mRNA_P-littoralis_Contig14.113.3 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig14.113.3
Unique NamemRNA_P-littoralis_Contig14.113.3
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig14.113.3 vs. uniprot
Match: D8LN69_ECTSI (Putative gamma-glutamylcyclotransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LN69_ECTSI)

HSP 1 Score: 142 bits (357), Expect = 3.160e-36
Identity = 75/94 (79.79%), Postives = 81/94 (86.17%), Query Frame = 2 
Query:   68 MEKASPA-ADAAAAAGPDGASSGGEDTPLFVYGTLMNEKVLFALLERVPPTKKACLSGYHRYRIEDHVFPAIRPREGGSVEGLLMTGLDAREKV 346
            ME A+P  A AA+AA P  A    EDTPLFVYGTLMNEKVLFALLERVP T+KA LSGYHR+RI+DHVFPAIRPREGGSVEGLLMTGLDAREK+
Sbjct:    1 MEDAAPVGAAAASAASPSVADGPREDTPLFVYGTLMNEKVLFALLERVPSTRKASLSGYHRFRIKDHVFPAIRPREGGSVEGLLMTGLDAREKL 94
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BLAST of mRNA_P-littoralis_Contig14.113.3 vs. uniprot
Match: A0A836CNX4_9STRA (Putative gamma-glutamylcyclotransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNX4_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 6.960e-13
Identity = 33/66 (50.00%), Postives = 48/66 (72.73%), Query Frame = 2 
Query:  149 LFVYGTLMNEKVLFALLERVPPTKKACLSGYHRYRIEDHVFPAIRPREGGSVEGLLMTGLDAREKV 346
            +FVYGTLM  +V+  LL  +P ++KA L G+HRYRI+D V+PAIRP+E GSV G++    +  E++
Sbjct:   13 VFVYGTLMESRVVTTLLGHMPSSEKAVLPGFHRYRIKDRVYPAIRPKEDGSVSGIVFDVTEREERI 78
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BLAST of mRNA_P-littoralis_Contig14.113.3 vs. uniprot
Match: A0A5J9T8J5_9POAL (Putative gamma-glutamylcyclotransferase n=2 Tax=Eragrostis curvula TaxID=38414 RepID=A0A5J9T8J5_9POAL)

HSP 1 Score: 70.9 bits (172), Expect = 1.290e-10
Identity = 38/87 (43.68%), Postives = 53/87 (60.92%), Query Frame = 2 
Query:  134 GEDTPLFVYGTLMNEKVLFALLERVPPTKKACLSGYHRYRIEDHVFPAIRPREGGSVEGLLMTG--------LDAREKVAGEQRRLE 370
            GE   +FVYG+LM E+V+ A+L+RVPP   A L  YHR+ I++ ++PAI P E   V G ++TG        LDA E V   + R+E
Sbjct:   16 GEPHTVFVYGSLMAEEVVRAILKRVPPAAPATLPNYHRFSIKERIYPAILPVENKKVAGKVITGVTDHELRILDAFEDVEYTRTRVE 102
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BLAST of mRNA_P-littoralis_Contig14.113.3 vs. uniprot
Match: A0A1Y1HQZ7_KLENI (Putative gamma-glutamylcyclotransferase n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HQZ7_KLENI)

HSP 1 Score: 69.3 bits (168), Expect = 4.220e-10
Identity = 36/88 (40.91%), Postives = 52/88 (59.09%), Query Frame = 2 
Query:  125 SSGGEDTPLFVYGTLMNEKVLFALLERVPPTKKACLSGYHRYRIEDHVFPAIRPREGGSVEGLLMTGL-DAREKVAGEQRRLEHGKCM 385
            S  GE   +FVYG+L+ E+V+  L+ R+PP   A L+ YHRY IE   +PAI P+ GG V GL+   L D  + V  E    ++ +C+
Sbjct:    5 SLAGEVKNVFVYGSLLAEEVVRILIGRIPPCAAAYLTDYHRYSIEGRSYPAIAPKNGGRVVGLVYFDLTDHEQAVFDEFESEDYERCL 92
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BLAST of mRNA_P-littoralis_Contig14.113.3 vs. uniprot
Match: A0A8J6BZI0_ZIZPA (GGACT domain-containing protein n=2 Tax=Zizania palustris TaxID=103762 RepID=A0A8J6BZI0_ZIZPA)

