV +P +  +A     YTVEF YDNG G S+ RF IDLY A G GDCG YV SICDKP +GC D+ GDYD+ IP DT  G YKIRV  F  D +Y CS  F +   D
Sbjct:    7 VALACGMLGAANALKVSTPSKGLTVIADRTYTVEW--TGTSSDNRFEIDLYYCGS--MCMED--DCGDWVTALCPY-GEDGCPDNEG-DYDIVMPEPMLGTSGSGYKVRVWDIHDEEDADCSDEFYLLASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVEFDYDNGVGSSVDRFAIDLYRADGEGDCGTYVQSICDKPTIGCKDSMGDYDVEIPCDTDAGEYKIRVARFEDDSLYSCSGTFTIEEGD 249
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BLAST of mRNA_P-littoralis_Contig140.9.1 vs. uniprot
Match: D7FYL2_ECTSI (EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYL2_ECTSI)

HSP 1 Score: 228 bits (580), Expect = 6.970e-64
Identity = 126/251 (50.20%), Postives = 155/251 (61.75%), Query Frame = 1 
Query:  271 VAVLTGMLTAAEALRVLTPWNGMTVVADRPVMTSWGGSGASPDDRFEIDLHYCGSYSFCFENDYDCGFLIANLCSNDGDSACMSQEEMSSQVVFPEPMNGVSNDGYRVRISEVGSE-TFRCSDDFYLMSSADAPAAGEPGGPTVEVLAPDANSMALAGEMYTVEFGYDNGFGVSMGRFNIDLYEAQGPGDCGAYVTSICDKPGMGCHDTQGDYDIVIPQDTAVGMYKIRVGLFGADDVYGCSEAFEVVRSD 1020
            VA+   ML AA AL V+TP   + VVADR     W G+ +    RFEIDL++CGS   C E+   CG  +  LC   G+  C   E     +V PEPM+G SN GY+VR+ +V  E +  CSD FYLM+S DAP AG   G  + V +P     A AGE YTVEF YDNG G  + RF+IDLY A G GDCG YVTSICDKP +GC D+ GDYD+ IP DT  G YKIRVG F  +++YGCS  F ++  D
Sbjct:    7 VALACAMLGAANALEVVTPSADLIVVADRTYTVEWTGADSG---RFEIDLYHCGS--MCMED--SCGDWVTALCPY-GEEGCPDNEG-DYDIVMPEPMSGESNSGYKVRVMDVSDEDSMDCSDAFYLMASEDAPDAGSESGYFLTVTSPAEGDSAEAGEEYTVEFDYDNGVGSKVDRFSIDLYMADGDGDCGTYVTSICDKPSIGCKDSMGDYDVEIPADTEAGDYKIRVGRFEDEELYGCSGTFTIMGGD 248
[Close]
BLAST of mRNA_P-littoralis_Contig140.9.1 vs. uniprot
Match: D7G3F0_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F0_ECTSI)

HSP 1 Score: 218 bits (556), Expect = 1.120e-60
Identity = 125/261 (47.89%), Postives = 166/261 (63.60%), Query Frame = 1 
Query:  265 ASVAVLTGMLTAAEALRVLTPWNGMTVVADRPVMTSWGGSGASPDDRFEIDLHYCGSYSFCFENDYDCGFLIANLCSNDGDSACMSQEEMSSQVVFPEPMNGVSNDGYRVRISEVGSET-FRCSDDFYLMSSADAPAAGEPGGPTVEVLAPDANSMALAGEMYTVEFGYDNGFGVSMGRFNIDLYE-AQGPGDCGAYVTSICDKPGMGCHDTQGDYDIVIPQDTAVGMYKIRVGLFGADDVYGCSEAFEVV--RSDLSMDL 1035
            A  A+  GML AA AL V++P  G++V+ADR     W G+    D RFEIDL+YCGS  FC E+  +CG  +  LC    D    +Q +    +V PEPM G S+ GY+V +++   E+   CS DF L++S DAPAAGE G  ++ V +P     A+AG +YTVE+ Y+NG G S  RF IDLY    G GDCG YV ++CDKP +GC D+QGDYD+ IP DT  GMY +RVG+F  D ++ CSE FE+V  R+D+SM L
