mRNA_P-littoralis_Contig14.145.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig14.145.1
Unique NamemRNA_P-littoralis_Contig14.145.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig14.145.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig14contigP-littoralis_Contig14:632163..632569 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size409
Hectar predicted targeting categoryother localisation
Exons1
Cds size336
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789646.1235533-UTR-P-littoralis_Contig14:632162..6322331680789646.1235533-UTR-P-littoralis_Contig14:632162..632233Pylaiella littoralis U1_48UTRP-littoralis_Contig14 632163..632233 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789646.1330366-CDS-P-littoralis_Contig14:632233..6325691680789646.1330366-CDS-P-littoralis_Contig14:632233..632569Pylaiella littoralis U1_48CDSP-littoralis_Contig14 632234..632569 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig14.145.1prot_P-littoralis_Contig14.145.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig14 632234..632569 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig14.145.1

>prot_P-littoralis_Contig14.145.1 ID=prot_P-littoralis_Contig14.145.1|Name=mRNA_P-littoralis_Contig14.145.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=112bp
TSEDHAEKHGTSVTPAENRPTTRSRPPPPGGNVIGAPIANASTSSIPLSP
SPASPAATWRASSWSLLSYTFVAPSPACFPRVYLVEILVRARLSCPSVCL
SVCLIPLWKAR*
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mRNA from alignment at P-littoralis_Contig14:632163..632569-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig14.145.1 ID=mRNA_P-littoralis_Contig14.145.1|Name=mRNA_P-littoralis_Contig14.145.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=407bp|location=Sequence derived from alignment at P-littoralis_Contig14:632163..632569- (Pylaiella littoralis U1_48)
ACAAGCGAAGACCACGCGGAAAAACATGGAACCTCGGTGACCCCGGCTGA
AAATCGCCCCACCACGAGATCTCGCCCCCCTCCTCCTGGTGGTAATGTGA
TCGGGGCTCCTATCGCTAACGCCTCAACCTCATCCATCCCCTTATCCCCG
TCCCCTGCGTCCCCCGCCGCTACTTGGCGTGCTTCGTCGTGGTCCCTGTT
ATCATATACTTTCGTTGCACCTTCGCCCGCTTGTTTTCCTCGTGTGTACT
TGGTTGAGATTCTTGTGCGTGCACGTCTGTCCTGTCCGTCTGTCTGTCTG
TCTGTCTGTCTTATCCCTCTCTGGAAGGCGCGGTGATGAGGTTGTCAGCC
GTCTGCTGTAGACGGAAGCGAGCAGCCGTTGAGCAGGATGAACCATCTCT
AAGGGGT
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Coding sequence (CDS) from alignment at P-littoralis_Contig14:632163..632569-

>mRNA_P-littoralis_Contig14.145.1 ID=mRNA_P-littoralis_Contig14.145.1|Name=mRNA_P-littoralis_Contig14.145.1|organism=Pylaiella littoralis U1_48|type=CDS|length=336bp|location=Sequence derived from alignment at P-littoralis_Contig14:632163..632569- (Pylaiella littoralis U1_48)
ACAAGCGAAGACCACGCGGAAAAACATGGAACCTCGGTGACCCCGGCTGA
AAATCGCCCCACCACGAGATCTCGCCCCCCTCCTCCTGGTGGTAATGTGA
TCGGGGCTCCTATCGCTAACGCCTCAACCTCATCCATCCCCTTATCCCCG
TCCCCTGCGTCCCCCGCCGCTACTTGGCGTGCTTCGTCGTGGTCCCTGTT
ATCATATACTTTCGTTGCACCTTCGCCCGCTTGTTTTCCTCGTGTGTACT
TGGTTGAGATTCTTGTGCGTGCACGTCTGTCCTGTCCGTCTGTCTGTCTG
TCTGTCTGTCTTATCCCTCTCTGGAAGGCGCGGTGA
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