mRNA_P-littoralis_Contig14.157.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig14.157.1
Unique NamemRNA_P-littoralis_Contig14.157.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig14.157.1 vs. uniprot
Match: A0A6H5KTR5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTR5_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 7.300e-32
Identity = 75/156 (48.08%), Postives = 95/156 (60.90%), Query Frame = 1 
Query:   40 CSACRRADDGTGLRKPRPRTAERIHQFGGESDVLVLFPKRLMASDDPLL--LCKRTGCLLKLFEQRE---NRERA--KHAGGPRKRRSSTQVPEPVAHLQRRPFDRYCTSPSAVDALVAEVSIEGVVLDMCGGRMDAVALRLGLSCTVVTNDVRNR 486
            CSAC   + G   R+ R RT E +  F  E+ +   FP     +  P L  LCKR+GCLL+L+++ E   +RER   K    PR  R+ +  PEPV H +RR FDRYCTSP AVDAL   V+I G VLDMCGG  DAVA+  G +C V+TNDV +R
Sbjct:   32 CSAC--LECGEDFRQTRARTGELLRSFVDEAGLADRFPGFQSGAAGPNLFALCKRSGCLLELYKKHEWARSRERVARKAKQTPRHSRTWSAAPEPVTHHKRRRFDRYCTSPEAVDALRDAVAITGCVLDMCGGPDDAVAMGFGGTCEVLTNDVSSR 185
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BLAST of mRNA_P-littoralis_Contig14.157.1 vs. uniprot
Match: A0A6H5KD02_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD02_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 3.980e-27
Identity = 67/141 (47.52%), Postives = 84/141 (59.57%), Query Frame = 1 
Query:   88 RPRTAERIHQFGGESDVLVLFPKRLMASD---DPLLLCKRTGCLLKLFEQRENRERAKHAGGPRKRRSS-----TQVPEPVAHLQRRPFDRYCTSPSAVDALVAEVSIEGVVLDMCGGRMDAVALRLGLSCTVVTNDVRNR 486
            R RT   +  F   + V   FP  L   D   D L+LCKR GCLL+LF   + +E    +  P KRR+      T  PEPV  L+RR FDRYCTSP+A++AL+ +VSI G VLD CGG  DA+  RL  +C V+TNDVR R
Sbjct:    2 RERTGGNVRSFVEAAGVADKFPA-LKCGDPDVDKLVLCKRGGCLLELFVLNKQKE----SRAPSKRRAKRGPKWTCAPEPVKQLKRRCFDRYCTSPAALEALLGDVSISGCVLDTCGGAGDAIVTRLRDTCQVLTNDVRPR 137
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BLAST of mRNA_P-littoralis_Contig14.157.1 vs. uniprot
Match: A0A6H5L2F6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2F6_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 1.050e-26
Identity = 68/142 (47.89%), Postives = 86/142 (60.56%), Query Frame = 1 
Query:   88 RPRTAERIHQFGGESDVLVLFPKRLMASDDP----LLLCKRTGCLLKLFEQRENRERAKHAGGPRKRRSS-----TQVPEPVAHLQRRPFDRYCTSPSAVDALVAEVSIEGVVLDMCGGRMDAVALRLGLSCTVVTNDVRNR 486
            R RT   +  F   + +   FP   +   DP    L+LCKR GCLL+LF   + RE    +  P +RR+      T  PEPV  L+RR FDRYCTSP+A++AL+  VSI G VLDMCGG  DAVA+RL  +C V+TNDVR R
Sbjct:    2 RERTGGNVRAFLEAAGMGDKFPG--LKCGDPSIGKLVLCKRAGCLLELFVLNQQRE----SRAPTERRAKRGPKWTCAPEPVKQLKRRCFDRYCTSPAALEALLGVVSISGCVLDMCGGTDDAVAIRLRDTCQVLTNDVRPR 137
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BLAST of mRNA_P-littoralis_Contig14.157.1 vs. uniprot
Match: A0A6H5JSC3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSC3_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 5.500e-18
Identity = 41/64 (64.06%), Postives = 48/64 (75.00%), Query Frame = 1 
Query:  286 TQVPEPVAHLQRRPFDRYCTSPSAVDALVAEVSIEGVVLDMCGGRMDAVALRLGLSCTVVTNDV 477
            T  PEPV  L+RR FDRYCTSP+A++AL+  VSI G VLDMCGG  DAV  RL  +C V+TNDV
Sbjct:   11 TCAPEPVKQLKRRCFDRYCTSPTALEALLGVVSISGCVLDMCGGPGDAVVTRLRDTCQVLTNDV 74
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BLAST of mRNA_P-littoralis_Contig14.157.1 vs. uniprot
Match: A0A6H5KES8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KES8_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 4.240e-14
Identity = 47/101 (46.53%), Postives = 60/101 (59.41%), Query Frame = 1 
Query:   88 RPRTAERIHQFGGESDVLVLFPKRLMASDDPLL--LCKRTGCLLKLFEQRE---NRERA--KHAGGPRKRRSSTQVPEPVAHLQRRPFDRYCTSPSAVDAL 369
            R RT E +  F  E+ +   FP     +  P L  LCKR+GCLL+L+++ E   +RER   K    PR  R+ +  PEPV H +RR FDRYCTSP AVDAL
