mRNA_P-littoralis_Contig14.69.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig14.69.1
Unique NamemRNA_P-littoralis_Contig14.69.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig14.69.1 vs. uniprot
Match: D8LN84_ECTSI (Ribosomal protein rpl30 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LN84_ECTSI)

HSP 1 Score: 216 bits (551), Expect = 5.640e-67
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 3 
Query:   39 MAPGKKSKKAIESMNARLQLVMKSGKASLGYKSTIKSMRSTRAKMVLISNNCPPLRKSEIEYFAMLAKCAVHHYTGSNTDLGTACGKYFRVSVLSITDAGDSDILRQGAEA 371
            MAPGKKSKKAIESMNARLQLVMKSGKASLGYKSTIKSMRSTRAKMVLISNNCPPLRKSEIEYFAMLAKCAVHHYTGSNTDLGTACGKYFRVSVLSITDAGDSDILRQGAEA
Sbjct:    1 MAPGKKSKKAIESMNARLQLVMKSGKASLGYKSTIKSMRSTRAKMVLISNNCPPLRKSEIEYFAMLAKCAVHHYTGSNTDLGTACGKYFRVSVLSITDAGDSDILRQGAEA 111
[Close]
BLAST of mRNA_P-littoralis_Contig14.69.1 vs. uniprot
Match: A0A835YXX2_9STRA (Ribosomal protein rpl30 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXX2_9STRA)

HSP 1 Score: 180 bits (456), Expect = 1.020e-52
Identity = 87/106 (82.08%), Postives = 100/106 (94.34%), Query Frame = 3 
Query:   39 MAPGKKSKKAIESMNARLQLVMKSGKASLGYKSTIKSMRSTRAKMVLISNNCPPLRKSEIEYFAMLAKCAVHHYTGSNTDLGTACGKYFRVSVLSITDAGDSDILR 356
            MAP KK+KK IES+N RLQLVM+SGKASLGYK T+K MR+++AKM++ISNNCPPLRKSEIEY+A+LAKC VHHY+GSNTDLGTACGKYFRVSVL+ITDAGDSDILR
Sbjct:    1 MAPIKKAKKTIESINTRLQLVMRSGKASLGYKQTLKCMRTSKAKMIIISNNCPPLRKSEIEYYALLAKCNVHHYSGSNTDLGTACGKYFRVSVLAITDAGDSDILR 106
[Close]
BLAST of mRNA_P-littoralis_Contig14.69.1 vs. uniprot
Match: A0A812PA55_SYMMI (RPL30 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812PA55_SYMMI)

HSP 1 Score: 172 bits (437), Expect = 7.230e-50
Identity = 82/108 (75.93%), Postives = 102/108 (94.44%), Query Frame = 3 
Query:   39 MAP--GKKSKKAIESMNARLQLVMKSGKASLGYKSTIKSMRSTRAKMVLISNNCPPLRKSEIEYFAMLAKCAVHHYTGSNTDLGTACGKYFRVSVLSITDAGDSDILR 356
            MAP  GKK+KK +ES+N+RLQLVM+SGKASLGYK+TIK++R+T+AK+V+IS+NCPPLRKSEIEY+AMLAKC VHHY G+N+DLGTACGK++RVS+LS+TD GDSDILR
Sbjct:    1 MAPAAGKKTKKTVESINSRLQLVMRSGKASLGYKTTIKTLRNTKAKLVIISSNCPPLRKSEIEYYAMLAKCTVHHYAGTNSDLGTACGKFYRVSMLSVTDGGDSDILR 108
[Close]
BLAST of mRNA_P-littoralis_Contig14.69.1 vs. uniprot
Match: A0A7S3HF33_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HF33_9STRA)

