mRNA_P-littoralis_Contig140.82.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig140.82.1
Unique NamemRNA_P-littoralis_Contig140.82.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig140.82.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig140contigP-littoralis_Contig140:403443..403845 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size404
Hectar predicted targeting categoryother localisation
Exons1
Cds size315
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789653.4200575-CDS-P-littoralis_Contig140:403442..4037571680789653.4200575-CDS-P-littoralis_Contig140:403442..403757Pylaiella littoralis U1_48CDSP-littoralis_Contig140 403443..403757 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789653.4319115-UTR-P-littoralis_Contig140:403757..4038451680789653.4319115-UTR-P-littoralis_Contig140:403757..403845Pylaiella littoralis U1_48UTRP-littoralis_Contig140 403758..403845 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig140.82.1prot_P-littoralis_Contig140.82.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig140 403443..403757 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig140.82.1

>prot_P-littoralis_Contig140.82.1 ID=prot_P-littoralis_Contig140.82.1|Name=mRNA_P-littoralis_Contig140.82.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=105bp
GSSPFCTWGGFGSRHGQAAALYPLKKNWGKLAGVGGVRGGGVGPRRFGLR
GCRKAFSQDVYLRSDRRSTVFLISSLSAAFPPPLSCTPRMGRWRGGGHSH
APLW*
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mRNA from alignment at P-littoralis_Contig140:403443..403845+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig140.82.1 ID=mRNA_P-littoralis_Contig140.82.1|Name=mRNA_P-littoralis_Contig140.82.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=403bp|location=Sequence derived from alignment at P-littoralis_Contig140:403443..403845+ (Pylaiella littoralis U1_48)
GGGAGCTCGCCATTCTGCACTTGGGGGGGGTTCGGCTCGCGCCACGGTCA
AGCTGCCGCCCTCTACCCTCTTAAAAAAAATTGGGGAAAGCTCGCGGGTG
TCGGCGGTGTTCGTGGGGGAGGAGTTGGCCCGCGGCGTTTCGGCTTGCGG
GGGTGCCGCAAGGCGTTTTCGCAGGACGTTTATTTAAGGAGTGACCGGCG
CTCTACTGTGTTTTTAATCTCATCTCTCTCCGCAGCTTTTCCCCCTCCCC
TTTCATGTACCCCGCGGATGGGAAGGTGGAGGGGGGGTGGGCACTCCCAT
GCGCCCTTGTGGTAAAGGGAGAAAGGTGCGTCCTTGAACAGGATAGGGTT
GGGTTTTAGCACGAGTGGGCACGTATAAAATTGGCCGAAACTTTACTTTT
CTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig140:403443..403845+

>mRNA_P-littoralis_Contig140.82.1 ID=mRNA_P-littoralis_Contig140.82.1|Name=mRNA_P-littoralis_Contig140.82.1|organism=Pylaiella littoralis U1_48|type=CDS|length=315bp|location=Sequence derived from alignment at P-littoralis_Contig140:403443..403845+ (Pylaiella littoralis U1_48)
GGGAGCTCGCCATTCTGCACTTGGGGGGGGTTCGGCTCGCGCCACGGTCA
AGCTGCCGCCCTCTACCCTCTTAAAAAAAATTGGGGAAAGCTCGCGGGTG
TCGGCGGTGTTCGTGGGGGAGGAGTTGGCCCGCGGCGTTTCGGCTTGCGG
GGGTGCCGCAAGGCGTTTTCGCAGGACGTTTATTTAAGGAGTGACCGGCG
CTCTACTGTGTTTTTAATCTCATCTCTCTCCGCAGCTTTTCCCCCTCCCC
TTTCATGTACCCCGCGGATGGGAAGGTGGAGGGGGGGTGGGCACTCCCAT
GCGCCCTTGTGGTAA
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