Sbjct:   23 RARTGELLRSFVDEAGLADRFPGFQSGAAGPNLFALCKRSGCLLELYKKHEWARSRERVARKAKQTPRHSRTWSAAPEPVTHHKRRRFDRYCTSPEAVDAL 123
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig14.157.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KTR5_9PHAE7.300e-3248.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KD02_9PHAE3.980e-2747.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L2F6_9PHAE1.050e-2647.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JSC3_9PHAE5.500e-1864.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KES8_9PHAE4.240e-1446.53Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig14contigP-littoralis_Contig14:661962..662450 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size489
Hectar predicted targeting categoryother localisation
Exons1
Cds size465
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789650.6221695-CDS-P-littoralis_Contig14:661961..6624261680789650.6221695-CDS-P-littoralis_Contig14:661961..662426Pylaiella littoralis U1_48CDSP-littoralis_Contig14 661962..662426 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789650.6330075-UTR-P-littoralis_Contig14:662426..6624501680789650.6330075-UTR-P-littoralis_Contig14:662426..662450Pylaiella littoralis U1_48UTRP-littoralis_Contig14 662427..662450 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig14.157.1prot_P-littoralis_Contig14.157.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig14 661962..662426 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig14.157.1

>prot_P-littoralis_Contig14.157.1 ID=prot_P-littoralis_Contig14.157.1|Name=mRNA_P-littoralis_Contig14.157.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=155bp
MEMEVCSACRRADDGTGLRKPRPRTAERIHQFGGESDVLVLFPKRLMASD
DPLLLCKRTGCLLKLFEQRENRERAKHAGGPRKRRSSTQVPEPVAHLQRR
PFDRYCTSPSAVDALVAEVSIEGVVLDMCGGRMDAVALRLGLSCTVVTND
VRNR*
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mRNA from alignment at P-littoralis_Contig14:661962..662450-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig14.157.1 ID=mRNA_P-littoralis_Contig14.157.1|Name=mRNA_P-littoralis_Contig14.157.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=489bp|location=Sequence derived from alignment at P-littoralis_Contig14:661962..662450- (Pylaiella littoralis U1_48)
GCCGTGTGAGCAACAGCATACGACATGGAGATGGAAGTATGCAGTGCCTG
TCGTCGTGCGGATGATGGGACCGGCTTGAGAAAGCCCAGACCTCGGACGG
CTGAGCGAATCCACCAATTTGGTGGAGAAAGCGATGTTCTGGTCCTGTTT
CCGAAGCGGTTGATGGCAAGCGACGACCCCCTGTTGCTGTGCAAACGTAC
GGGTTGCTTGCTCAAGCTGTTTGAGCAGAGGGAGAACCGCGAGAGGGCAA
AACACGCAGGAGGCCCGCGAAAGAGGAGGAGCTCGACTCAGGTCCCGGAG
CCAGTTGCTCACTTGCAGCGCAGACCTTTTGATCGGTACTGCACGTCGCC
CTCGGCGGTCGACGCTTTGGTTGCCGAGGTTAGCATTGAAGGGGTGGTGC
TGGATATGTGCGGAGGAAGGATGGACGCCGTGGCGCTTCGCCTTGGCCTG
AGCTGTACTGTCGTCACGAACGACGTGAGGAACAGGTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig14:661962..662450-

>mRNA_P-littoralis_Contig14.157.1 ID=mRNA_P-littoralis_Contig14.157.1|Name=mRNA_P-littoralis_Contig14.157.1|organism=Pylaiella littoralis U1_48|type=CDS|length=465bp|location=Sequence derived from alignment at P-littoralis_Contig14:661962..662450- (Pylaiella littoralis U1_48)
ATGGAGATGGAAGTATGCAGTGCCTGTCGTCGTGCGGATGATGGGACCGG
CTTGAGAAAGCCCAGACCTCGGACGGCTGAGCGAATCCACCAATTTGGTG
GAGAAAGCGATGTTCTGGTCCTGTTTCCGAAGCGGTTGATGGCAAGCGAC
GACCCCCTGTTGCTGTGCAAACGTACGGGTTGCTTGCTCAAGCTGTTTGA
GCAGAGGGAGAACCGCGAGAGGGCAAAACACGCAGGAGGCCCGCGAAAGA
GGAGGAGCTCGACTCAGGTCCCGGAGCCAGTTGCTCACTTGCAGCGCAGA
CCTTTTGATCGGTACTGCACGTCGCCCTCGGCGGTCGACGCTTTGGTTGC
CGAGGTTAGCATTGAAGGGGTGGTGCTGGATATGTGCGGAGGAAGGATGG
ACGCCGTGGCGCTTCGCCTTGGCCTGAGCTGTACTGTCGTCACGAACGAC
GTGAGGAACAGGTGA
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