mRNA_P-littoralis_Contig140.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig140.1.1
Unique NamemRNA_P-littoralis_Contig140.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig140.1.1 vs. uniprot
Match: A0A6H5JR14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR14_9PHAE)

HSP 1 Score: 178 bits (452), Expect = 1.130e-49
Identity = 81/110 (73.64%), Postives = 99/110 (90.00%), Query Frame = 1 
Query:   70 LFFHGNFGRSEYARKKGLDKKAGYITSADDSKLEELMDILRFFEKWRCNLEEKTTVGDVTWKKHFITEYSWTDIRVSILGFVSMCRYLFEDDSRFKVSRPRDTPRYVNPR 399
            +++ GNFGRSEYAR+ GLDK+AGYI+SADDSKLEEL++++RFF+KWR +L+EKTT+GD TWKKHFITE+SWTDIRV ILGFVSMCRYLFE+DSRFKVS  R  P ++N R
Sbjct:  546 MWWSGNFGRSEYARRNGLDKEAGYISSADDSKLEELINMVRFFDKWRSSLQEKTTMGDETWKKHFITEFSWTDIRVCILGFVSMCRYLFEEDSRFKVSPRRPWPHFINQR 655
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BLAST of mRNA_P-littoralis_Contig140.1.1 vs. uniprot
Match: A0A6H5JTX6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTX6_9PHAE)

HSP 1 Score: 152 bits (384), Expect = 1.060e-43
Identity = 73/106 (68.87%), Postives = 84/106 (79.25%), Query Frame = 1 
Query:   82 GNFGRSEYARKKGLDKKAGYITSADDSKLEELMDILRFFEKWRCNLEEKTTVGDVTWKKHFITEYSWTDIRVSILGFVSMCRYLFEDDSRFKVSRPRDTPRYVNPR 399
            GNFGRS+YARK GLDK  GY  SADDSKLE LMDILRFF++WR +LE + T+GD  WK HFIT++SWTDIRV ILG VSMCRYLFE DSRFK+    D P ++N R
Sbjct:   37 GNFGRSDYARKNGLDKMVGYTGSADDSKLEGLMDILRFFDEWRASLEARPTLGD--WKAHFITDHSWTDIRVCILGTVSMCRYLFEKDSRFKIYPLSDVPHFINLR 140
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BLAST of mRNA_P-littoralis_Contig140.1.1 vs. uniprot
Match: A0A6H5JRH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRH8_9PHAE)

HSP 1 Score: 149 bits (375), Expect = 5.920e-39
Identity = 68/106 (64.15%), Postives = 83/106 (78.30%), Query Frame = 1 
Query:   85 NFGRSEYARKKGLDKKAGYITSADDSKLEELMDILRFFEKWRCNLEEKTTVGDVTWKKHFITEYSWTDIRVSILGFVSMCRYLFEDDSRFKVSRPRDTPRYVNPRH 402
            NFGRS+YARK GLDK   YI SADDSKLEE+MDIL  F++WR +LE + T+GD  WK HFIT++SWTDIRV ILG VSMCRY+FE+DS FK+    D P ++N R+
Sbjct:  428 NFGRSDYARKNGLDKMVSYIRSADDSKLEEVMDILLLFDEWRASLEARPTLGDGAWKAHFITDHSWTDIRVCILGTVSMCRYVFEEDSTFKIPPLSDVPHFINLRY 533
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BLAST of mRNA_P-littoralis_Contig140.1.1 vs. uniprot
Match: A0A6H5KH17_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH17_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 1.930e-32
Identity = 56/78 (71.79%), Postives = 65/78 (83.33%), Query Frame = 1 
Query:   82 GNFGRSEYARKKGLDKKAGYITSADDSKLEELMDILRFFEKWRCNLEEKTTVGDVTWKKHFITEYSWTDIRVSILGFV 315
            GNFGRS+YARK GLDK  GYI SADDSKLEELMDILRFF++WR +LE + T+G   WK +FIT++SWTDIRV ILG V