Sbjct:    5 AFAALAFGMLGAANALEVVSPAAGISVIADRTYTVEWTGTS---DSRFEIDLYYCGS--FCMED--ECGDWVTALCPYGADGCPDTQGDYD--IVMPEPMAGTSS-GYKVVVTDSNDESSMGCSGDFTLVASTDAPAAGEVGY-SLTVTSPSDGDTAMAGGVYTVEWDYENGLGSSTDRFAIDLYSYGTGTGDCGTYVATLCDKPSIGCPDSQGDYDVEIPSDTPAGMYSVRVGVFSDDMMFDCSEGFEIVNDRTDMSMRL 254
[Close]
BLAST of mRNA_P-littoralis_Contig140.9.1 vs. uniprot
Match: D7G3E8_ECTSI (Imm upregulated 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3E8_ECTSI)

HSP 1 Score: 217 bits (553), Expect = 2.670e-60
Identity = 123/250 (49.20%), Postives = 159/250 (63.60%), Query Frame = 1 
Query:  265 ASVAVLTGMLTAAEALRVLTPWNGMTVVADRPVMTSWGGSGASPDDRFEIDLHYCGSYSFCFENDYDCGFLIANLCSNDGDSACMSQEEMSSQVVFPEPMNGVSNDGYRVRISEVGSET-FRCSDDFYLMSSADAPAAGEPGGPTVEVLAPDANSMALAGEMYTVEFGYDNGFGVSMGRFNIDLYEAQGPGDCGAYVTSICDKPGMGCHDTQGDYDIVIPQDTAVGMYKIRVGLFGADDVYGCSEAFEVV 1011
            A  A+  GML AA AL V++P  G  VVAD      W G+ +    R++IDL+YCGS   C E+  +CG  +  LC   GD  C   +     VV PEPM+G S+ GY+V +++   E+ + CS DF L++S +AP A + G   V V +P     A+AG  YTVEF YDNG G S+ RF IDLY + G GDCG YVT+ICDKP +GC D+QGDYD+VIP  T  GMY IRVG+F  DDVYGCS++FE+V
Sbjct:    5 AFAALAFGMLGAANALEVVSPAAGDMVVADSAYTVEWTGATSG---RYDIDLYYCGSV--CMED--ECGDWVTALCPY-GDDGCPDTQG-DYDVVMPEPMDGTSS-GYKVMVTDSSDESDYGCSGDFTLIASTEAPDATDMGA-YVSVTSPSDGDTAMAGGEYTVEFDYDNGLGSSVNRFAIDLYSSGGSGDCGTYVTTICDKPSIGCKDSQGDYDVVIPSGTESGMYSIRVGVFEDDDVYGCSDSFEIV 243
[Close]
BLAST of mRNA_P-littoralis_Contig140.9.1 vs. uniprot
Match: A0A6H5JY62_9PHAE (GPI-anchored domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JY62_9PHAE)

HSP 1 Score: 214 bits (546), Expect = 2.490e-59
Identity = 120/253 (47.43%), Postives = 159/253 (62.85%), Query Frame = 1 
Query:  265 ASVAVLTGMLTAAEALRVLTPWNGMTVVADRPVMTSWGGSGASPDDRFEIDLHYCGSYSFCFENDYDCGFLIANLCSNDGDSACMSQEEMSSQVVFPEPMNGVSNDGYRVRISEVGSET-FRCSDDFYLMSSADAPAAGEPGGPTVEVLAPDANSMALAGEMYTVEFGYDNGFGVSMGRFNIDLYEAQGPGDCGAYVTSICDKPGMGCHDTQGDYDIVIPQDTAVGMYKIRVGLFGADDVYGCSEAFEVVRSD 1020
            A  AV  GML+AA AL V++P  G++V+ADR     W G+      RFEIDL+YC S  FC ++   CG  +  LC    D    S  +    ++ PEPM+G S+ GY+V +     E+   CSDDF L++S DAP AGE G  ++ V +P     A+AGE+YTVE+ Y+NGFG S  RF +DLY   G GDCG YVT++CD+P +GC D+QGDYD+ IP DT  GMY IRVG+F  + +Y CS+ FEV  SD
