mRNA_P-littoralis_Contig14.94.7 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig14.94.7 vs. uniprot
Match: D8LN68_ECTSI (PB1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN68_ECTSI) HSP 1 Score: 316 bits (809), Expect = 1.060e-94 Identity = 195/328 (59.45%), Postives = 224/328 (68.29%), Query Frame = 2
Query: 131 TRSIKITFQGASRDVEVAADQATLAGLQAAIASAFEADLPPRSGDDEAPKDSDLRFTYKDPDGDSIVFDKDSELSLALRLCPSSLEISAAGKEKVKPANKHDREHRLYKVAARNLREYNGVPSMTPTKLTKTLAFLKLNPRRLVNQGLAPQVLLADVEDENAKSNENTAAATQQHPLGDDDCNEDLAESVAAGVEAMRVEDDDKKEWNDGFVSVEPAQSAAPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAAKGKRPVDRPVHKAFVAGGIKLLPREIWPLLVALGVGPRRLVKLGHVNAEHLRAMAVAHKRVNNKQQ 1114
T SIKI FQG SRDV V TLA LQAAIA AF+A+LP RS EA KD+DL FTYKDPDGD IVFDKDSEL+LA+RLCP SLEISAAGKE KPANK D E RLYK+AARNLREYNGVPSMTP KL KTLAFL+LNP+RLV QGLAP+VLLA ++ E A + A + PLGD NEDLAESVAAG+E M VEDD KKEWNDGFVSVEPA +++P A + K+ + +HKAF+AGGI+L PRE+ PLLVAL V P RL KLG VN + LRAM A K+V +K++
Sbjct: 3 TSSIKINFQGTSRDVNVPVP-VTLASLQAAIAGAFDAELPVRSPAGEAAKDTDLSFTYKDPDGDDIVFDKDSELNLAVRLCPGSLEISAAGKEN-KPANKPDPEARLYKIAARNLREYNGVPSMTPLKLVKTLAFLELNPQRLVKQGLAPKVLLARMKAEAANN-----AKVSKVPLGDGKNNEDLAESVAAGMELMSVEDD-KKEWNDGFVSVEPADTSSPGNDNEEKNDAV---------------------------APEVKKNL---IHKAFIAGGIQLRPREVRPLLVALDVRPCRLAKLGLVNGKDLRAMLQAEKKVAHKRR 292
BLAST of mRNA_P-littoralis_Contig14.94.7 vs. uniprot
Match: D8LN66_ECTSI (PB1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN66_ECTSI) HSP 1 Score: 308 bits (790), Expect = 9.450e-93 Identity = 194/338 (57.40%), Postives = 225/338 (66.57%), Query Frame = 2
Query: 98 NNNNMNTSTTATRSIKITFQGASRDVEVAADQATLAGLQAAIASAFEADLPPRSGDDEAPKDSDLRFTYKDPDGDSIVFDKDSELSLALRLCPSSLEISAAGKEKVKPANKHDREHRLYKVAARNLREYNGVPSMTPTKLTKTLAFLKLNPRRLVNQGLAPQVLLADVEDENAKSNENTAAATQQHPLGDDDCNEDLAESVAAGVEAMRVEDDDKKEWNDGFVSVEPAQSAAPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAAKGKRPVDRPVHKAFVAGGIKLLPREIWPLLVALGVGPRRLVKLGHVNAEHLRAMAVAHKRVNNKQ 1111
NN + N +T T SIKI FQGASRDV V A TLA LQA IA+AF+A+LP RS EA KD+DL FTYKDPDGD IVFDKDSEL LA+RLCP SLEISAAGKEK K A D E RLYK+AARNLREYNGVPSMTP KL KTLAFLKLNP+RLV QGLAP+ LL ++ E A + A + PLGD NEDLAESVAAG+E M +EDD KKEWNDGFVSVEPA +++P A + K+ + +HKAF+AGGI+L PRE+ PLLVAL V P RL KLG V+ + LRAM A K+ +K+