Sbjct:   24 GNFGRSDYARKNGLDKMVGYIRSADDSKLEELMDILRFFDEWRASLEARPTLGGRAWKAYFITDHSWTDIRVCILGTV 101
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BLAST of mRNA_P-littoralis_Contig140.1.1 vs. uniprot
Match: A0A6H5JZW9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZW9_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 3.490e-29
Identity = 51/76 (67.11%), Postives = 60/76 (78.95%), Query Frame = 1 
Query:  136 GYITSADDSKLEELMDILRFFEKWRCNLEEKTTVGDVTWKKHFITEYSWTDIRVSILGFVSMCRYLFEDDSRFKVS 363
            GYI S DDSKL+ELMDIL FF++WR +LE + T+GD  WK HFIT++ WTD RV ILG V MCRYL E DSRFK+S
Sbjct:    3 GYIRSTDDSKLDELMDILWFFDEWRASLEARPTLGDGAWKAHFITDHLWTDSRVCILGTVRMCRYLIEKDSRFKIS 78
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BLAST of mRNA_P-littoralis_Contig140.1.1 vs. uniprot
Match: A0A6H5K5I6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5I6_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 8.710e-27
Identity = 58/120 (48.33%), Postives = 80/120 (66.67%), Query Frame = 1 
Query:   67 VLFFHGNFGRSEYARKKGLDKKAGYITSADDSKLEELMDILRFFEKWRCNLEEK---TTVGD-VTWKKHFITEYSWTDIRVSILGFVSMCRYLFEDDSRFKV-SRPRDTPRYVNPRHHCQ 411
            V  F+GN+GRS+  RK G  K  G I S + + ++ L++IL FF+ W+  LE K   +  GD + WKKHFIT  SW D+R+SILGFVSMCRYLFED  RF++ S   +  R+++PR+  Q
Sbjct:   60 VDIFNGNYGRSKVDRKDGSKKMVGCIRSFESAPMDRLLEILEFFDDWQSTLERKHIPSGEGDKLGWKKHFITHQSWFDLRLSILGFVSMCRYLFEDPERFQIDSLSPNCRRFLSPRNCSQ 179
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BLAST of mRNA_P-littoralis_Contig140.1.1 vs. uniprot
Match: A0A6H5K7Z3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Z3_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 1.940e-21
Identity = 45/89 (50.56%), Postives = 63/89 (70.79%), Query Frame = 1 
Query:   79 HGNFGRSEYARKKGLDKKAGYITSADDSKLEELMDILRFFEKWRCNLEEKTTVGDVTWKKHFITEYSWTDIRVSILGFVSMCRYLFEDD 345
            +G +G +E  RK+G +K+ GYIT AD   L  L++IL FF+ W+ +LE     G   W  HFIT+YSWTD+R +ILGFV+MCRY+F+D+
Sbjct:  473 NGVYGLNEVERKQGGNKRKGYITGADSPLLGRLLEILEFFDSWQVSLEAH--FGPKEWANHFITDYSWTDMRTTILGFVAMCRYVFKDE 559
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BLAST of mRNA_P-littoralis_Contig140.1.1 vs. uniprot
Match: A0A6H5JNK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNK0_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 7.800e-20
Identity = 41/61 (67.21%), Postives = 51/61 (83.61%), Query Frame = 1 
Query:  136 GYITSADDSKLEELMDILRFFEKWRCNLEEKTTVGDVTWKKHFITEYSWTDIRVSILGFVS 318
            GYI SAD SKLE LMDILRFF++WR +LE + T+GD TW+ HFIT++SWTDI+V ILG V+
Sbjct:    3 GYIRSADRSKLE-LMDILRFFDEWRASLEARPTLGDGTWEAHFITDHSWTDIQVCILGTVA 62