Sbjct:    5 AFAAVAFGMLSAANALEVVSPDGGISVLADRAYTVEWTGTTTG---RFEIDLYYCNS--FCMDD--VCGDWVTALCPYGADGCPDSAGDYD--IIMPEPMSGTSS-GYKVMVKNAEDESDMGCSDDFTLIASEDAPEAGEMGY-SLTVTSPSDGDTAMAGEVYTVEWDYENGFGSSTDRFALDLYLVGGTGDCGTYVTTLCDQPSIGCPDSQGDYDVEIPSDTPAGMYSIRVGVFDDEMMYDCSDTFEVDTSD 246
[Close]
BLAST of mRNA_P-littoralis_Contig140.9.1 vs. uniprot
Match: D7FH21_ECTSI (Imm downregulated 8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH21_ECTSI)

HSP 1 Score: 191 bits (485), Expect = 2.730e-51
Identity = 104/209 (49.76%), Postives = 134/209 (64.11%), Query Frame = 1 
Query:  271 VAVLTGMLTAAEALRVLTPWNGMTVVADRPVMTSWGGSGASPDDRFEIDLHYCGSYSFCFENDYDCGFLIANLCSNDGDSACMSQEEMSSQVVFPEPMNGVSNDGYRVRISEV-GSETFRCSDDFYLMSSADAPAAGEPGGPTVEVLAPDANSMALAGEMYTVEFGYDNGFGVSMGRFNIDLYEAQGPGDCGAYVTSICDKPGMGCHDT 894
            VA+  GML AA AL+V TP  G+TV+ADR     W  +G S D+RFEIDL+YCGS   C E+  DCG  +  LC   G+  C   E     +V PEPM+G S  GY+VR+ ++   E   CSD+FYL++S++AP+ G+  GPT+EV +P +  +A     YTVEF YDNG G  + RF IDLY A G GDCG YV SICDKP +GC D+
Sbjct:    8 VALACGMLGAANALKVSTPSKGLTVIADRTYTVEW--TGTSSDNRFEIDLYYCGS--MCMED--DCGDWVTALCPY-GEDGCPDNEG-DYDIVMPEPMSGTSGSGYKVRVWDIHDEEDADCSDEFYLIASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVEFDYDNGVGSRVDRFAIDLYRADGDGDCGTYVQSICDKPTIGCKDS 208
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig140.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
D8LEQ9_ECTSI1.670e-10263.60EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LE... [more]
A0A6H5KPZ5_9PHAE5.690e-10263.71Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FN59_ECTSI1.170e-10164.82EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D8LI46_ECTSI6.020e-6850.60EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5JRG9_9PHAE3.660e-6650.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FYL2_ECTSI6.970e-6450.20EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FY... [more]
D7G3F0_ECTSI1.120e-6047.89EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D7G3E8_ECTSI2.670e-6049.20Imm upregulated 4 n=1 Tax=Ectocarpus siliculosus T... [more]
A0A6H5JY62_9PHAE2.490e-5947.43GPI-anchored domain-containing protein n=2 Tax=Ect... [more]
D7FH21_ECTSI2.730e-5149.76Imm downregulated 8 n=1 Tax=Ectocarpus siliculosus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig140contigP-littoralis_Contig140:18709..25709 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size3844
