mRNA_P-littoralis_Contig140.96.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig140.96.1
Unique NamemRNA_P-littoralis_Contig140.96.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig140.96.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig140contigP-littoralis_Contig140:443583..444331 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size163
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size162
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789653.2549322-CDS-P-littoralis_Contig140:443583..4436611680789653.2549322-CDS-P-littoralis_Contig140:443583..443661Pylaiella littoralis U1_48CDSP-littoralis_Contig140 443584..443661 -
1680789653.2671876-CDS-P-littoralis_Contig140:444247..4443311680789653.2671876-CDS-P-littoralis_Contig140:444247..444331Pylaiella littoralis U1_48CDSP-littoralis_Contig140 444248..444331 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig140.96.1prot_P-littoralis_Contig140.96.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig140 443584..444331 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig140.96.1

>prot_P-littoralis_Contig140.96.1 ID=prot_P-littoralis_Contig140.96.1|Name=mRNA_P-littoralis_Contig140.96.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=54bp
SGELHECRGCSLAKGLRKPIARSTHTRAPLPHIIEEGEPAEGEGEKRGGA
SSQG
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mRNA from alignment at P-littoralis_Contig140:443583..444331-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig140.96.1 ID=mRNA_P-littoralis_Contig140.96.1|Name=mRNA_P-littoralis_Contig140.96.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=749bp|location=Sequence derived from alignment at P-littoralis_Contig140:443583..444331- (Pylaiella littoralis U1_48)
AGCGGGGAGCTCCACGAGTGCCGGGGTTGTTCACTGGCCAAAGGGCTACG
GAAGCCCATCGCGAGGTCGACTCACACCAGAGCAGTTAAGAAGCTTCAAA
GGGTTTTTGTTGATCTCAGCGGAAGAATGGCCACAGAGAGTATCGGGGGG
AAGCGGTATACACTCATCGTACGGGACGATTGCACGCGGTTCACGCGAGT
GTATTTCCTAAGACGAAAATCGGACGCGACCAGCGCGTTCGAATCTTACC
TAGCGGAGGTGCGGGCAGATGGCACACCTTCCGCAGTCATGGCTGTCAGG
TCAGACAACGGTGGCGAGTTTTTCGAAGGGAGTTTCGGTGAACTTTGTCG
CAAGCGTGGTATCAAACAAGAGTTCACACCTGCCGACAGCCCGAAGTACG
ACGGAGTAGCCGAACGCGGGTTGGCCCTGATCAATGACGCTGCCGTAGCC
GCCCGCATTCAAGCCACTGAGATGTTTCCAGACGCGCCCGATTCCCATCA
TTGTGGGCCGATTTCCATGCTCTATCATGGAGACAAGTCACCGTACGAGC
TGTGGTACCGGAGGGGTGTGGCCCTTCCTCAAGCCGGCTTTCAAGTCACA
GGGCTCAGGCCACTGCAATCACCTGACTCACTTGGCGACACGTGCCCCCT
GCCCCCTCGCACCCCCGCAGCCACTGCCCCATATCATCGAAGAGGGGGAG
CCCGCAGAGGGGGAGGGTGAAAAGCGGGGAGGCGCGTCAAGTCAAGGCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig140:443583..444331-

>mRNA_P-littoralis_Contig140.96.1 ID=mRNA_P-littoralis_Contig140.96.1|Name=mRNA_P-littoralis_Contig140.96.1|organism=Pylaiella littoralis U1_48|type=CDS|length=162bp|location=Sequence derived from alignment at P-littoralis_Contig140:443583..444331- (Pylaiella littoralis U1_48)
AGCGGGGAGCTCCACGAGTGCCGGGGTTGTTCACTGGCCAAAGGGCTACG
GAAGCCCATCGCGAGGTCGACTCACACCAGAGCACCACTGCCCCATATCA
TCGAAGAGGGGGAGCCCGCAGAGGGGGAGGGTGAAAAGCGGGGAGGCGCG
TCAAGTCAAGGC
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