mRNA_P-littoralis_Contig1399.13.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1399.13.1
Unique NamemRNA_P-littoralis_Contig1399.13.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1399.13.1 vs. uniprot
Match: D7G8Q1_ECTSI (Uncharacterized protein n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8Q1_ECTSI)

HSP 1 Score: 179 bits (455), Expect = 1.440e-54
Identity = 113/138 (81.88%), Postives = 116/138 (84.06%), Query Frame = 1 
Query:   22 MTSLNAMSEGDEEEGGGDHDAREATDRIPAADEIRAVQDEIRGVERKIEDAEEETAEVVKKIDDIEAAIAGGSRYLGMTDPEALLKQLGRKEEQLRRKEGKEXXXXXXXXXXXXXXXX--KEDRLSRIEQLRANNAPA 429
            MTSL+AMSEGDEEEGGGDHDAREA DRIPAADEIRAVQD+IRGVERK EDAE+ETAEVVKKIDDIEAAIAGGSRYLGMTDPEALLKQLGRKEEQ        XXXXXXX           KEDR SRIEQLRANNAPA
Sbjct:    1 MTSLSAMSEGDEEEGGGDHDAREAADRIPAADEIRAVQDDIRGVERKXEDAEKETAEVVKKIDDIEAAIAGGSRYLGMTDPEALLKQLGRKEEQXXXXXXXXXXXXXXXRELLLNELLLKKEDRFSRIEQLRANNAPA 138
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BLAST of mRNA_P-littoralis_Contig1399.13.1 vs. uniprot
Match: D8LPP1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPP1_ECTSI)

HSP 1 Score: 173 bits (438), Expect = 9.330e-53
Identity = 122/154 (79.22%), Postives = 127/154 (82.47%), Query Frame = 1 
Query:    1 IFYLMRGMTSLNAMSEGDEEEGGGDHDAREATDRIPAADEIRAVQDEIRGVERKIEDAEEETAEVVKKIDDIEAAIAGGSRYLGMTDPEALLKQLGRKEEQLRRKEGKEXXXXXXXXXXXXXXXXK-----------EDRLSRIEQLRANNAPA 429
            +FY +RGMT L+AMSEGDEEEGGGDH AREA DR+PAADEIRAVQDEIRGVERKIEDAEEETAEVVKKIDDIEAAIAGG+RYLGMTDPEALLKQL    EQLRR     XXXXXXXXXXXXXXXX            EDRLSR EQ RANNAPA
Sbjct:    1 MFYPVRGMTGLSAMSEGDEEEGGGDHHAREAADRLPAADEIRAVQDEIRGVERKIEDAEEETAEVVKKIDDIEAAIAGGARYLGMTDPEALLKQL----EQLRRXXXXXXXXXXXXXXXXXXXXXXXXXXXELLLKTEDRLSRSEQFRANNAPA 150
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BLAST of mRNA_P-littoralis_Contig1399.13.1 vs. uniprot
Match: D7G515_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G515_ECTSI)

HSP 1 Score: 165 bits (417), Expect = 1.090e-49
Identity = 114/144 (79.17%), Postives = 116/144 (80.56%), Query Frame = 1 
Query:   22 MTSLNAMSEGDEEEGGGDHDAREATDRIPAADEIRAVQDEIRGVERKIED-------AEEETAEVVKKIDDIEAAIAGGSRYLGMTDPEALLKQLGRKEEQLRRKEGKEXXXXXXXXXXXXXXXXKEDRLSRIEQLRANNAPAG 432
            MTS +AMSEGDEEEGGGDHDAREA D  PAADEIRAVQ                   AEEETAEVVKKID IEAAIAGGS+YLGMTDPEALLKQLGRKEEQLRRKEGKEXXXXXXXXXXXX    KEDRLSRIEQLRANNAPAG
Sbjct:    1 MTSSSAMSEGDEEEGGGDHDAREAADGSPAADEIRAVQXXXXXXXXXXXXXXXXXXXAEEETAEVVKKIDYIEAAIAGGSKYLGMTDPEALLKQLGRKEEQLRRKEGKEXXXXXXXXXXXXILLKKEDRLSRIEQLRANNAPAG 144
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BLAST of mRNA_P-littoralis_Contig1399.13.1 vs. uniprot
Match: D7FM56_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM56_ECTSI)

HSP 1 Score: 111 bits (278), Expect = 4.210e-28
Identity = 68/102 (66.67%), Postives = 70/102 (68.63%), Query Frame = 1 
Query:    4 FYLMRGMTSLNAMSEGDEEEGGGDHDAREATDRIPAADEIRAVQDEIRGVERKIEDAEEETAEVVKKIDDIEAAIAGGSRYLGMTDPEALLKQLGRKEEQLR 309
            FY + GMTSL+AMSEG EEEGGGDH AREA D  PAADEIRAVQ                        D IEAAIAGGSRYLGMTDPEALLKQLGRKEEQLR
Sbjct:   70 FYPVPGMTSLSAMSEGGEEEGGGDHHAREAADGSPAADEIRAVQXXXXXXXXXXXXXXXXXXXXXXXTDGIEAAIAGGSRYLGMTDPEALLKQLGRKEEQLR 171
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BLAST of mRNA_P-littoralis_Contig1399.13.1 vs. uniprot
Match: D7G3Q8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3Q8_ECTSI)