Hectar predicted targeting categorysignal peptide
Exons6
Cds size828
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig140.9.1prot_P-littoralis_Contig140.9.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig140 18950..22912 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789653.729311-UTR-P-littoralis_Contig140:18708..189131680789653.729311-UTR-P-littoralis_Contig140:18708..18913Pylaiella littoralis U1_48UTRP-littoralis_Contig140 18709..18913 +
1680789653.7381227-UTR-P-littoralis_Contig140:18935..189491680789653.7381227-UTR-P-littoralis_Contig140:18935..18949Pylaiella littoralis U1_48UTRP-littoralis_Contig140 18936..18949 +
1680789653.8017247-UTR-P-littoralis_Contig140:22912..257091680789653.8017247-UTR-P-littoralis_Contig140:22912..25709Pylaiella littoralis U1_48UTRP-littoralis_Contig140 22913..25709 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789653.7504761-CDS-P-littoralis_Contig140:18949..190861680789653.7504761-CDS-P-littoralis_Contig140:18949..19086Pylaiella littoralis U1_48CDSP-littoralis_Contig140 18950..19086 +
1680789653.7618513-CDS-P-littoralis_Contig140:20775..208751680789653.7618513-CDS-P-littoralis_Contig140:20775..20875Pylaiella littoralis U1_48CDSP-littoralis_Contig140 20776..20875 +
1680789653.7709813-CDS-P-littoralis_Contig140:21387..216901680789653.7709813-CDS-P-littoralis_Contig140:21387..21690Pylaiella littoralis U1_48CDSP-littoralis_Contig140 21388..21690 +
1680789653.7847753-CDS-P-littoralis_Contig140:21978..221141680789653.7847753-CDS-P-littoralis_Contig140:21978..22114Pylaiella littoralis U1_48CDSP-littoralis_Contig140 21979..22114 +
1680789653.7934413-CDS-P-littoralis_Contig140:22760..229121680789653.7934413-CDS-P-littoralis_Contig140:22760..22912Pylaiella littoralis U1_48CDSP-littoralis_Contig140 22761..22912 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig140.9.1

>prot_P-littoralis_Contig140.9.1 ID=prot_P-littoralis_Contig140.9.1|Name=mRNA_P-littoralis_Contig140.9.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=276bp
MSPSTSTSTTFSTAAASVAVLTGMLTAAEALRVLTPWNGMTVVADRPVMT
SWGGSGASPDDRFEIDLHYCGSYSFCFENDYDCGFLIANLCSNDGDSACM