Sbjct: 8 NNRDNNDNTMTTSSIKINFQGASRDVNVPAP-VTLASLQAVIAAAFDAELPVRSPGGEAAKDTDLSFTYKDPDGDDIVFDKDSELKLAMRLCPGSLEISAAGKEK-KAAEMPDSEARLYKIAARNLREYNGVPSMTPPKLVKTLAFLKLNPQRLVKQGLAPKNLLPRMKAEAANN-----AKVSKVPLGDGKNNEDLAESVAAGMELMSLEDD-KKEWNDGFVSVEPADTSSPDNDNEEKNDAV---------------------------APEVKKNL---IHKAFIAGGIQLRPREVRPLLVALDVRPCRLAKLGLVDGKDLRAMLQAEKKTAHKR 307
BLAST of mRNA_P-littoralis_Contig14.94.7 vs. uniprot
Match: A0A6H5JPU3_9PHAE (PB1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPU3_9PHAE) HSP 1 Score: 301 bits (770), Expect = 9.200e-90 Identity = 189/330 (57.27%), Postives = 216/330 (65.45%), Query Frame = 2
Query: 122 TTATRSIKITFQGASRDVEVAADQATLAGLQAAIASAFEADLPPRSGDDEAPKDSDLRFTYKDPDGDSIVFDKDSELSLALRLCPSSLEISAAGKEKVKPANKHDREHRLYKVAARNLREYNGVPSMTPTKLTKTLAFLKLNPRRLVNQGLAPQVLLADVEDENAKSNENTAAATQQHPLGDDDCNEDLAESVAAGVEAMRVEDDDKKEWNDGFVSVEPAQSAAPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAAKGKRPVDRPVHKAFVAGGIKLLPREIWPLLVALGVGPRRLVKLGHVNAEHLRAMAVAHKRVNNKQ 1111
T T SIKITFQGASRDV V LA LQAAIA+AF+ +LP RS EA D+DL FTYKDPDGD IVFDK+SEL LALRLCP SLEISAAGKE K D E +LYK+AARNLREYNGVPSMTP KL KTLAFLKLNP+RLV QGLAP+VLLA ++ E A + A + PLGD NEDLAESVAAG+E M VED KKEWNDGFVSVEPA+ + PA A + K+ + +HKAF+AGGI+L PRE+ PLLVAL V P RL KLG V + LRAM A K+ +K+
Sbjct: 18 TMTTSSIKITFQGASRDVNVRVP-VMLASLQAAIAAAFDVELPARSSAGEAANDTDLSFTYKDPDGDDIVFDKESELQLALRLCPGSLEISAAGKEN-KATRMPDSEEKLYKIAARNLREYNGVPSMTPPKLVKTLAFLKLNPQRLVKQGLAPKVLLARMKAEAANN-----AKVSKVPLGDGKNNEDLAESVAAGMELMSVEDG-KKEWNDGFVSVEPAEISFPANDNEEKNDA----------------------------APEAKKNL---IHKAFIAGGIQLRPREVRPLLVALDVLPYRLAKLGLVGGKDLRAMLRAEKKTAHKR 308
BLAST of mRNA_P-littoralis_Contig14.94.7 vs. uniprot
Match: A0A6H5KAY7_9PHAE (PB1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAY7_9PHAE) HSP 1 Score: 300 bits (767), Expect = 2.360e-89 Identity = 196/348 (56.32%), Postives = 226/348 (64.94%), Query Frame = 2
Query: 80 TTDNTI----NNNNMNTSTTATRSIKITFQGASRDVEVAADQATLAGLQAAIASAFEADLPPRSGDDEAPKDSDLRFTYKDPDGDSIVFDKDSELSLALRLCPSSLEISAAGKEKVKPANKHDREHRLYKVAARNLREYNGVPSMTPTKLTKTLAFLKLNPRRLVNQGLAPQVLLADVEDENAKSNENTAAATQQHPLGDDDCNEDLAESVAAGVEAMRVEDDDKKEWNDGFVSVEPAQSAAPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAAKGKRPVDRPVHKAFVAGGIKLLPREIWPLLVALGVGPRRLVKLGHVNAEHLRAMAVAHKRVNNKQ 1111