HSP 1 Score: 166 bits (419), Expect = 3.710e-47
Identity = 77/110 (70.00%), Postives = 101/110 (91.82%), Query Frame = 3 
Query:   30 PAKMAPGKKSKKAIESMNARLQLVMKSGKASLGYKSTIKSMRSTRAKMVLISNNCPPLRKSEIEYFAMLAKCAVHHYTGSNTDLGTACGKYFRVSVLSITDAGDSDILRQ 359
            P +   GKK+KKA+ES+N+++QLVMKSGK +LGYK+TIK++R+ +AKMVLI++N PPLRKSE+EY+AMLAKC VHHY G+N++LGTACGK++RVS++SITDAGDSDILRQ
Sbjct:    3 PVQAQVGKKTKKAVESINSKVQLVMKSGKTALGYKTTIKALRANKAKMVLIASNTPPLRKSEVEYYAMLAKCVVHHYAGNNSELGTACGKFYRVSMVSITDAGDSDILRQ 112
[Close]
BLAST of mRNA_P-littoralis_Contig14.69.1 vs. uniprot
Match: A0A261XVZ6_9FUNG (60S ribosomal protein L30-1 n=1 Tax=Bifiguratus adelaidae TaxID=1938954 RepID=A0A261XVZ6_9FUNG)

HSP 1 Score: 164 bits (415), Expect = 1.250e-46
Identity = 80/105 (76.19%), Postives = 96/105 (91.43%), Query Frame = 3 
Query:   39 MAPGKKSKKAIESMNARLQLVMKSGKASLGYKSTIKSMRSTRAKMVLISNNCPPLRKSEIEYFAMLAKCAVHHYTGSNTDLGTACGKYFRVSVLSITDAGDSDIL 353
            MAP KKSKK++ES+N+RLQLVMKSGK +LGYKST+KS+R+ +AK++LI+ NCPPLRKSEIEY+AML+K  VHHYTG+N +LGTACGK FR SVLSITDAGDSDIL
Sbjct:    1 MAPVKKSKKSVESINSRLQLVMKSGKYNLGYKSTLKSVRAGKAKLILIAGNCPPLRKSEIEYYAMLSKTGVHHYTGNNIELGTACGKLFRCSVLSITDAGDSDIL 105
[Close]
BLAST of mRNA_P-littoralis_Contig14.69.1 vs. uniprot
Match: A0A1Y1Z8Q1_9FUNG (60S ribosomal protein n=4 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1Z8Q1_9FUNG)

HSP 1 Score: 164 bits (414), Expect = 1.870e-46
Identity = 77/106 (72.64%), Postives = 98/106 (92.45%), Query Frame = 3 
Query:   39 MAPGKKSKKAIESMNARLQLVMKSGKASLGYKSTIKSMRSTRAKMVLISNNCPPLRKSEIEYFAMLAKCAVHHYTGSNTDLGTACGKYFRVSVLSITDAGDSDILR 356
            MAP KKSKK++ES+N+RL LVMKSGK++LGYKST+KS+R+ +AK++++S NCPPLRKSEIEY+AML+K +VHHY G+N +LGTACGKYFRV VL+ITDAGDSDIL+
Sbjct:    1 MAPIKKSKKSVESINSRLALVMKSGKSNLGYKSTLKSIRNGKAKLIILSGNCPPLRKSEIEYYAMLSKTSVHHYNGNNIELGTACGKYFRVGVLAITDAGDSDILK 106
[Close]
BLAST of mRNA_P-littoralis_Contig14.69.1 vs. uniprot
Match: A0A7S2USR9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2USR9_9STRA)

HSP 1 Score: 164 bits (416), Expect = 3.220e-46
Identity = 81/113 (71.68%), Postives = 99/113 (87.61%), Query Frame = 3 
Query:   39 MAPGKK--SKKAIESMNARLQLVMKSGKASLGYKSTIKSMRSTRAKMVLISNNCPPLRKSEIEYFAMLAKCAVHHYTGSNTDLGTACGKYFRVSVLSITDAGDSDILRQGAEA 371
            MAP KK  SKK +E+MN++LQLVMKSGKASLGYKS+IK++R+ +AK+VL+S NCPPLR+SEIEY+AMLAK  VHHY G+NTDLGTACGKYFRV VL +T+AGDS+ILR   E+
Sbjct:   38 MAPSKKVSSKKTVENMNSQLQLVMKSGKASLGYKSSIKALRNNKAKLVLVSKNCPPLRRSEIEYYAMLAKVGVHHYAGNNTDLGTACGKYFRVGVLCVTNAGDSEILRSIPES 150
[Close]
BLAST of mRNA_P-littoralis_Contig14.69.1 vs. uniprot
Match: A0A7S1BKT7_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BKT7_9STRA)