SQEEMSSQVVFPEPMNGVSNDGYRVRISEVGSETFRCSDDFYLMSSADAP
AAGEPGGPTVEVLAPDANSMALAGEMYTVEFGYDNGFGVSMGRFNIDLYE
AQGPGDCGAYVTSICDKPGMGCHDTQGDYDIVIPQDTAVGMYKIRVGLFG
ADDVYGCSEAFEVVRSDLSMDLVAL*
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mRNA from alignment at P-littoralis_Contig140:18709..25709+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig140.9.1 ID=mRNA_P-littoralis_Contig140.9.1|Name=mRNA_P-littoralis_Contig140.9.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=7001bp|location=Sequence derived from alignment at P-littoralis_Contig140:18709..25709+ (Pylaiella littoralis U1_48)
CGGTCCCACCTTGTCACACTCCTCAACCTCCCTACCCAAGCCCTCAGCAA
CAGGACAGTAACAGCAACAGGACAGCAACAACAGTAACAGCACTTCAGCA
GCAAGGGTAATCTACACACTCAAGGACTTGAGAGGAATTCCAGCAGCACT
CAAGATCAACAACAGCAACAGCAACAACAACAACAACAACAACAACAACA
ACAACAACAACAACAACAACAACGACAACAGCAGCAGAGAGATGTCTCCT
TCTACCAGCACATCGACGACCTTCTCCACTGCTGCTGCCTCTGTGGCTGT
ACTGACGGGCATGTTGACTGCTGCCGAGGCGCTGCGGGTGCTGACGCCTT
GGAATGGAATGACGGTCGTTGCAGACAGGTGGGTTGCCAAGTCGTTCTTC
TTGCTTTGGGGTTGTTGCACGTCTTCTACAAATATACAGCAGCTGTATGC
ACAGCAGAACGGAGGCCTCGGGAGGCGTCGGATTTCAAATGAGCCCGAAG
GCAAATTCGGACTATCCGCACAACAAGCATCTAGTGCTCGTTTCGTGTGT
AGCAGCGGGACACACACGCGCACACAAACGCCCAAAGGAAAGGAGGGTCG
GTCTTGTGACTGCGGCTGCAGTAGACACACACGCCTACCGGGTACTAGTT
GTGGTATTTCAATCTCCGTGTTAAGACTGTTTCGGACTGGGAAAGAAATT
CAGAATTAAGCTTTTAATGATTTAGAAACAAGGACCGTACCCCTGAACGG
GACTGACAGTTCTGTTTTATTTCCGGGACCTCGGGGGACTTCGCTTTCAG
ATTTATACAAGTATAACAGCTATTTTGGGATCTTGTTTCTAAATGATTTT
CTCTCCTCTCGCTCTCAGAAATAAAGCGTCATGGGGAACAACTAGGCCAC
CAGGCACACACTGGCTACACTTTCGCCATGCAGAATCTTCCATCAGTGAC
AACCTGCTCGAACGACATAGCCACAGGTTTTGTGGCTGAGGTGCTCTCGG
CAGGCCCACGTACGTACGTGTATATAGCCACCGCGGTAGTACTGCTATGA
TGCTGCTGCTGCCGTGTGCTTGCCGTATGATAAAAGAGCATATTTTTATT
TTCTGCTTCTACTGCTGTATATATGCAGCCCAAGTCTCGAGCTCCTCGTG
TTGTGACATCAGAAGCATACTGTACGTACATATTATTATATGCATACTTC
GAAGTATATGTATTGTGATGATGCTGCTGTGTCTTAGTGGTGACTGTACC
CACGGAAGACTGTTGTCTTTTTTGGACACCAGTCAGTGGAGGGGACGAGA
GGGCACAAGCACACGACAGAGCACAGCAACAACAGCAGAAAGTAGTACCC
ACGGAGGTGTGTGTTATCCCTTTCATTGGACGCCACTCTACCCCTTTCGG
GTAGGTAGACGCTCCAACCGGGGTCACACAGGGGGAAGTCAACACAGGAT
TTTTTTTTTCTCCACTTCCCTCTGCGGTGCTTGCCTTATTTTGGTTGAGC
TTTTATCGCGAGAAAGAGGACAGCGATCGATCCCTTTCCCTCGATGATAC
GATCGAATTTTGTTTACTCACGAATTGATCGCTTTCCACTTTCACGCGCA
ATGTGAGAAAAAGCCCCAGATCGTGTTACTGCACTGGGATTCGAACTCAC