T+ NTI NN N T T SIKI FQGASRDV V A ATLA LQAAIA+ FE +LP RS EA KD+DL FTYKDPDGD IVFDKDSEL+LALRLCP SLEISAAGKE K D E LYK+AARNLREYNGVPSMTP KL KTLAFLKLNP+RLV QGLAP++LLA ++ E A + A + LGD NEDLAE VAAG+E M VEDD KKEWNDGFVSVEPA++++ A + K+ + +HKAF+AGGI+L PRE+ PLLVAL V P RL KLG V+ + LRAM A K+ +K+
Sbjct: 9 TSKNTIKYNRNNRYNNDKTMTTSSIKINFQGASRDVSVPAP-ATLARLQAAIAAVFEVELPVRSLTGEAAKDTDLSFTYKDPDGDDIVFDKDSELNLALRLCPGSLEISAAGKEN-KATKMPDSEETLYKIAARNLREYNGVPSMTPPKLVKTLAFLKLNPQRLVKQGLAPKMLLARMKAETANN-----AKLSKVRLGDGKNNEDLAEWVAAGMEFMSVEDD-KKEWNDGFVSVEPAETSS---------------------------SDNGNEEENDDAAPEVKQNL---IHKAFIAGGIQLRPREVRPLLVALDVRPWRLAKLGLVDGKDLRAMLQAEKKAAHKR 318
BLAST of mRNA_P-littoralis_Contig14.94.7 vs. uniprot
Match: A0A6H5JQ17_9PHAE (PB1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ17_9PHAE) HSP 1 Score: 299 bits (766), Expect = 2.670e-88 Identity = 196/347 (56.48%), Postives = 225/347 (64.84%), Query Frame = 2
Query: 74 MNTTDNTINNNNMNTSTTATR-SIKITFQGASRDVEVAADQATLAGLQAAIASAFEADLPPRSGDDEAPKDSDLRFTYKDPDGDSIVFDKDSELSLALRLCPSSLEISAAGKEKVKPANKHDREHRLYKVAARNLREYNGVPSMTPTKLTKTLAFLKLNPRRLVNQGLAPQVLLADVEDENAKSNENTAAATQQHPLGDDDCNEDLAESVAAGVEAMRVEDDDKKEWNDGFVSVEPAQSAAPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAAKGKRPVDRPVHKAFVAGGIKLLPREIWPLLVALGVGPRRLVKLGHVNAEHLRAMAVAHKRVNNKQ 1111
MN ++ NNN N T T SIKI FQGASRDV V A +LA LQAAIA+AF+A+LP RS EA KD+DL FTYKDPDGD IVFDKDSEL LA+RLCPSSLEISA KE +PA K D E RLYK+AARNLREYNGVPSMT KL KTLAFLKLNP+RLV QGLAP+VLLA ++ E A + A + PLGD NEDLAESVAAG+E M VEDD KKEWNDGFVS E SAA A + K+ + +HKAF+ GGI+L PRE+ PLLVAL V P RL KLG V+ + LRAM A K+ +K+
Sbjct: 1 MNAINHNNNNNRYNNDKTMTTPSIKINFQGASRDVNVPAP-VSLASLQAAIAAAFDAELPVRSPAGEAAKDTDLSFTYKDPDGDDIVFDKDSELKLAVRLCPSSLEISATLKES-EPAKKPDPEARLYKIAARNLREYNGVPSMTAPKLIKTLAFLKLNPQRLVKQGLAPKVLLARMKAEAANN-----AKVSKVPLGDGKNNEDLAESVAAGMELMSVEDD-KKEWNDGFVSAESDASAAAVPITAKTSTPDNDNEEENNDA-----------------APETKKDL---IHKAFITGGIQLRPREVRPLLVALDVRPCRLAKLGLVDGKDLRAMLRAEKKAAHKR 319
BLAST of mRNA_P-littoralis_Contig14.94.7 vs. uniprot
Match: A0A6H5KB69_9PHAE (PB1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB69_9PHAE) HSP 1 Score: 287 bits (735), Expect = 1.620e-83 Identity = 187/327 (57.19%), Postives = 216/327 (66.06%), Query Frame = 2