HSP 1 Score: 162 bits (409), Expect = 1.010e-45
Identity = 78/110 (70.91%), Postives = 100/110 (90.91%), Query Frame = 3 
Query:   39 MAPGKKSKKAIESMNARLQLVMKSGKASLGYKSTIKSMRSTRAKMVLISNNCPPLRKSEIEYFAMLAKCAVHHYTGSNTDLGTACGKYFRVSVLSITDAGDSDILRQGAE 368
            MAP KK+KK  ESMN+RL+LVMKSGKA+LGYK+TI+S+RS++AK++L+++NCPPLRKSE+EY+AMLAK  VHHY+G+NT+LGTACGK+F  SVL++ DAGDSDIL  GAE
Sbjct:    1 MAP-KKAKKTTESMNSRLKLVMKSGKATLGYKATIRSLRSSKAKLILVASNCPPLRKSELEYYAMLAKTHVHHYSGNNTELGTACGKFFNCSVLTVLDAGDSDILTVGAE 109
[Close]
BLAST of mRNA_P-littoralis_Contig14.69.1 vs. uniprot
Match: L8GX53_ACACA (60S ribosomal protein, putative n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GX53_ACACA)

HSP 1 Score: 162 bits (409), Expect = 1.070e-45
Identity = 80/107 (74.77%), Postives = 92/107 (85.98%), Query Frame = 3 
Query:   39 MAPGKKSKKAIESMNARLQLVMKSGKASLGYKSTIKSMRSTRAKMVLISNNCPPLRKSEIEYFAMLAKCAVHHYTGSNTDLGTACGKYFRVSVLSITDAGDSDILRQ 359
            M   KK KKA ES+N+RL LVMKSGK +LGYKST+KS+R  +AK+++IS NCPPLRKSEIEY+AMLAK  VHHYTG+N DLGTACGKYFRVS LSITD GDSDI+RQ
Sbjct:    1 MVSTKKQKKAQESINSRLALVMKSGKYTLGYKSTLKSLRQGKAKLIIISTNCPPLRKSEIEYYAMLAKTGVHHYTGNNIDLGTACGKYFRVSSLSITDPGDSDIIRQ 107
[Close]
BLAST of mRNA_P-littoralis_Contig14.69.1 vs. uniprot
Match: A0A7S2AKD1_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AKD1_9STRA)