GCGTGAATGTCAGAAGGTTGCGTGGATCACCAACTTGAAACACCGGGGTG
ACCGGTGGACAAAGCAAAAGCAACAACACTGATTTTGTTTTTGAGAGACA
CAACAAGGAAGGGCCCACACCGCATTATGTTCTCTCCCTGCAGAAAAAGC
TAAAGAGATTAGCTAAATGTGATGAGAGCTACCCACCGCGGTGTCAGCAG
TATCGGTCATGTACGACCTACTCTTACCACTTAAATCTGAAACTGTTCGC
CTTCAGGAGTGGTCTGCGGATCGCCGCTTATATTATGTACTTCGAAGTAC
TTCGTATGTACGTATTACGATGCCCCCGAGTTCATATGGTTTATCTTGTC
AGCTAGTGAACGCTTGTCTTGTGTTCGTCGCCTTCCAGTCTTATGCTTCC
CTTCGCTCTCTCCACAGGCCCGTCATGACGTCGTGGGGGGGCTCGGGCGC
ATCGCCGGACGACCGCTTCGAGATCGACCTGCACTACTGCGGCTCGTACT
CTTTCTGTTTTGAAAACGTGAGAGCAACGAACAAAAGGCAGACAGATCCA
GTAGTATCCATTCAAGACTTTGTACGAGTACTGCAGTAGAGAGTCGAATC
GTTATTGTAATAACCTCATGAAAGTACTTCGTAAATGATTTATGTGATGA
TTTGTAGAAACACAGCAGATGTGTTGAAGCAATCTACTCACACGTTGTGT
TCCGTCGCTAATCTACTCTTACTAATAACGAGACCCTCGCCTGGGAGAAA
CGAATACCTAAGTATGATATGATACATTGCCGCATTCCTCGTGGAAGGAT
TTACGTAAGAACTGTATAAACTTGTGCGTAAACTGCGTTGCATCTCAGAC
ACTACCAGCCAATCCTAGGGAGAGAACGGGTAGGTGGGTGGGGCGCCCGC
AGTTTTCCGATTGGCCAACATTTTTTCTAGAAACCATGTGCCTCCCTGCT
CGTATGGCCAACTCGCACTTTCTACTATTACATCTAATTCCCACAAAATA
AAAAATCCGAAATTCATTCTGACGGGCAGGACTACGACTGCGGGTTCTTG
ATAGCCAACCTCTGCAGCAACGACGGCGACTCTGCGTGCATGAGCCAGGA
GGAGATGAGCTCCCAGGTCGTGTTCCCGGAGCCCATGAACGGAGTCTCGA
ACGACGGCTACAGGGTGCGAATAAGCGAAGTCGGAAGCGAGACGTTCCGC
TGCTCCGACGACTTTTACCTCATGTCCTCGGCGGACGCACCCGCAGCCGG
AGAGCCCGGGGGGCCGACAGTGGAGGTTCTGGCCCCTGACGCGAACTCGA
TGGCGTTGGCCGGCGAGATGTACACTGTTGAGGTGAGATTTTACTACGAG
TAATTAGGTTGGGAGCTCGCAAAGTAAAGCCGTCAGTTATTGCTTTCTGT
ATTGGTTGGTTTATAGTTGTTTTTTGGTCCTGTTTTTTGGGCCGGCGTTT
GTACAGTACCCGGTAGGAGGGAGGCGGACGCGGATGGATCAGGTCCAAAA
TACTTCGAAGCACGTCCTTCTTTTAAACAATACACGAAATATTTCATTTA
AAACCACCGGTTTTAACTCACACTGCTGCACTGTGCTGGAATGTGGTGAA
AAATGTTACCCCTGCTGCAGTTTGGGTACGACAATGGCTTCGGCGTGAGC
ATGGGGCGGTTCAACATCGACCTGTACGAGGCGCAGGGGCCCGGGGACTG
CGGGGCTTATGTTACCAGTATCTGCGACAAGCCCGGCATGGGGTGCCACG
ACACCCGTGAGTAAAATATAACAAAGCATGCTCATGCACATCTGAGTTAT
TTACGAAGTATCCGAAGTCATGTACAAGTAATGTACGATTCATTTGGTGC
AGCAGTTCATTCCATATCGGGTCGTTCACTCACAAAGTTCACCCACTAAG
GTATGCATCATGGAGAGAAAGTGGGCAACTGCCACATATCACTAGATGCA
GCAAAGCTGCTAAATGTGCTTATTTCAAGAGAGGCTAGACATAAATGGTG
GGGCGAAATCGTCTACGAAGCAGTTCGCAGAAGCAGTTCGCAGAACCTGT
AAATATATGCGTGTTTGCATCCCATTTGTTATGAGCACTTGTCTCCAACT
TTCTGTTTTGAGTGGGTGTGCACCAGCCGGGGGCCACATGGAAGGAAGGT
CACACGAGAGTTTTTTTGTCTCTTCCTCCACCACCTTCGTGGTGCTTGTC