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BLAST of mRNA_P-littoralis_Contig140.1.1 vs. uniprot
Match: A0A6H5K095_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K095_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 7.080e-16
Identity = 34/49 (69.39%), Postives = 41/49 (83.67%), Query Frame = 1 
Query:  133 AGYITSADDSKLEELMDILRFFEKWRCNLEEKTTVGDVTWKKHFITEYS 279
            AGYI SADDSKLEELMDILRF  +WR +LE ++T+GD  WK HFIT++S
Sbjct:    2 AGYIRSADDSKLEELMDILRFLGEWRASLEARSTLGDCAWKAHFITDHS 50
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BLAST of mRNA_P-littoralis_Contig140.1.1 vs. uniprot
Match: A0A6H5K071_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K071_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 1.670e-6
Identity = 30/86 (34.88%), Postives = 48/86 (55.81%), Query Frame = 1 
Query:   88 FGRSEYARKKGLDKKAGYITSADDSKLEELMDILRFFEKWRCNLEEKTTVGDVTWKKHFITEYSWTDIRVSILGFVSMCRYLFEDD 345
            + R      K +D +   ITS D   L+ L++IL +F+ W  +L       D+     F+ + +W D+R++ILGFV+M RY+F DD
Sbjct:  493 YNRDPIDVSKRIDIRKSCITSKDSPLLDRLLEILEWFDTWWQDLN-LFGGSDLALDDLFLPDQTWDDLRLTILGFVAMTRYVFGDD 577
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig140.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5JR14_9PHAE1.130e-4973.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTX6_9PHAE1.060e-4368.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRH8_9PHAE5.920e-3964.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KH17_9PHAE1.930e-3271.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZW9_9PHAE3.490e-2967.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5I6_9PHAE8.710e-2748.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7Z3_9PHAE1.940e-2150.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JNK0_9PHAE7.800e-2067.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K095_9PHAE7.080e-1669.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K071_9PHAE1.670e-634.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig140contigP-littoralis_Contig140:1839..5338 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size413
Hectar predicted targeting categoryother localisation
Exons2
Cds size411
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789653.5450308-CDS-P-littoralis_Contig140:1839..21681680789653.5450308-CDS-P-littoralis_Contig140:1839..2168Pylaiella littoralis U1_48CDSP-littoralis_Contig140 1840..2168 -
1680789653.5577643-CDS-P-littoralis_Contig140:5256..53381680789653.5577643-CDS-P-littoralis_Contig140:5256..5338Pylaiella littoralis U1_48CDSP-littoralis_Contig140 5257..5338 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig140.1.1prot_P-littoralis_Contig140.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig140 1840..5338 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig140.1.1

