mRNA_P-littoralis_Contig14.79.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig14.79.1
Unique NamemRNA_P-littoralis_Contig14.79.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig14.79.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig14contigP-littoralis_Contig14:354531..355093 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size563
Hectar predicted targeting categorysignal peptide
Exons1
Cds size381
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789646.0067368-UTR-P-littoralis_Contig14:354530..3545631680789646.0067368-UTR-P-littoralis_Contig14:354530..354563Pylaiella littoralis U1_48UTRP-littoralis_Contig14 354531..354563 -
1680789646.0328004-UTR-P-littoralis_Contig14:354944..3550931680789646.0328004-UTR-P-littoralis_Contig14:354944..355093Pylaiella littoralis U1_48UTRP-littoralis_Contig14 354945..355093 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789646.0225701-CDS-P-littoralis_Contig14:354563..3549441680789646.0225701-CDS-P-littoralis_Contig14:354563..354944Pylaiella littoralis U1_48CDSP-littoralis_Contig14 354564..354944 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig14.79.1prot_P-littoralis_Contig14.79.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig14 354564..354944 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig14.79.1

>prot_P-littoralis_Contig14.79.1 ID=prot_P-littoralis_Contig14.79.1|Name=mRNA_P-littoralis_Contig14.79.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=127bp
MPLLCVGWLLSFFQVLSAIEQKSPLGRIDTRGVERKVLTIREPFYPSGFC
AHAARRRTSDKILRGKFFCVVYKEPIPASRDGIDFLTISRLFDKQHCSRF
FFFRIRLSTAGCHGGCPYYRGTKTYE*
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mRNA from alignment at P-littoralis_Contig14:354531..355093-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig14.79.1 ID=mRNA_P-littoralis_Contig14.79.1|Name=mRNA_P-littoralis_Contig14.79.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=563bp|location=Sequence derived from alignment at P-littoralis_Contig14:354531..355093- (Pylaiella littoralis U1_48)
ATGAGGATGTTTCGGCCTCTTCACGTCGAGCACCAGCGCCTTCATGGCGA
GCACCAGCGCCAGCACGGCTACTACTACTGGGGGTGAGACCACCACCGTC
TTAACATCGAAGGAGGAGCCTGGCTCCATTTCTGTAGCTTGTACTTAAGA
TGCCATTACTGTGCGTAGGTTGGTTGCTCTCCTTCTTTCAGGTATTATCT
GCAATTGAGCAAAAGTCTCCCCTCGGAAGAATCGATACGAGGGGCGTAGA
ACGGAAGGTCTTGACGATACGTGAACCGTTCTACCCGTCAGGCTTTTGCG
CTCATGCAGCACGACGAAGGACCAGCGACAAAATATTGCGTGGAAAGTTT
TTTTGCGTTGTTTACAAGGAACCGATCCCCGCGTCGAGGGATGGAATAGA
CTTTTTGACAATCAGCAGACTTTTTGACAAACAGCATTGCTCTCGTTTCT
TTTTTTTTCGCATACGTCTCTCGACAGCAGGGTGTCACGGGGGCTGCCCC
TACTACAGGGGCACGAAAACCTACGAATAAGCGTATCGCAGGGATGCATG
TGCATCAACGTTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig14:354531..355093-

>mRNA_P-littoralis_Contig14.79.1 ID=mRNA_P-littoralis_Contig14.79.1|Name=mRNA_P-littoralis_Contig14.79.1|organism=Pylaiella littoralis U1_48|type=CDS|length=381bp|location=Sequence derived from alignment at P-littoralis_Contig14:354531..355093- (Pylaiella littoralis U1_48)
ATGCCATTACTGTGCGTAGGTTGGTTGCTCTCCTTCTTTCAGGTATTATC
TGCAATTGAGCAAAAGTCTCCCCTCGGAAGAATCGATACGAGGGGCGTAG
AACGGAAGGTCTTGACGATACGTGAACCGTTCTACCCGTCAGGCTTTTGC
GCTCATGCAGCACGACGAAGGACCAGCGACAAAATATTGCGTGGAAAGTT
TTTTTGCGTTGTTTACAAGGAACCGATCCCCGCGTCGAGGGATGGAATAG
ACTTTTTGACAATCAGCAGACTTTTTGACAAACAGCATTGCTCTCGTTTC
TTTTTTTTTCGCATACGTCTCTCGACAGCAGGGTGTCACGGGGGCTGCCC
CTACTACAGGGGCACGAAAACCTACGAATAA
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