Query: 131 TRSIKITFQGASRDVEVAADQATLAGLQAAIASAFEADLPPRSGDDEAPKDSDLRFTYKDPDGDSIVFDKDSELSLALRLCPSSLEISAAGKEKVKPANKHDREHRLYKVAARNLREYNGVPSMTPTKLTKTLAFLKLNPRRLVNQGLAPQVLLADVEDENAKSNENTAAATQQHPLGDDDCNEDLAESVAAGVEAMRVEDDDKKEWNDGFVSVEPAQSAAPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAAKGKRPVDRPVHKAFVAGGIKLLPREIWPLLVALGVGPRRLVKLGHVNAEHLRAMAVAHKRVNNKQ 1111
T SIKI FQG SR+V V A TLA LQA IA+AF+A+LP RS EA KD+DL FTYKDPDGD IVFDKDSEL+LA+RLCP SLEISAAGKE KP NK D E RLYK+AARNLREYNGVPSMT KL KTLAFLKLNPRRLV QGLAP+ LLA ++ E A +N + T LGD + NEDLAESVAAG+E M VEDD KKE N+GFVS +P SAA A + K+ + +H AF+AGGI+L PRE+ PLLVAL V P RL KLG VN ++LRAM A + +K+
Sbjct: 3 TSSIKINFQGTSRNVNVQAPF-TLASLQATIAAAFDAELPVRSPAGEATKDTDLSFTYKDPDGDDIVFDKDSELNLAVRLCPDSLEISAAGKEN-KPDNKPDPEGRLYKIAARNLREYNGVPSMTAPKLIKTLAFLKLNPRRLVKQGLAPKNLLARMKAE-AANNMKVSKVT----LGDGENNEDLAESVAAGMELMSVEDD-KKECNNGFVSAKPDASAAAVPITAKTSSPDNDNEEENDDA-----------------APEVKKNL---IHTAFIAGGIQLRPREVRPLLVALDVRPWRLAKLGLVNGKYLRAMLQAETKAAHKR 301
BLAST of mRNA_P-littoralis_Contig14.94.7 vs. uniprot
Match: D8LN82_ECTSI (PB1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN82_ECTSI) HSP 1 Score: 269 bits (688), Expect = 1.410e-79 Identity = 177/303 (58.42%), Postives = 198/303 (65.35%), Query Frame = 2
Query: 89 NTINNNNM--NTSTTATRSIKITFQGASRDVEVAADQATLAGLQAAIASAFEADLPPRSGDDEAPKDSDLRFTYKDPDGDSIVFDKDSELSLALRLCPSSLEISAAGKEKVKPANKHDREHRLYKVAARNLREYNGVPSMTPTKLTKTLAFLKLNPRRLVNQGLAPQVLLADVEDENAKSNENTAAATQQHPLGDDDCNEDLAESVAAGVEAMRVEDDDKKEWNDGFVSVEPAQSAAPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAAKGKRPVDRPVHKAFVAGGIKLLPRE 991
NTI +NN N T SIKI FQGASRDV V A TL LQAAIA+AF+A+LP RS EA KD+DL FTYKDPDGD IVFDKDSEL LA+RLCPSSLEISAA KE KPANK D E RLYK+AARNLREYNGVPSMTP KL KTLAFLKLNP+RLV QGLAP+VLLA ++ E A + A + PLGD NEDLA+SVAAG+E M VED KKEWNDGFVS E AA A A + K+ + +HKAF+AGGI+L PRE
Sbjct: 2 NTIKHNNCDNNDKMMTTSSIKINFQGASRDVNVPAP-VTLDSLQAAIAAAFDAELPVRSPAGEAAKDTDLSFTYKDPDGDDIVFDKDSELKLAVRLCPSSLEISAALKES-KPANKPDPEARLYKIAARNLREYNGVPSMTPPKLIKTLAFLKLNPQRLVKQGLAPKVLLARMKAEAANN-----AKVSKVPLGDGKNNEDLADSVAAGMELMSVED--KKEWNDGFVSAESDAPAAAAPITAETSSPDNDKEEENDDA-----------------APEVKKNL---IHKAFIAGGIQLRPRE 275
BLAST of mRNA_P-littoralis_Contig14.94.7 vs. uniprot