>prot_P-littoralis_Contig140.1.1 ID=prot_P-littoralis_Contig140.1.1|Name=mRNA_P-littoralis_Contig140.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=137bp
PTSDLPAVRATISTSETLCQGRVLFFHGNFGRSEYARKKGLDKKAGYITS
ADDSKLEELMDILRFFEKWRCNLEEKTTVGDVTWKKHFITEYSWTDIRVS
ILGFVSMCRYLFEDDSRFKVSRPRDTPRYVNPRHHCQ
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mRNA from alignment at P-littoralis_Contig140:1839..5338-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig140.1.1 ID=mRNA_P-littoralis_Contig140.1.1|Name=mRNA_P-littoralis_Contig140.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3500bp|location=Sequence derived from alignment at P-littoralis_Contig140:1839..5338- (Pylaiella littoralis U1_48)
CCAACTTCTGATCTACCTGCTGTACGCGCTACCATCAGTACGAGTGAGAC
TCTGTGCCAGGGCAGAGTTTTGTTTTTTCACGGTGAGTCTTGTTGTCATG
ACCGTCCTCAGGGCAGCACCCCGGGGTAGTTCCCTACCGAATTCCGACTA
CCCTCGACGTCGCAGGCACTAGCGTCTCGCCCACCAAGGAGGTTAGTCTC
ATACACCCGGTGCCGTCAGTACATGTCTCAGGCTCTCTTGGATAGAAGTC
CGTTTGGAAATCGGACTTGTGTAGGCAGACTTCTCTCCAAAATGCGGACA
AGAATCTCACCGTGTCGAGAGGACCCTGAGCGTTCGCCAGAAGCAGGTTG
AAAAACAATGCAGGAAAAATGGAAAAATTATTTTTGAAAAATCAACACAC
AGCCCATGGCGTGCAATCACCACCGCGCAGTACGCCAGAGCACGCCTCGT
GCCTGCGGGTGAACAGAAAATGCTGTGGGTTACCAGAATGCCGTCGGCTT
CAGCTTTGGTGCTGTGTTGTGTATCGGTGACGAGTCACTTTGTAGCAGGG
AATTGTTGGCTAGGTAATCTGTAATCTGTAATCTGCCATCGCTTCTGCGC
CAGAGACAAAACACCATACAGACTTGAACAGACAGATCCTTCGAGATTAT
CTCTTCCCACACAAAGCCGTTATCGTCCGTTCACACGCGGGTGTGCTTGC
CCACCATAGATTTATAGCGTACCTTCGGGACCGCACGCTTCCCAGTGCTG
CGCACCGGTTTAAGGGAGCGCACCTTCCGAACACCGTTCTGGCTGCTGTG
AGGGCCGAAGAAGACACAACATAACAATCTAAAACACCTCAGCTGTAGTG
TGCTGTGTTGGCTGTCGAATGAGCCCTGGTTTGTCGAGTTAGGCGGCCTG
TGGCCCTCAAATGTGACGAAAGAAAAAATCGAAGTCCGGCGGCAAATAGG
CTGCAGTTTTGTGCGGCGCAACCTCTCGCGGGTGCAGAGGCTGCATTTCA
CCCGAGTACGAGAACGCATAGCACACAGCACAGATCCGTACGAAAGTTGG
CACATGGGCTCAACATACAACTAGGGGGTAGTTTGCAAGAAGACGCGCAC
CAATACGCGCTGTGGCGCACCAACGCGGCGCTTTCTTGTTAAAAATGACG
TCCGCGCGAAGGCACCATGCTTAGCTTCCTGCAAACGATTCAGGGAGAGT
GCACCGGTTTGAACAAGAGGACATTCTGAGGGTTGCTACGCACTTCGAAT
TTTGCGGGAACACCCAGTATAGGCTGAGAACGCGCAATCGGCGCGCACCA
GGTTTGAACTTAAATTTTACGTTCCGCCGACGCACACCGGCTCTCTTCAT
CTTACGCGCCAAAAAGAAAAACAGATGTACTTCGTGTGTCGCTAGACTGA
TTAGGTTTTTCCGCGGGCGCGCGAATCCACGGCCCCCCGCGAATCTGCTG
GGCCCCTCCTATTTTTTCGCCGGTGCGCAGCATTCTTCCTCGCAAGCCGT
TTCACCAATGTCAGCTGACTGCGGTTCAGGCTTCCGGGCAATTTCGAATG
GGTGTAGACTAGTCTTACACGTGACAAATTCTTCGTCCTGCCTGAACTCT
TACTCACTGCCGCGAACATCGATTGACTTATGCGCACACACTCTATCATT
CGAAGATAACAATATGCGGACCATGACCATTGCTCCCATTCCCTGTCCTC
CACAGCAGTACTTCCTCAAAGAGGCAGCGTCCCACAAGAGGAAATGACGT