HSP 1 Score: 68.9 bits (167), Expect = 7.260e-10
Identity = 41/100 (41.00%), Postives = 60/100 (60.00%), Query Frame = 2 
Query:   77 ASPAADAAAAAGPDGASSGGEDTPLFVYGTLMNEKVLFALLERVPPTKKACLSGYHRYRIEDHVFPAIRPREGGSVEGLLMTGL-DAREKVAGEQRRLEH 373
            A P A A AAA   GA S      +FVYG+LM ++V+ A+++RVPP+  A L  YHR+ I+D ++PAI P E   V G ++ G+ DA   +  E   +E+
Sbjct:    2 APPPAGAPAAAAVGGAHS------VFVYGSLMADEVVSAIIKRVPPSSAALLPNYHRFSIKDRIYPAILPVESKKVAGKVIMGITDAELHILDEFEDVEY 95
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BLAST of mRNA_P-littoralis_Contig14.113.3 vs. uniprot
Match: A0A2I0VKK8_9ASPA (Putative gamma-glutamylcyclotransferase n=3 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0VKK8_9ASPA)

HSP 1 Score: 67.8 bits (164), Expect = 1.270e-9
Identity = 46/135 (34.07%), Postives = 71/135 (52.59%), Query Frame = 2 
Query:  149 LFVYGTLMNEKVLFALLERVPPTKKACLSGYHRYRIEDHVFPAIRPREGGSVEGLLMTGL-DAREKVAGEQRRLEHGKCMRLA*ASPDPRP--AEGQVLTKRFCPRPLVGSWKPDHLKDVLVKGALSIDPAAIAE 544
            +FVYG+L+ ++V+ ALL+R+PP   A L+GYHRY I+  V+PAI P E   V G ++ G+ DA   V       E+ +       + D     AE  V   +  P+ L G W  +  K++ +K  LS+    + E
Sbjct:   23 VFVYGSLLADEVVNALLKRMPPCSPAILNGYHRYSIKGRVYPAILPVESKKVIGRVIKGVTDAELHVLDAFEDEEYKRSTVEVFLNDDSGELFAETYVWADKDDPK-LYGEWDFEEWKELHLKDFLSMTEGFVKE 156
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BLAST of mRNA_P-littoralis_Contig14.113.3 vs. uniprot
Match: A0A8J5BLC4_ZINOF (Putative gamma-glutamylcyclotransferase n=2 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5BLC4_ZINOF)

HSP 1 Score: 68.9 bits (167), Expect = 2.280e-9
Identity = 37/82 (45.12%), Postives = 52/82 (63.41%), Query Frame = 2 
Query:  149 LFVYGTLMNEKVLFALLERVPPTKKACLSGYHRYRIEDHVFPAIRPREGGSVEGLLMTG--------LDAREKVAGEQRRLE 370
            +FVYGTLM+++V+ ALL+ VPP+  A L+ YHRY I+  V+PAI P E   V G ++ G        LDA E +  E+R +E
Sbjct:   13 VFVYGTLMDDQVVQALLKHVPPSSSAVLNHYHRYSIKGRVYPAILPVETKKVTGKVLFGITNVELDVLDAFEDIEYERRVVE 94
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BLAST of mRNA_P-littoralis_Contig14.113.3 vs. uniprot
Match: A0A0A9VPL8_ARUDO (Putative gamma-glutamylcyclotransferase n=1 Tax=Arundo donax TaxID=35708 RepID=A0A0A9VPL8_ARUDO)