HSP 1 Score: 162 bits (411), Expect = 1.080e-45
Identity = 78/105 (74.29%), Postives = 95/105 (90.48%), Query Frame = 3 
Query:   39 MAPGKKSKKAIESMNARLQLVMKSGKASLGYKSTIKSMRSTRAKMVLISNNCPPLRKSEIEYFAMLAKCAVHHYTGSNTDLGTACGKYFRVSVLSITDAGDSDIL 353
            MAPGKKSK+A+ES+N+RLQLVMKSGKA LGYKST+KS+RS + KMV++SNN PPL+KSEIEY++MLAK  V HY+G+N+DLGTACGKYFRV  +SI DAGDSDI+
Sbjct:   23 MAPGKKSKRAVESINSRLQLVMKSGKAELGYKSTLKSLRSGKCKMVILSNNTPPLKKSEIEYYSMLAKVTVTHYSGTNSDLGTACGKYFRVGTVSIIDAGDSDII 127
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig14.69.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LN84_ECTSI5.640e-67100.00Ribosomal protein rpl30 n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YXX2_9STRA1.020e-5282.08Ribosomal protein rpl30 n=1 Tax=Tribonema minus Ta... [more]
A0A812PA55_SYMMI7.230e-5075.93RPL30 protein n=1 Tax=Symbiodinium microadriaticum... [more]
A0A7S3HF33_9STRA3.710e-4770.00Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A261XVZ6_9FUNG1.250e-4676.1960S ribosomal protein L30-1 n=1 Tax=Bifiguratus ad... [more]
A0A1Y1Z8Q1_9FUNG1.870e-4672.6460S ribosomal protein n=4 Tax=Basidiobolus meristo... [more]
A0A7S2USR9_9STRA3.220e-4671.68Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S1BKT7_9STRA1.010e-4570.91Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
L8GX53_ACACA1.070e-4574.7760S ribosomal protein, putative n=1 Tax=Acanthamoe... [more]
A0A7S2AKD1_9STRA1.080e-4574.29Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig14contigP-littoralis_Contig14:331962..336914 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LN84
Preferred nameRPL30
PFAMsRibosomal_L7Ae
Model size1172
Max annot lvl2759|Eukaryota
KEGG koko:K02866,ko:K02908
KEGG Pathwayko03010,map03010
KEGG ModuleM00177,M00179
Hectar predicted targeting categoryother localisation
GOsGO:0000184,GO:0000956,GO:0001889,GO:0001906,GO:0002181,GO:0002376,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005840,GO:0005844,GO:0006139,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006417,GO:0006448,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006950,GO:0006952,GO:0006955,GO:0006959,GO:0007275,GO:0007399,GO:0007422,GO:0007568,GO:0008104,GO:0008150,GO:0008152,GO:0008340,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009605,GO:0009607,GO:0009617,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010259,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0015031,GO:0015833,GO:0015934,GO:0016070,GO:0016071,GO:0016072,GO:0019219,GO:0019222,GO:0019439,GO:0019538,GO:0019730,GO:0022613,GO:0022625,GO:0022626,GO:0030627,GO:0031099,GO:0031100,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031328,GO:0031640,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033119,GO:0033365,GO:0034248,GO:0034250,GO:0034470,GO:0034613,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0035368,GO:0035821,GO:0036002,GO:0040007,GO:0042254,GO:0042742,GO:0042788,GO:0042886,GO:0043043,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043484,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044364,GO:0044391,GO:0044419,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0045727,GO:0045901,GO:0045934,GO:0046483,GO:0046700,GO:0046907,GO:0048024,GO:0048025,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048731,GO:0048732,GO:0048856,GO:0050684,GO:0050686,GO:0050789,GO:0050794,GO:0050829,GO:0050896,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051252,GO:0051253,GO:0051641,GO:0051649,GO:0051704,GO:0051707,GO:0060255,GO:0061008,GO:0061844,GO:0065007,GO:0070727,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0072599,GO:0072657,GO:0080090,GO:0090150,GO:0090304,GO:0097159,GO:0097421,GO:0098542,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1903311,GO:1903312,GO:1904569,GO:1904571,GO:1990904,GO:2000112
Exons2
Evalue2.48e-72
EggNOG OGsCOG1911@1|root,KOG2988@2759|Eukaryota
Ec32 ortholog description60S ribosomal protein L30
Ec32 orthologEc-05_003900.1
Descriptionstructural constituent of ribosome
Cds size336
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789648.366285-UTR-P-littoralis_Contig14:331961..3319991680789648.366285-UTR-P-littoralis_Contig14:331961..331999Pylaiella littoralis U1_48UTRP-littoralis_Contig14 331962..331999 +
1680789648.4001646-UTR-P-littoralis_Contig14:336116..3369141680789648.4001646-UTR-P-littoralis_Contig14:336116..336914Pylaiella littoralis U1_48UTRP-littoralis_Contig14 336117..336914 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789648.3794732-CDS-P-littoralis_Contig14:331999..3320201680789648.3794732-CDS-P-littoralis_Contig14:331999..332020Pylaiella littoralis U1_48CDSP-littoralis_Contig14 332000..332020 +
1680789648.391136-CDS-P-littoralis_Contig14:335801..3361161680789648.391136-CDS-P-littoralis_Contig14:335801..336116Pylaiella littoralis U1_48CDSP-littoralis_Contig14 335802..336116 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig14.69.1prot_P-littoralis_Contig14.69.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig14 332000..336116 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig14.69.1

>prot_P-littoralis_Contig14.69.1 ID=prot_P-littoralis_Contig14.69.1|Name=mRNA_P-littoralis_Contig14.69.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=112bp
MAPGKKSKKAIESMNARLQLVMKSGKASLGYKSTIKSMRSTRAKMVLISN
NCPPLRKSEIEYFAMLAKCAVHHYTGSNTDLGTACGKYFRVSVLSITDAG
DSDILRQGAEA*
back to top