AGAACACCACCCCTCTTGCGCAAATATGAATCTACCGTACTCGATGTTTC
GCGCGCGAGTGGTTTCATACTTTCCACCACTATTAATAGCTGGTACTTTG
CTTGCATGATTTGCACCCTTGTTTTGGCGAGCGTTAAAGGCTGTATTTCA
GCTGTTGTTTTTGTCACATTGAAAACCGTTCCGTTCTCTCTATCCAGTAC
CTCCAACTGTCCGTGCTCTTCCAACACTTGCGTCGGGCGATTCCCGTGGT
CACAAGCTAACTACCCTAAGAAGATGTATTCTGAAATAAAACACAATAAA
AAACGGACCAGGAGAAGGATGAGGGAGGGCCGAGGACACGATCGCACACC
ACGCCCACCACGAGTGATCGTGCATTGGAGAGCGACCGCTGCGCTCCGAG
ACCACGAGTAAGCCTACCTCACCATAGAGTCCGGGGTGGGGGTGGCGGAG
CATCTCTCCACCGTGAAGTAATGTTGTTGAGGAACACACAGAGTTCCTCA
TAGCTTTTTTAATAGGTGTCCCGCGTAGCACTAGCGTCGAGGGTTGATGC
CTTCATCGACATCTTCAACGGCAAGTGATAGGTGTTCGTATTGTCGCAGT
ATGTAGAGGGGCCTGTCGCGTGACTTTGTTCCGTGCTCTCCTTTTTCCCC
TGAAGTTTCCCGGCACCCGGGTACACTCTTTCTCTATACAGGGGTTGTTC
CGAAGTCCGGAAATACCGGCAAACGCCCTGTCTCCCGGCGCAGCTCGTGA
CGGAGATTTTTTTTTTAGCTTGATTGTTGAGTTTTCATGGGCTAAAAACC
CGCCACACTTGTGTTCTAACGGGATTGAACAAATATCGTAATTTGCCAAT
ATAATCGCTTATTATTGTTTTCAAATAAGTCTCTTAAACAGAGATATCGC
ACCAAAACAGCACATCGAAGACCAATATACTGTTTTATTCGAGACAACTA
TTCTTTCGATTTCAAAATAGACTGCGGCAAACTATTCCTCTCATCATTGC
CGCGAACTGTTTGTGGCGTTGTTGGTGGTGGTGCAGGGGGTGGTGTTTGT
GTCGTTTTTGTGTGATAAAATGTGCTGTGTAATGGCTGCAATGGATAGAT
TTCATGACATAGTATGCGGATGCCGGGGTGCGGAGTGCAGGATGGGGGCT
CAGTGGTGAGTTTTGGGGCCCCGTGGAACGATTCTCGCAACAAATGATGC
AATTAGCCAAAAACATAAATAACTCTGCAGCTACGTATCGACATATCTCG
ACGAGGCGATCACTAATATTGTTTCACGTCCCAACGCGATTGAACAAAAA
GGAGAGCACGGACCTACTTGTTTTTTTTTTTATATATTTCCTCGCGCAAT
GTACACACTCTGTGCGCGTCGTTTGTCTCTTCCCACACGGCCCCATGTAC
GTGTACGTGTATATATTCAGGAAACTTCGGCCGCTCGGAGTACGCGCGCA
AGAAAGGCCTCGACAAGAAAGCGGGCTACATTACATCGGCCGACGACTCC
AAACTAGAAGAACTCATGGACATCTTGCGTTTTTTCGAGAAGTGGCGGTG
CAATCTGGAGGAGAAGACGACGGTGGGCGACGTCACCTGGAAGAAGCACT
TCATCACGGAGTACTCGTGGACCGACATCCGGGTGTCCATCCTTGGCTTC
GTCAGTATGTGCCGATACTTGTTCGAGGATGATTCGAGGTTCAAGGTCTC
CCGCCCGCGCGACACGCCCCGCTACGTCAACCCGCGGCACCATTGCCAGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig140:1839..5338-

>mRNA_P-littoralis_Contig140.1.1 ID=mRNA_P-littoralis_Contig140.1.1|Name=mRNA_P-littoralis_Contig140.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=411bp|location=Sequence derived from alignment at P-littoralis_Contig140:1839..5338- (Pylaiella littoralis U1_48)
CCAACTTCTGATCTACCTGCTGTACGCGCTACCATCAGTACGAGTGAGAC
TCTGTGCCAGGGCAGAGTTTTGTTTTTTCACGGAAACTTCGGCCGCTCGG
AGTACGCGCGCAAGAAAGGCCTCGACAAGAAAGCGGGCTACATTACATCG
GCCGACGACTCCAAACTAGAAGAACTCATGGACATCTTGCGTTTTTTCGA
GAAGTGGCGGTGCAATCTGGAGGAGAAGACGACGGTGGGCGACGTCACCT
GGAAGAAGCACTTCATCACGGAGTACTCGTGGACCGACATCCGGGTGTCC
ATCCTTGGCTTCGTCAGTATGTGCCGATACTTGTTCGAGGATGATTCGAG
GTTCAAGGTCTCCCGCCCGCGCGACACGCCCCGCTACGTCAACCCGCGGC
ACCATTGCCAG
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