HSP 1 Score: 67.4 bits (163), Expect = 2.370e-9
Identity = 35/82 (42.68%), Postives = 51/82 (62.20%), Query Frame = 2 
Query:  149 LFVYGTLMNEKVLFALLERVPPTKKACLSGYHRYRIEDHVFPAIRPREGGSVEGLLMTG--------LDAREKVAGEQRRLE 370
            +FVYG+LM E+V+ A+L+RVPP   A L  +HR+ I+D ++PAI P E   V G+++ G        LDA E V   + R+E
Sbjct:   20 VFVYGSLMAEEVVRAVLKRVPPAAPALLPNHHRFNIKDRIYPAILPVESKKVAGMVIMGVTDEELEVLDAFEDVEYTRARVE 101
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BLAST of mRNA_P-littoralis_Contig14.113.3 vs. uniprot
Match: UPI001F5C8B64 (AIG2-like protein D n=1 Tax=Lolium rigidum TaxID=89674 RepID=UPI001F5C8B64)

HSP 1 Score: 66.6 bits (161), Expect = 3.530e-9
Identity = 30/75 (40.00%), Postives = 49/75 (65.33%), Query Frame = 2 
Query:  122 ASSGGEDTPLFVYGTLMNEKVLFALLERVPPTKKACLSGYHRYRIEDHVFPAIRPREGGSVEGLLMTGLDAREKV 346
            A++ G    +FVYG+LM ++V+ A+L RVP +  A L+ YHR+ ++D ++PAI P E   V G ++TG+   E +
Sbjct:    8 ATAAGGAHSVFVYGSLMADEVVSAILHRVPASSPALLNDYHRFSVKDRIYPAILPVESKKVAGRVITGISDAELI 82
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BLAST of mRNA_P-littoralis_Contig14.113.3 vs. uniprot
Match: I1GWR1_BRADI (Putative gamma-glutamylcyclotransferase n=1 Tax=Brachypodium distachyon TaxID=15368 RepID=I1GWR1_BRADI)

HSP 1 Score: 66.2 bits (160), Expect = 4.170e-9
Identity = 37/98 (37.76%), Postives = 58/98 (59.18%), Query Frame = 2 
Query:  101 AAAGPDGASSGGEDTPLFVYGTLMNEKVLFALLERVPPTKKACLSGYHRYRIEDHVFPAIRPREGGSVEGLLMTG--------LDAREKVAGEQRRLE 370
            AA  P  A++GG  T +FVYG+LM ++V+ A++ RVPP+  A L  +HR+ ++  ++PAI P E   V G ++ G        LDA E     +RR++
Sbjct:    2 AATPPSAAAAGGAHT-VFVYGSLMTDEVVSAIINRVPPSSPALLLDHHRFNVKGRIYPAILPVESKKVAGKVIMGVTDAELILLDAFEDFEYVRRRVQ 98
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig14.113.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LN69_ECTSI3.160e-3679.79Putative gamma-glutamylcyclotransferase n=2 Tax=Ec... [more]
A0A836CNX4_9STRA6.960e-1350.00Putative gamma-glutamylcyclotransferase n=1 Tax=Tr... [more]
A0A5J9T8J5_9POAL1.290e-1043.68Putative gamma-glutamylcyclotransferase n=2 Tax=Er... [more]
A0A1Y1HQZ7_KLENI4.220e-1040.91Putative gamma-glutamylcyclotransferase n=1 Tax=Kl... [more]
A0A8J6BZI0_ZIZPA7.260e-1041.00GGACT domain-containing protein n=2 Tax=Zizania pa... [more]
A0A2I0VKK8_9ASPA1.270e-934.07Putative gamma-glutamylcyclotransferase n=3 Tax=De... [more]
A0A8J5BLC4_ZINOF2.280e-945.12Putative gamma-glutamylcyclotransferase n=2 Tax=Zi... [more]
A0A0A9VPL8_ARUDO2.370e-942.68Putative gamma-glutamylcyclotransferase n=1 Tax=Ar... [more]
UPI001F5C8B643.530e-940.00AIG2-like protein D n=1 Tax=Lolium rigidum TaxID=8... [more]
I1GWR1_BRADI4.170e-937.76Putative gamma-glutamylcyclotransferase n=1 Tax=Br... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig14contigP-littoralis_Contig14:450812..453568 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1488
Hectar predicted targeting categoryother localisation
Exons3
Cds size849
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789646.0614886-CDS-P-littoralis_Contig14:450811..4516601680789646.0614886-CDS-P-littoralis_Contig14:450811..451660Pylaiella littoralis U1_48CDSP-littoralis_Contig14 450812..451660 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789646.0726893-UTR-P-littoralis_Contig14:451660..4519541680789646.0726893-UTR-P-littoralis_Contig14:451660..451954Pylaiella littoralis U1_48UTRP-littoralis_Contig14 451661..451954 -
1680789646.0816648-UTR-P-littoralis_Contig14:452191..4523531680789646.0816648-UTR-P-littoralis_Contig14:452191..452353Pylaiella littoralis U1_48UTRP-littoralis_Contig14 452192..452353 -
1680789646.0916162-UTR-P-littoralis_Contig14:453387..4535681680789646.0916162-UTR-P-littoralis_Contig14:453387..453568Pylaiella littoralis U1_48UTRP-littoralis_Contig14 453388..453568 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig14.113.3prot_P-littoralis_Contig14.113.3Pylaiella littoralis U1_48polypeptideP-littoralis_Contig14 450812..451660 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig14.113.3