mRNA from alignment at P-littoralis_Contig14:331962..336914+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig14.69.1 ID=mRNA_P-littoralis_Contig14.69.1|Name=mRNA_P-littoralis_Contig14.69.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4953bp|location=Sequence derived from alignment at P-littoralis_Contig14:331962..336914+ (Pylaiella littoralis U1_48)
TCTCCGCCCCCCGTGTCCTCTCCAACCCTCCAGCGAAGATGGCTCCCGGA
AAGAAATCGGTGGGTGATGATGATCCTGCCCACTGTAAATGGCACCATAC
TACTACAGCAGGCGGCCATGGGTAGTGTGGAAACGATCAGTTAGATCAGT
CCAGCACAGACAAGAGATTCGTGGCTCCTGTGTGTCAAGTGCCTGCGCGA
TCCGCAGATGGGGCGCTCGCCGTGCCTTTTGTCCCTATCCCAAGCGGAAA
AAGACAAAAGAGCGCGAGAAGCGCCTCTATCTCGGGGATAGGCGAGTGTA
GCCTGCTTCTCTTGCCATCTCGGCCCATCATAATCAAGTTTCCGAGAGAT
CCGCGCTTTTTTGAAGCGTGGGGACGGTTTTTTTCGTGGCCCTCAAATCA
CCAACGCGGTTGGTACAAAATGTGCGCAGTTTTGAGATTTCTCGAGTAAG
CAGTTTCTCTTGGCATTGTAAGGTTTCTCCACGAAGGTGTGACTGCTGCC
GATGTACCGTATGCCTCTCCTTCCTGCTGTACCTGTATTAATGCTCACCT
TCAGGTCTCATGTGGGACACTCTACTGCGTGCTCTTGTGTGATCTGTGGT
CCACCCCAACCAAAAATGCGGCGGAATTACCCCTGCCAGTTTTCGTATAA
TAGAAACCTGGGAACCCCTAGCCATGAAAACCGCACATCGCGACTCACAA
CCTCTCGATACAGAGGGCGCCCGCAAGTGAGAAACGTAAGATATTGGTCG
AGCCTCAATTTCCTATTTTTGACCGACTTGCCAGCCTATTTTGCCGATTT
TCTTATTCGCCGTTTCTTATTTTTGAGGCCTTGTAGGATTAGCTCGTTTT
CTTGCAAAATGCTACATGGGGCCCGGTCTGAACAGGGGGGTTCGCAAATG
TTTGTACTGTACCCATAGGCCACCAAAAAATACACCCACCCTTGGTAGGG
GTGGGCACCAGACTCCAACGGCCGTTTCATATTTTTCTAACCCTCTCCTA
TGCGCTTCGTTTCTTGTGGTTTGGAGCGGTCTTGCCCTCAGTTTCTTGTT
AGGGTGTTTCTTACTTGATGGCCCAGGTTGAGGGTGTTTCTTACCGGAAT
TTTCTTACTTTTTGCGGAAATCTGAGCCTAAATTTCTTACTTGAATTTTT
CTTACTTGCGGGCGCCCTCTGTAGTCTTCTTTGTCACCAGGTGTGTGCTG
GATCGTAGCAAATAAGAAACAACCCGTCGCCACCGCAGCAGCAGCTGCTA
GATTTGCACTCGTGCGCCGTGTCCAAGTTCCAGTAGCACTGCTGCTGTGA
TGGGATTCTCTTCCGTGATGTGTGTCCGTCCGTAGAGCAGCGTAGTGATG
CCTTTATTTGTTCTCGACGCTCTCGTCTCGTTCAACTTTCGGCTTCAGGC
GCTCGCTAAACGCGTGGAGTACAACAAGTAGCATACCTGCGTCGATCACG
TTCGTGTCCGCGTAGGTTTTCGTGAACAATCGATGTGCGTAGACGACAAT
ACCCTTTCGTTGCGCTAGTATTCGCCGTTTGTATACCAGAGCACGTGATT
CTTCGACTTCCGCCACACCCTGGGAATTATCCAGGACAACTCGTTTCTCT
TCCCGACTGGTACATTGAGTATTTAGCCTTGGATCCGAAGTACGTAAATG