TCGTACGTGCAAAGTACAGCAGTATTTACAGTATGATCGTTCCCTTAAAA
TGAAGAGAGGTCGGCTACAAGTACATTCAACATGTGATGACAAAATAATC
ATAAAACTTTGTGCTGGTTAACGCTTTGTTGTGCTAAAATGCTTGATCCC
CCCAACTATTTGTATTTTTTCGTTGTTCGCCCTAACCAAACAAAAACAAC
AGAGGGCGACTACGACATCGTCATCCCCCAAGACACGGCTGTCGGCATGT
ACAAGATCCGCGTCGGCCTGTTCGGTGCAGACGATGTGTACGGGTGCTCC
GAGGCGTTCGAGGTGGTCCGCAGCGATCTCTCGATGGACCTTGTCGCCCT
ATAAAAAGGAAATTATTCTTTAAACTCCAGTAAATAACAACCAACCGTGA
GTTTGATCTACACGTCGTGAGGGGTACTCGGTCAAGTCAAATCCAGCAAG
CGGGGTGGTAAGTGTTCTTGAACACTCCCAAAAGTAGCAGTAGTTTTTAA
CGCGATACGTTTTGGGTGAGCGTGCTCTGCTTGCTCTGCCAACAGTTGCG
GTGGTGGTGGTAGTCGTAGCAGCTGAATTATCATACATGAGTTTTTTTTT
TGTGGATGTCGTCGGTGTCGTCAAGTCGTCGGTGCCGATAGGGTGGCGGG
AGAACGCACACACACCTACTACTAATACTTTTTTGAGAAGTATATTGGTT
TGTGAGAGGTACTAGTGCTTTATTATGAAGGATCCACTTCTTCCTTGGAC
GGGTAAGGATCCACTTCTTCCTTGGAAGGGTATGCATGCGATCCGCCGGT
TGTTTGTTTCACTGCCTGGGTTGGGTTCGGTAGGGTTGTGGGAGAGCTTC
GGCTAGTAAAAAAGTGAGTTTCGCCCGGCATGGCTGTTGTTGTGTGTTGT
GTGTGTGTGTTGTCATTATATCAGATATTCTGCGACCAATCGTCGTGAGG
GCTTGTTTGTTGTTTTGCGTAGTAGTGGTAGTTTGAAGACTTTTTTTTAC
GTTCCCTCGTGAATCTCAGGATCTGTGACAAAATAAAAAGTTGATTTTGT
TGTTCAAGTCAAGGAAGGCGAGGCGAGGGGTGTGGGCGAGTTACCTCTTG
CAATCTACACGTACGTTCCCATGTTTTTCTTTTCGTGGTGTTTGTTTGAT
TGATTATTGACTTTTTTATGTTGTACATTTTATACCGAATCTACCTGGCC
TGGGAGATGTGATGTTCTTGTATTTGATCATTGAACTTTGGTGGTGATTC
TACCTTGCTTGCTTGTCGTCTGTTGTTGTTGATGCTTTTGAGTAATTGAT
CATTGAACCTTGGTCGTGATCTCCACTTCTCTGTTGATTGTCTGTTGTTG
GGTTGTTGGTTGGTTTTGTGACTTTTGGAAAGATAGGCAGGGTGTGTTCG
TCTTTGGGTATGGACAAAACGATTTTGTTGAGACGAGAGAGCCAGCCGTG
TTGTGATGATGATCCACACTGTTGACTATTTCATCATGTGGTTAAAAAAG
TACACAAGTATTTTTTCGTAGGTCTGTTAGATGTCGTTTGTTTGCTTGTG
TCGCGGTGTATTGGCCGATTCCTGTGACCCAAAGAGGAGTGATGCGTGAT
GATACATACATGTCTTCGGACGAGTAAGGTGTTGATTGTTTGTCGTGTGT
TCCTTGTCTGCGGACAGACGAGTAATGATAAAAAGAGACTGGCGAATGTA
CCCGTTTTTGTCTTTATATAGATACGAGGAGGCGCAAGAGTGGAGATACA
GGGAATACGTGTGTGGGGGGGGAGGCATGTACATGTATCGTGGGTTATAT
ACAGAGGGCGCCCGCAAGTAAGAAACGTAAAATATGGGTTGAGCCTCGAT
TTCCTATTTGCTGGCCTGTGTACCAGCCTTGGTGCTGATTTTTCCTATTC
GCGGTTTCTTATTGTTGGGGCCTTGCAGGAATTGCACTCTCTCTTGAGGA
GGTGCTGATTGATATCAGTGACTTGGCCGCTAGTCAGCTGATCTGTTATG
GCCAACAAGTCGTCCAAGCTGTCGATCGAGGCAGTGGGAAGGGCCATCAT
GCCCGACCATGTGTCGACACACCAGTACCATCATGCCAACATGGCGCCCG
GTCTGAACAGGGGGGTTCGCATATGTTTGTACCATACCCATAGGTCACCA
AAAATACATCCACCATGTGGTAGGGGTGGGCACTGGGCTCCAACGGCCGT