>prot_P-littoralis_Contig14.113.3 ID=prot_P-littoralis_Contig14.113.3|Name=mRNA_P-littoralis_Contig14.113.3|organism=Pylaiella littoralis U1_48|type=polypeptide|length=283bp
MSSNNILACNRTENSCGERVVYTRRGVKHSASGGYMRKPCKPSSLDARTK
LNEMFSKGGSERCFHSLASSPDVEAARRRAEHARFYDSPRVHRFFSICSS
LRPCCVPTHPPTYPPTASDFATTNACIQCVYHPIYFGHQSTPFGMMWVLQ
PGSHRRKVTHFHFYFVLLPTPFLLRYLPLVLNVRRFQQALPSLYSRVNRF
NVKLQENTLRENRTCILTASSLTWEPLNHRGMLQSYIFWCGMPVYRFYRR
LLMAAQRFYTLRRLSMVSHVSLIDKFDFFVASR
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mRNA from alignment at P-littoralis_Contig14:450812..453568-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig14.113.3 ID=mRNA_P-littoralis_Contig14.113.3|Name=mRNA_P-littoralis_Contig14.113.3|organism=Pylaiella littoralis U1_48|type=mRNA|length=2757bp|location=Sequence derived from alignment at P-littoralis_Contig14:450812..453568- (Pylaiella littoralis U1_48)
GAGGAAGCTGAGTACCTCCGGCCCCACCTATTCCGAATACTTTGATAGTG
GGAGGGCCTTTCGCGCGATGGAGAAGGCAAGCCCTGCTGCTGACGCTGCT
GCTGCTGCTGGCCCGGATGGTGCCTCCAGCGGCGGAGAGGACACACCGCT
GTTCGTCTACGGCACTTTGATGAACGAAAAGGTGGAATGATTGATGGGTC
TTGATTGATGGTTCTTAAAAGCACTCGAAACAGCCATCTCAAAGACCGCG
CTCTCATGTGTTTCATATCACTAGCCACGCGAAAACCACCGCGCTGCTGC
GCAAATCAATTCTCGGTAGCTCGTGCATCATGAGGTTGTCTCATGCCGCC
CCACCAATTGAAGAGAGCTCGCCGGTACAGTAGTTAATTTCCGTCGGTTT
CCTGTTGGAAAATACGAAGTCATCATACAGGCCAGCAGCAGTAGCAGCGG
ACGCGCGCAAACGTCGTTTGTCGTTCATTCTATAATAGGCACAAGCGTCT
ATAGAAAAAAGAGTTGATATCCGCAACGGTTATGCTACTGCAGTATCCTC
TTTTTTTCTTCAAATTTCGACCATCGCGAGGCTCTAAAGCCTATCACAGA
CTTTCTCCGCTCCGCCTGCCTTTGTTCCTGCAAGTGACGTAGTATAGCAC
ACCCCCTCCTCCCTCCGGGCCAATTGTCAATAAGCTGGAGATTTCTCCCG
GCCAGGAAGATCGTAAAACAGCCTGATAACTTAGGGGAGCTGCAACGGCG
GCGCATTGTCTATTGAGTCACAGACACACAGTTACGTAGATAGACACACA
GGTACATAGATGCTTATTTTTCTTTTGTATTTCGTTGCTCATCTAATCCA
CGTCCTCGTCTGGAGAGACGCGAATGTATCATTGATGTGTTTTTGATGTG
TTTGTACTACGTACTGTACGGAGAGACAACGAATGACAACCACACAAGAG
GTTGGGACAAGTTGGAGCGTCTTTCAAGGGCGTTCCTAAAATCCGAGAAT