CGTGGATGTTTTCAACGCCGGTAGTACTTGGAATATAATTCCAACGAAGA
TGAAGCTGATCCGTGTGGTAAACATAACACCGCCGAAGTTGATGAACATG
TGATGTCCAGATGATGAACATGTACCGCCAGTCGTCTTTTTATGTTTCAG
GCACACCACCGCACTAGCGATCGTTAAACAAAGCGTTCAACTCTTGACAC
GTTCCTTCGTTTTGCGAATAATCCGCTCACACTATAATATGGTGTGGACG
CCTAGAGCTACAAATATACTCCTGAATACCTGGTACGCCGAAGTATTTCA
TGATCTAGGGACGATATCATGTATTGTTGAGAGGAACAGATTTTTACAAG
GAGCAAAGGGGCCCTGACCTTCACACACTGGGCGCTTCACACCTAGAAGG
GCGTTGGGAAAGATGAATGTTGTTGATGATCGCACACAGCGACGGCAGGG
GCTTCTCTTGCGATCTCCCTCATAAAAATCAAGGTAATTTTCGATCCCTT
TTAAAATCAAGCTAGTACAGCTAAGCTGGCTTAGCCTCTGACTCGTCAGT
TATGCAACTTGTCAGTTATGCAACTTGTCAGTTATGCAAAGGGGTAGTAT
CAAAGTATTTGAAGCAGTAGAGGGCACCATGGAGCAGCTTCGTGTGTCGA
CACGTTTAGACATGCTACTGGGGCTAAGATTTCGAAGACCGCAGCGGTGG
CCCAAAAAGTCCTCAAACTGCGGCCGAACTGGATCGACACCAAAAATGTG
CCACTAGCTACCTCTGACGCCCTGCAGTTCAGGTGGCTGGGGTTCGTGGC
GGCGAGCACAGCAGTGACAAAACCTTTGGTGTCGGTGTCGGTCCAATTAT
GGGGCTTTTTGAGGCACAGCCGAGTTCTTCGATGACTACGCCCCAGCAGC
ATGCTTAAACGCGCCGACATACACGTAGCTGCTAATGGTGCTTACTGACT
TGCGCACTTTGGCTGGAAAACTGACTAGTAAGTAGTAAGCCAACTGATTG
ACTTGACAAAATACTGAAATTTTTCCTTTGGATCCAAAATGGGACGTGTC
TTTTAAGATTTTCTTGTCGTCCTTGTCAGCAGATCCGTAAATGTGCTTCG
TCCTTTTTGCCTGGACAAAATTCGTTTTCCTCCCGTTGCTAGGGGAGGAA
TGTGCGAGCACGAATTTGCGCCGGGAAGCGCGTTCGACGCGGTTTGTCGT
GTTTCGCGGCAGGTGCATGTGCGCCGGCCGGGGTGTGTTCTTTGCCCGCC
GAAAGCCGCAGCTGTACGTTAGAAAAAGGGTGAAATTAGATCGTCACAGC
GTGGACCGTTTTCAAATTTTCCTTCATTTTTGGAATTTCGGCTTGAAGCG
AGAACCACACCAGTCGTCGGAATGCAATTTGTCCTCGCAAGCCCACATGG
TCCAAGCCCGGCCAAAAGTTGACCGCGTCATTGATACTTGCACACGGTTC
AAGGGTTCAAGCCAAGGGTGAAACAAAGTCATGAAATATTCGTGGGTTGT
GCCATGGCGCAAAAGCAGCGAAGACAAGCTTGGTTTGAGCGATACTGGGC
GAGCCTTCAGTCCACGCGACAAGGCTTGGAGGGGTGACCCCAAGCTCACC
CCTCGAAGCTTCATCACGTGGACCGGAGGCTCGGCCGACAGTGCGTGGAT
CAAGTTTGTCTCAAGTCAAGCTTCTAAGCGACTGCGCAACTGATGCCGGT
TTACGACGAATGAGTTTTATGTCATAGCAAGCTTACATGGTCTCTTATGT
ATGGTGTCGTTACATTTCACCCAGGATAATACTCTCCACACTGGAGTCCG
TACTTTTGAGTCACTTGTTGGCATACGTGAAGCCTTCGCCGGGTGACCGG
CTGTTTCCTTGTCGTTACCGTGCTGTTCTTTCACAAGCAGGCACGAAATT
GAGTCAACGTCCACCAATCTCTCTTTTTTTATTTCTTTGGAACGTGGGTG
TCAAGTTTATTTCTTGAGTGAAGAGTTTCAAATATGTGCATCACGCTCAC
