mRNA_P-littoralis_Contig140.103.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig140.103.1
Unique NamemRNA_P-littoralis_Contig140.103.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig140.103.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig140contigP-littoralis_Contig140:470610..471737 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1130
Hectar predicted targeting categoryother localisation
Exons1
Cds size1128
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789653.507103-CDS-P-littoralis_Contig140:470609..4717371680789653.507103-CDS-P-littoralis_Contig140:470609..471737Pylaiella littoralis U1_48CDSP-littoralis_Contig140 470610..471737 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig140.103.1prot_P-littoralis_Contig140.103.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig140 470610..471737 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig140.103.1

>prot_P-littoralis_Contig140.103.1 ID=prot_P-littoralis_Contig140.103.1|Name=mRNA_P-littoralis_Contig140.103.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=376bp
MRGRRFGDAAVPIKIWSPTGELADGTCGSGHNSGIHVSPTSPWKQQGGRC
VGSSELFMCSPGDVIPRDVQQLYPLGAMYTFVDSRHDRKRIFALEWDRVT
LQDELLRQYPVWMRDASASFEWEGAWALDYKGDWRQMRGYYGTNIRTLLS
PNEQEIFFQRIESENEDRPRAQPESCAVSQEDVAAMPTADEPDLTQESCV
SCAVVPELTAGDGAQFAVESPTAEVQRSTAVVVESQLREPVSQQLFVPVQ
QDSSSEDCSEAGIDNSINGSSDDRSEDRSEDRSDECSGDSNGDRSEGSGE
GSSSNGSSYEGSDVTWRGAPTHPFDPGQSPSRSSSSSSDDGGGYSSDTGM
DAACRGEPTSPFDRNVEKGELVLGVA
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mRNA from alignment at P-littoralis_Contig140:470610..471737+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig140.103.1 ID=mRNA_P-littoralis_Contig140.103.1|Name=mRNA_P-littoralis_Contig140.103.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1128bp|location=Sequence derived from alignment at P-littoralis_Contig140:470610..471737+ (Pylaiella littoralis U1_48)
ATGCGAGGACGAAGATTTGGCGACGCAGCGGTGCCGATAAAGATCTGGAG
TCCGACGGGAGAACTAGCGGATGGGACATGCGGCAGCGGTCACAACTCTG
GCATTCATGTGAGTCCCACGTCACCGTGGAAGCAGCAAGGTGGGAGGTGT
GTTGGGTCATCTGAGCTCTTCATGTGTTCACCGGGTGACGTCATTCCACG
TGATGTGCAGCAACTTTATCCGTTGGGAGCAATGTACACGTTTGTCGACA
GCCGTCACGATCGCAAACGTATATTTGCTTTGGAGTGGGATCGAGTAACA
CTCCAAGACGAGTTGCTTCGCCAATACCCTGTTTGGATGAGAGATGCTTC
TGCTTCATTCGAATGGGAAGGTGCATGGGCACTTGACTACAAGGGCGACT
GGCGCCAGATGCGCGGGTATTATGGTACGAATATCCGAACGCTTTTGTCT
CCTAACGAGCAAGAGATTTTTTTTCAGAGGATAGAGTCGGAGAACGAAGA
CCGACCGCGTGCACAGCCGGAATCGTGCGCAGTGAGTCAAGAGGATGTAG
CAGCGATGCCCACAGCGGACGAACCTGACCTGACTCAGGAAAGTTGTGTT
TCGTGTGCGGTGGTCCCGGAGCTCACGGCCGGGGACGGAGCACAATTCGC
GGTGGAATCGCCGACGGCGGAAGTGCAACGATCAACGGCAGTGGTAGTGG
AGTCGCAGTTAAGGGAACCGGTTTCCCAGCAGTTATTTGTGCCGGTTCAA
CAAGACAGCAGCAGTGAAGATTGCAGCGAAGCCGGCATTGACAACAGCAT
CAACGGTAGCAGCGACGACCGCAGCGAAGACAGGAGCGAAGACAGAAGTG
ACGAGTGCAGCGGAGACAGCAATGGAGACCGCAGCGAAGGTAGCGGCGAA
GGCAGCAGCAGCAACGGCAGCAGCTATGAGGGATCGGATGTTACCTGGAG
GGGAGCGCCGACGCACCCTTTCGACCCCGGGCAGAGTCCTTCGCGCAGCA
GCAGCAGCAGCAGCGATGACGGCGGTGGTTACAGCAGCGATACGGGGATG
GATGCTGCTTGCCGGGGAGAGCCGACAAGCCCTTTCGACCGCAACGTCGA
GAAAGGGGAGTTGGTGCTGGGCGTGGCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig140:470610..471737+

>mRNA_P-littoralis_Contig140.103.1 ID=mRNA_P-littoralis_Contig140.103.1|Name=mRNA_P-littoralis_Contig140.103.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1128bp|location=Sequence derived from alignment at P-littoralis_Contig140:470610..471737+ (Pylaiella littoralis U1_48)
ATGCGAGGACGAAGATTTGGCGACGCAGCGGTGCCGATAAAGATCTGGAG
TCCGACGGGAGAACTAGCGGATGGGACATGCGGCAGCGGTCACAACTCTG
GCATTCATGTGAGTCCCACGTCACCGTGGAAGCAGCAAGGTGGGAGGTGT
GTTGGGTCATCTGAGCTCTTCATGTGTTCACCGGGTGACGTCATTCCACG
TGATGTGCAGCAACTTTATCCGTTGGGAGCAATGTACACGTTTGTCGACA
GCCGTCACGATCGCAAACGTATATTTGCTTTGGAGTGGGATCGAGTAACA
CTCCAAGACGAGTTGCTTCGCCAATACCCTGTTTGGATGAGAGATGCTTC
TGCTTCATTCGAATGGGAAGGTGCATGGGCACTTGACTACAAGGGCGACT
GGCGCCAGATGCGCGGGTATTATGGTACGAATATCCGAACGCTTTTGTCT
CCTAACGAGCAAGAGATTTTTTTTCAGAGGATAGAGTCGGAGAACGAAGA
CCGACCGCGTGCACAGCCGGAATCGTGCGCAGTGAGTCAAGAGGATGTAG
CAGCGATGCCCACAGCGGACGAACCTGACCTGACTCAGGAAAGTTGTGTT
TCGTGTGCGGTGGTCCCGGAGCTCACGGCCGGGGACGGAGCACAATTCGC
GGTGGAATCGCCGACGGCGGAAGTGCAACGATCAACGGCAGTGGTAGTGG
AGTCGCAGTTAAGGGAACCGGTTTCCCAGCAGTTATTTGTGCCGGTTCAA
CAAGACAGCAGCAGTGAAGATTGCAGCGAAGCCGGCATTGACAACAGCAT
CAACGGTAGCAGCGACGACCGCAGCGAAGACAGGAGCGAAGACAGAAGTG
ACGAGTGCAGCGGAGACAGCAATGGAGACCGCAGCGAAGGTAGCGGCGAA
GGCAGCAGCAGCAACGGCAGCAGCTATGAGGGATCGGATGTTACCTGGAG
GGGAGCGCCGACGCACCCTTTCGACCCCGGGCAGAGTCCTTCGCGCAGCA
GCAGCAGCAGCAGCGATGACGGCGGTGGTTACAGCAGCGATACGGGGATG
GATGCTGCTTGCCGGGGAGAGCCGACAAGCCCTTTCGACCGCAACGTCGA
GAAAGGGGAGTTGGTGCTGGGCGTGGCC
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