CGTTTCATATTTTTCTAACCCTCTCCTATGCGCTTCGTTTCTTGTGGTTT
GGAGCGGTCTTGCCCTCAGTTTCTTGTTGGGGTTTTTCTTACTTGATGGC
CCAGGTTGAGGTGTGTTTCTTAGCGGATTTTTCTTATTTTTCGCAGAAAT
CTGAGCCTAAATTTCTTACTTAAATTTTTCGTACTTGCGGGCGCCCTCTG
TATGGGAGGAGAAATCACGCCGCCGTTGATTAGTTTCCCGAGGGAAAGCG
TTTTATAGCAAATTAATTCAATTGGTCGACGGAGGCCTCCTATTTTTTTG
CCGCAGCCGTGTGGATCTGGTACAGATAGATGCACAGGCGGGCGGGGGAT
GGATGTATGCGCGGCTGACGAGGGGTCAAAACGTCGCCTGATTTGTTTTT
GTGTGCAAATGTGAGCATGTCCTTTTTTTTTTTTTTCGTCTTGGAAGGTG
ACGGAGCAAGTAGTAGGCGATATGTGAGTAGATGTCAATGCATCCCTCCG
CCGCCTGGACTTCCGAGAGCGAAAACATCGCGGGAATGTAAATTCCGTTT
TGCTCGCAGCTTGACTGGTGGCGCTCCATCGTAACAAAATACTCCGTAGT
AAATTCCGTACCCTAAGTTCGCCGGTCGCCCCGGTGGTTGAGTTGGTAAT
CCACTACCGGTAGTAGTAACCTTCTGGCGTTCACGCGTGAGTTCGAATCC
CATCGCAGTAACACGATCTAGGTTTTCTTCTCACAATTCGCGTGAAAGTG
GAAAGCGATTAATTCGTGGGTAAAGAAAATGCGATCGTACCATCGACGAG
GGAAAGGGATTGCTGTCCCCTTTCTCTGAACGTTTCATATTTTTTTGCTT
TACACACATGCTCAGGTGAACATCGACACGCCGAAACGCTGCTTGAACCT
TTCAGAAGTATGGGTGTGAAAAAAAAAAAATCGAAAGAAAATGAAAATCA
C
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Coding sequence (CDS) from alignment at P-littoralis_Contig140:18709..25709+

>mRNA_P-littoralis_Contig140.9.1 ID=mRNA_P-littoralis_Contig140.9.1|Name=mRNA_P-littoralis_Contig140.9.1|organism=Pylaiella littoralis U1_48|type=CDS|length=828bp|location=Sequence derived from alignment at P-littoralis_Contig140:18709..25709+ (Pylaiella littoralis U1_48)
ATGTCTCCTTCTACCAGCACATCGACGACCTTCTCCACTGCTGCTGCCTC
TGTGGCTGTACTGACGGGCATGTTGACTGCTGCCGAGGCGCTGCGGGTGC
TGACGCCTTGGAATGGAATGACGGTCGTTGCAGACAGGCCCGTCATGACG
TCGTGGGGGGGCTCGGGCGCATCGCCGGACGACCGCTTCGAGATCGACCT
GCACTACTGCGGCTCGTACTCTTTCTGTTTTGAAAACGACTACGACTGCG
GGTTCTTGATAGCCAACCTCTGCAGCAACGACGGCGACTCTGCGTGCATG
AGCCAGGAGGAGATGAGCTCCCAGGTCGTGTTCCCGGAGCCCATGAACGG
AGTCTCGAACGACGGCTACAGGGTGCGAATAAGCGAAGTCGGAAGCGAGA
CGTTCCGCTGCTCCGACGACTTTTACCTCATGTCCTCGGCGGACGCACCC
GCAGCCGGAGAGCCCGGGGGGCCGACAGTGGAGGTTCTGGCCCCTGACGC
GAACTCGATGGCGTTGGCCGGCGAGATGTACACTGTTGAGTTTGGGTACG
ACAATGGCTTCGGCGTGAGCATGGGGCGGTTCAACATCGACCTGTACGAG
GCGCAGGGGCCCGGGGACTGCGGGGCTTATGTTACCAGTATCTGCGACAA
GCCCGGCATGGGGTGCCACGACACCCAGGGCGACTACGACATCGTCATCC
CCCAAGACACGGCTGTCGGCATGTACAAGATCCGCGTCGGCCTGTTCGGT
GCAGACGATGTGTACGGGTGCTCCGAGGCGTTCGAGGTGGTCCGCAGCGA
TCTCTCGATGGACCTTGTCGCCCTATAA
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