CTGTCCGTTGGTCGGCTCTGAAGTGGTGCTCCCTTTGTTGCAGAGAAACC
GAGCTCTGAGAAAAAATAAGGGTGGGTGTGTTCACGTGACATCATATCAT
ACCACTTGCGACAGCAGCCAGCATGTATATAGCAGACTTCATTCGTAATA
AATATAACATGATGACCGTCAGTCACCCCGAAAGTTTAAAGTTGTGTGAC
ACGCATGCACCACAGGTATTGTTCGCTCTTCTCGAGAGAGTTCCACCGAC
GAAAAAGGCGTGCTTGTCGGGGTACCACCGGTACCGGATAGAGGACCATG
TCTTCCCGGCCATCCGACCAAGAGAAGGGGGCTCCGTGGAGGGTTTGCTC
ATGACAGGGCTCGACGCACGAGAAAAGGTGCATACGTGATATAAGTATGA
TTGTCAGACATGCGATGATACGTGTGTTTGATAAAGTCGGAAGTTAAGTT
TTGTCTACCGGTACAGTGGTACACAAGCGCACAAACTCAATTCCTGAAAA
AAAGTTGAGGAACGCAGGCTTCTGCTTCAGGATTGATTTTGGTATATGTT
TATCTTTTATCACGTTGTAATGTGTGTATGCCCCCGGGTCGCGTCGCGCA
TGCCAACTGTATAGGTAGCGGGAGAGCAGCGCAGGTTGGAGCACGGAAAA
TGTATGAGGTTAGCGTAAGCGTCACCGGATCCCAGGCCAGCAGAGGGGCA
GGTGCTTACGAAGCGGTTTTGCCCTCGCCCCCTCGTCGGGTCCTGGAAAC
CTGACCATTTGAAAGATGTGCTCGTGAAAGGTGCGCTTTCAATTGATCCC
GCAGCCATAGCGGAATGAATCTTCCGCACGACCATCAACCGCAGTCGGTC
GTTGCTTCTCTTCGATGCTCCATGAAATCATCCCATCTAGCTACTTCGGC
TGTGTGTGATGTCATCAAATAATATCTTAGCATGCAACCGTACGGAAAAT
AGCTGTGGCGAACGAGTTGTCTATACACGACGGGGGGTAAAACACAGCGC
GAGTGGCGGTTATATGCGAAAGCCGTGCAAGCCCAGTTCTTTAGATGCGC
GAACGAAGCTGAACGAGATGTTTTCCAAAGGTGGATCGGAGCGGTGTTTT
CATAGTCTAGCGTCGAGTCCGGACGTGGAGGCTGCACGACGGCGTGCCGA
ACACGCAAGGTTTTACGACAGCCCCCGGGTCCACCGTTTTTTTTCGATTT
GTTCGTCTCTCCGGCCCTGCTGTGTGCCGACCCACCCACCCACCTACCCA
CCCACCGCGTCTGATTTTGCCACTACCAATGCTTGCATACAGTGTGTATA
TCATCCTATTTATTTTGGGCACCAGTCTACACCTTTCGGTATGATGTGGG
TGCTTCAGCCGGGGTCACACAGGAGGAAGGTCACACACTTTCATTTTTAT
TTTGTTTTATTGCCCACACCTTTCCTCCTGCGGTACTTGCCTTTGGTTTT
GAATGTGAGACGGTTTCAGCAAGCCCTTCCCTCTCTTTACTCACGAGTGA
ATCGCTTCAATGTTAAGTTGCAAGAAAACACTCTCAGAGAGAATCGAACC
TGCATCCTTACTGCTAGTAGCTTGACGTGGGAACCACTGAACCACCGGGG
AATGTTACAGTCCTATATTTTTTGGTGTGGGATGCCCGTCTACCGCTTCT
ACCGCCGTCTCCTCATGGCGGCTCAACGATTCTATACGCTACGCCGGTTG
TCCATGGTGTCTCACGTGTCATTGATTGACAAATTTGATTTTTTTGTCGC
TTCTCGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig14:450812..453568-