ACAAATTATATGAGCCCAGACAAATCCTGCCATCGCTACTGCTCTTTTGC
CCGCCCCCTGCACCTTCCCCAACGGCGTAATCGTGTGCAACTTGTTGCTC
GCCACGCAACCACGCTGATCGATACCTTTCTCCTTTTTTATGGCCCTGTC
CGCTCTTTTTATTTCATTTTTCTTATTTTCACTCGAGCAGAAGAAGGCCA
TTGAGTCGATGAACGCCCGGCTCCAGCTGGTGATGAAGTCTGGCAAGGCC
TCTCTGGGTTACAAGTCCACCATCAAGTCCATGCGCAGCACCCGCGCGAA
GATGGTGCTCATCTCCAACAACTGCCCGCCCCTCCGCAAGTCGGAGATCG
AGTACTTCGCCATGCTTGCCAAGTGCGCCGTGCACCACTACACCGGCTCC
AACACCGACCTCGGCACCGCCTGCGGAAAGTACTTCCGCGTTTCGGTCCT
ATCCATCACCGACGCCGGAGACTCGGACATCCTCCGCCAGGGCGCGGAGG
CCTGAAGTCAAAAAGAAAAAAGTATTTTTTAAAACGTTTTCGAGCTTCGG
GCCTTGCAGCCATCGGTTGACTATTTGAGATGCAACGAGAGTGGAGATAA
AATCTGGGAGAAAAAAAGCAAGGAGGAAAACATTTTAGTTTGATTTTAGT
TTATTTCTGCTTTCTGAGGTGTGGTTCGTTTTGTGTCGTTGATTTGTCTG
ATTTGCGACGCTCTTGTCTGTTTAAATTACTCTTGGGTGATGAGATGGGC
GCAGACTACATTCGGATCAGCGATGTGACACAGTTGGCATTGCTGAGTAG
CAGGTCGTAAGCAAAAGTACTGAAGGAACCTCTGACCCTTTTTTTCTCTT
TTTTCAGTCGATATTGCGGCGCTACTGCGACTTATGTTCTGCGTGCTTGT
TATCCCGTTGACTCTTTGAGTCAACAGAGGCTTCTGGCACGTGAAATGGA
TAATTGGCGTAGCGGTGTTGTCGGTGGTTGAGGGGGGGTCAACGAGCGGC
GGGGGCAACGAACAGAGCAACAACCTTTTCAATTACGAGGTCTGAGTTAA
TCTAAATGATGGCCTCTCTTGTGTTTCGTACTTTTCTGCTTGTTTGTGCA
AGCAATGTACGCAAACGCGGGCGTTTTGCGCTGCCGTAGTTGTTAAGCGA
TGGCCTTTCATCCAGCAAACGGTACAAAGTACGCCTCAACGTCAAACCGT
TCGGCAATCGCCGCGCTATTCTCCACTTTCTCTCTTGGCTGGATGGCCCC
ACACGAGCGATCCGTCTCGCTTAAGATTTCCTTCAAGAAAATCACGAGCA
AGC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig14:331962..336914+

>mRNA_P-littoralis_Contig14.69.1 ID=mRNA_P-littoralis_Contig14.69.1|Name=mRNA_P-littoralis_Contig14.69.1|organism=Pylaiella littoralis U1_48|type=CDS|length=336bp|location=Sequence derived from alignment at P-littoralis_Contig14:331962..336914+ (Pylaiella littoralis U1_48)
ATGGCTCCCGGAAAGAAATCGAAGAAGGCCATTGAGTCGATGAACGCCCG
GCTCCAGCTGGTGATGAAGTCTGGCAAGGCCTCTCTGGGTTACAAGTCCA
CCATCAAGTCCATGCGCAGCACCCGCGCGAAGATGGTGCTCATCTCCAAC
AACTGCCCGCCCCTCCGCAAGTCGGAGATCGAGTACTTCGCCATGCTTGC
CAAGTGCGCCGTGCACCACTACACCGGCTCCAACACCGACCTCGGCACCG
CCTGCGGAAAGTACTTCCGCGTTTCGGTCCTATCCATCACCGACGCCGGA
GACTCGGACATCCTCCGCCAGGGCGCGGAGGCCTGA
back to top