Match: A0A6H5KI70_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI70_9PHAE) HSP 1 Score: 62.8 bits (151), Expect = 1.310e-7 Identity = 31/47 (65.96%), Postives = 36/47 (76.60%), Query Frame = 2
Query: 449 LYKVAARNLREYNGVPSMTPTKLTKTLAFLKLNPRRLVNQGLAPQVL 589
LYK AARNLREY+GVPSMT L KT+ L+L P RLV QGLAP+ +
Sbjct: 53 LYKAAARNLREYHGVPSMTAGGLEKTMVLLQLRPGRLVAQGLAPKXI 99
BLAST of mRNA_P-littoralis_Contig14.94.7 vs. uniprot
Match: A0A6H5KBH6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBH6_9PHAE) HSP 1 Score: 61.2 bits (147), Expect = 6.410e-7 Identity = 31/48 (64.58%), Postives = 36/48 (75.00%), Query Frame = 2
Query: 449 LYKVAARNLREYNGVPSMTPTKLTKTLAFLKLNPRRLVNQGLAPQVLL 592
LYK AARNLREY+GVPS+T L KT+ L+L P RLV QGLAP+ L
Sbjct: 57 LYKAAARNLREYHGVPSITVGGLEKTMVLLQLRPGRLVAQGLAPKQFL 104
BLAST of mRNA_P-littoralis_Contig14.94.7 vs. uniprot
Match: A0A6H5JCG1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCG1_9PHAE) HSP 1 Score: 63.9 bits (154), Expect = 7.340e-7 Identity = 30/48 (62.50%), Postives = 38/48 (79.17%), Query Frame = 2
Query: 449 LYKVAARNLREYNGVPSMTPTKLTKTLAFLKLNPRRLVNQGLAPQVLL 592
++K AARNLREY+GVPS+TP L T+ L+L P RLV QGLAP++LL
Sbjct: 41 MFKAAARNLREYHGVPSITPGGLETTMVLLELRPARLVAQGLAPKILL 88 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig14.94.7 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig14.94.7 >prot_P-littoralis_Contig14.94.7 ID=prot_P-littoralis_Contig14.94.7|Name=mRNA_P-littoralis_Contig14.94.7|organism=Pylaiella littoralis U1_48|type=polypeptide|length=588bp MNTTDNTINNNNMNTSTTATRSIKITFQGASRDVEVAADQATLAGLQAAIback to top mRNA from alignment at P-littoralis_Contig14:432558..436837+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig14.94.7 ID=mRNA_P-littoralis_Contig14.94.7|Name=mRNA_P-littoralis_Contig14.94.7|organism=Pylaiella littoralis U1_48|type=mRNA|length=4280bp|location=Sequence derived from alignment at P-littoralis_Contig14:432558..436837+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig14:432558..436837+ >mRNA_P-littoralis_Contig14.94.7 ID=mRNA_P-littoralis_Contig14.94.7|Name=mRNA_P-littoralis_Contig14.94.7|organism=Pylaiella littoralis U1_48|type=CDS|length=1764bp|location=Sequence derived from alignment at P-littoralis_Contig14:432558..436837+ (Pylaiella littoralis U1_48)back to top |