mRNA_P-littoralis_Contig14.267.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig14.267.1
Unique NamemRNA_P-littoralis_Contig14.267.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig14.267.1 vs. uniprot
Match: A0A6H5JVZ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVZ9_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 2.350e-11
Identity = 33/52 (63.46%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:   25 STVGTAPTLPAFSGHLCSPAIGENDVRRAALEVLVLAYAKKKEESIAAGLLP 180
            ST G AP  PAFS HLC P +G+ND+R AAL+ LVL YA+ KEE IA+GL P
Sbjct:  305 STTGKAPEFPAFSRHLCEPEVGQNDLRPAALDDLVLTYARAKEEFIASGLQP 356
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BLAST of mRNA_P-littoralis_Contig14.267.1 vs. uniprot
Match: A0A6H5K1E3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1E3_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 1.550e-10
Identity = 32/52 (61.54%), Postives = 38/52 (73.08%), Query Frame = 1 
Query:   25 STVGTAPTLPAFSGHLCSPAIGENDVRRAALEVLVLAYAKKKEESIAAGLLP 180
            ST G AP  PAFS HLC P +G+ND+R AAL+ LVL YA+ KEE IA+G  P
Sbjct:  642 STTGKAPRFPAFSRHLCEPEVGQNDLRPAALDDLVLTYARAKEEFIASGRQP 693
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BLAST of mRNA_P-littoralis_Contig14.267.1 vs. uniprot
Match: D7G349_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G349_ECTSI)

HSP 1 Score: 63.9 bits (154), Expect = 2.080e-10
Identity = 33/52 (63.46%), Postives = 38/52 (73.08%), Query Frame = 1 
Query:   25 STVGTAPTLPAFSGHLCSPAIGENDVRRAALEVLVLAYAKKKEESIAAGLLP 180
            ST   AP LPAFS HLC P  G+ND+R AAL+ LVLAYA+ KE+ IA GL P
Sbjct:  214 STTAKAPELPAFSQHLCEPVAGQNDLRPAALDHLVLAYARAKEKFIAIGLQP 265
[Close]
BLAST of mRNA_P-littoralis_Contig14.267.1 vs. uniprot
Match: A0A6H5KWH1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWH1_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 1.960e-7
Identity = 26/40 (65.00%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:   25 STVGTAPTLPAFSGHLCSPAIGENDVRRAALEVLVLAYAK 144
            ST G AP LPAFS HLC P +G+ND+R AAL+ LVL YA+
Sbjct:  159 STTGKAPELPAFSRHLCKPEVGQNDLRSAALDDLVLIYAR 198
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig14.267.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JVZ9_9PHAE2.350e-1163.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1E3_9PHAE1.550e-1061.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G349_ECTSI2.080e-1063.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KWH1_9PHAE1.960e-765.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig14contigP-littoralis_Contig14:1068422..1069271 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size184
Hectar predicted targeting categoryother localisation
Exons2
Cds size183
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789653.1562107-CDS-P-littoralis_Contig14:1068422..10684611680789653.1562107-CDS-P-littoralis_Contig14:1068422..1068461Pylaiella littoralis U1_48CDSP-littoralis_Contig14 1068423..1068461 -
1680789653.1672127-CDS-P-littoralis_Contig14:1069127..10692711680789653.1672127-CDS-P-littoralis_Contig14:1069127..1069271Pylaiella littoralis U1_48CDSP-littoralis_Contig14 1069128..1069271 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig14.267.1prot_P-littoralis_Contig14.267.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig14 1068423..1069271 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig14.267.1

>prot_P-littoralis_Contig14.267.1 ID=prot_P-littoralis_Contig14.267.1|Name=mRNA_P-littoralis_Contig14.267.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=61bp
AGARGGDRSTVGTAPTLPAFSGHLCSPAIGENDVRRAALEVLVLAYAKKK
EESIAAGLLPV
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mRNA from alignment at P-littoralis_Contig14:1068422..1069271-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig14.267.1 ID=mRNA_P-littoralis_Contig14.267.1|Name=mRNA_P-littoralis_Contig14.267.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=850bp|location=Sequence derived from alignment at P-littoralis_Contig14:1068422..1069271- (Pylaiella littoralis U1_48)
GCGGGTGCTCGCGGTGGCGACCGGTCCACTGTGGGCACTGCTCCCACACT
TCCTGCCTTCTCTGGACACCTTTGTTCACCCGCCATCGGGGAAAATGATG
TCCGACGTGCGGCTCTGGAAGTTCTGGTTTTGGCCTACGCCAAGGTGGGT
GGGGCGTTGCTTCTCTCGTTTTGTATTTTTCATTCGAGATTTGTTATGTT
TTCTGGTGTCATTGCTTGTTGCGGGTGTTGTTGTGTTTTGTTTCCTTCAT
TATGTCTCCGTCGTCAGTTTATCTTATCTCTTCTGCCTTTCTGTTTGTGT
TCTCCGTACTTGAGGGTCTTGTCCCCGTCGTAGCCAGTTCACCTTCTTTC
GTCCGAACCCTGTCCTCGGTTTTATTATGCAGACCAAAATGTGACATCTG
CTTTATTGACGTGGGAGCATATTTCCCAAAGAGTTCGCAAGAGGTTTCAC
ACACGGGGGGGTAGGGTGGGTCCAAGTCGAGCATTCTTCCGAAGTAGCAT
CGGTAAAATCTTCCCGCGAGGTTTAGGTCCGACTTGTTTAAGTCTCCTAC
CATTTGATGCAACTCGATGACAAGCGTTTCAAAATACATTTTGACCCCCC
CCCCGGGATAGAACAACAGATGACTTCGTTTGTTAACTTGTTTTTGGGAA
ACCGTACCCCCTCAATACCCCCCCTCTCGGTACAGCGCCCCCGGTGTGCC
GTTCTACTTTCTCTTGCCGTCTTGCGACAACACACTTCTTCTGGTCCATT
GGCTCTTTGGCGCTCCTAATCTTCTACATCCCTGACCCGTTGCCCCTCGC
TCGCTCACAGAAAAAGGAGGAATCCATTGCTGCAGGCCTTCTACCGGTCA
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Coding sequence (CDS) from alignment at P-littoralis_Contig14:1068422..1069271-

>mRNA_P-littoralis_Contig14.267.1 ID=mRNA_P-littoralis_Contig14.267.1|Name=mRNA_P-littoralis_Contig14.267.1|organism=Pylaiella littoralis U1_48|type=CDS|length=183bp|location=Sequence derived from alignment at P-littoralis_Contig14:1068422..1069271- (Pylaiella littoralis U1_48)
GCGGGTGCTCGCGGTGGCGACCGGTCCACTGTGGGCACTGCTCCCACACT
TCCTGCCTTCTCTGGACACCTTTGTTCACCCGCCATCGGGGAAAATGATG
TCCGACGTGCGGCTCTGGAAGTTCTGGTTTTGGCCTACGCCAAGAAAAAG
GAGGAATCCATTGCTGCAGGCCTTCTACCGGTC
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