>mRNA_P-littoralis_Contig14.113.3 ID=mRNA_P-littoralis_Contig14.113.3|Name=mRNA_P-littoralis_Contig14.113.3|organism=Pylaiella littoralis U1_48|type=CDS|length=849bp|location=Sequence derived from alignment at P-littoralis_Contig14:450812..453568- (Pylaiella littoralis U1_48)
ATGTCATCAAATAATATCTTAGCATGCAACCGTACGGAAAATAGCTGTGG
CGAACGAGTTGTCTATACACGACGGGGGGTAAAACACAGCGCGAGTGGCG
GTTATATGCGAAAGCCGTGCAAGCCCAGTTCTTTAGATGCGCGAACGAAG
CTGAACGAGATGTTTTCCAAAGGTGGATCGGAGCGGTGTTTTCATAGTCT
AGCGTCGAGTCCGGACGTGGAGGCTGCACGACGGCGTGCCGAACACGCAA
GGTTTTACGACAGCCCCCGGGTCCACCGTTTTTTTTCGATTTGTTCGTCT
CTCCGGCCCTGCTGTGTGCCGACCCACCCACCCACCTACCCACCCACCGC
GTCTGATTTTGCCACTACCAATGCTTGCATACAGTGTGTATATCATCCTA
TTTATTTTGGGCACCAGTCTACACCTTTCGGTATGATGTGGGTGCTTCAG
CCGGGGTCACACAGGAGGAAGGTCACACACTTTCATTTTTATTTTGTTTT
ATTGCCCACACCTTTCCTCCTGCGGTACTTGCCTTTGGTTTTGAATGTGA
GACGGTTTCAGCAAGCCCTTCCCTCTCTTTACTCACGAGTGAATCGCTTC
AATGTTAAGTTGCAAGAAAACACTCTCAGAGAGAATCGAACCTGCATCCT
TACTGCTAGTAGCTTGACGTGGGAACCACTGAACCACCGGGGAATGTTAC
AGTCCTATATTTTTTGGTGTGGGATGCCCGTCTACCGCTTCTACCGCCGT
CTCCTCATGGCGGCTCAACGATTCTATACGCTACGCCGGTTGTCCATGGT
GTCTCACGTGTCATTGATTGACAAATTTGATTTTTTTGTCGCTTCTCGC
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