HSP 1 Score: 100 bits (248), Expect = 4.420e-24
Identity = 85/143 (59.44%), Postives = 93/143 (65.03%), Query Frame = 1 
Query:    7 YLMRGMTSLNAMSEGDEEEGGGDHDAREATDRIPAADEIRAVQDEIRGVERKIEDAEEETAEVVKKIDDIEAA-IAGGSRYLGMTDPEALLKQLGRKEEQLRRKEGKEXXXXXXXXXXXXXXXXKEDRLSRIEQLRANNAPAG 432
            Y +RG+TSL+A+SEG+EE+GGGDHD REA    PAADEIRAVQ                      KIDD+EAA IAGGS YLGMTDPEALLK+   KE    R     XXXXXXXXXXXX    KE RL  IEQ RANNAPAG
Sbjct:    3 YPVRGITSLSALSEGNEEDGGGDHDTREAAGGSPAADEIRAVQXXXXXXXXXXXXXXXXXXXXXXKIDDVEAATIAGGSGYLGMTDPEALLKE---KE----RLGXXXXXXXXXXXXXXXQVLVKEKRLFSIEQRRANNAPAG 138
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1399.13.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G8Q1_ECTSI1.440e-5481.88Uncharacterized protein n=3 Tax=Ectocarpus silicul... [more]
D8LPP1_ECTSI9.330e-5379.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G515_ECTSI1.090e-4979.17Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FM56_ECTSI4.210e-2866.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G3Q8_ECTSI4.420e-2459.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1399contigP-littoralis_Contig1399:20605..21036 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size432
Hectar predicted targeting categoryother localisation
Exons1
Cds size420
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789645.2621553-UTR-P-littoralis_Contig1399:20604..206161680789645.2621553-UTR-P-littoralis_Contig1399:20604..20616Pylaiella littoralis U1_48UTRP-littoralis_Contig1399 20605..20616 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789645.2714062-CDS-P-littoralis_Contig1399:20616..210361680789645.2714062-CDS-P-littoralis_Contig1399:20616..21036Pylaiella littoralis U1_48CDSP-littoralis_Contig1399 20617..21036 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1399.13.1prot_P-littoralis_Contig1399.13.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1399 20617..21036 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1399.13.1

>prot_P-littoralis_Contig1399.13.1 ID=prot_P-littoralis_Contig1399.13.1|Name=mRNA_P-littoralis_Contig1399.13.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=140bp
MRGMTSLNAMSEGDEEEGGGDHDAREATDRIPAADEIRAVQDEIRGVERK
IEDAEEETAEVVKKIDDIEAAIAGGSRYLGMTDPEALLKQLGRKEEQLRR
KEGKEEQLRRKEEQLRELLLKKEDRLSRIEQLRANNAPAG
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mRNA from alignment at P-littoralis_Contig1399:20605..21036+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1399.13.1 ID=mRNA_P-littoralis_Contig1399.13.1|Name=mRNA_P-littoralis_Contig1399.13.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=432bp|location=Sequence derived from alignment at P-littoralis_Contig1399:20605..21036+ (Pylaiella littoralis U1_48)
ATTTTTTACCTGATGCGAGGGATGACGAGCTTGAACGCGATGAGCGAGGG
CGACGAGGAGGAGGGGGGCGGCGATCATGATGCGCGAGAAGCTACCGATC
GCATTCCGGCGGCGGACGAGATCCGTGCGGTCCAGGATGAGATCCGTGGT
GTAGAGCGCAAGATCGAGGATGCAGAGGAGGAGACGGCAGAGGTTGTCAA
GAAGATTGATGATATTGAGGCTGCTATTGCTGGGGGCTCCAGGTACCTCG
GAATGACCGACCCCGAAGCCCTCTTGAAGCAACTAGGCAGGAAGGAGGAG
CAGCTACGCAGGAAGGAGGGGAAGGAGGAGCAGCTACGCAGGAAGGAGGA
GCAACTCCGCGAGCTCCTTTTGAAGAAGGAGGACCGGCTCTCCAGGATTG
AGCAGCTCCGTGCCAACAACGCCCCCGCAGGT
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Coding sequence (CDS) from alignment at P-littoralis_Contig1399:20605..21036+

>mRNA_P-littoralis_Contig1399.13.1 ID=mRNA_P-littoralis_Contig1399.13.1|Name=mRNA_P-littoralis_Contig1399.13.1|organism=Pylaiella littoralis U1_48|type=CDS|length=420bp|location=Sequence derived from alignment at P-littoralis_Contig1399:20605..21036+ (Pylaiella littoralis U1_48)
ATGCGAGGGATGACGAGCTTGAACGCGATGAGCGAGGGCGACGAGGAGGA
GGGGGGCGGCGATCATGATGCGCGAGAAGCTACCGATCGCATTCCGGCGG
CGGACGAGATCCGTGCGGTCCAGGATGAGATCCGTGGTGTAGAGCGCAAG
ATCGAGGATGCAGAGGAGGAGACGGCAGAGGTTGTCAAGAAGATTGATGA
TATTGAGGCTGCTATTGCTGGGGGCTCCAGGTACCTCGGAATGACCGACC
CCGAAGCCCTCTTGAAGCAACTAGGCAGGAAGGAGGAGCAGCTACGCAGG
AAGGAGGGGAAGGAGGAGCAGCTACGCAGGAAGGAGGAGCAACTCCGCGA
GCTCCTTTTGAAGAAGGAGGACCGGCTCTCCAGGATTGAGCAGCTCCGTG
CCAACAACGCCCCCGCAGGT
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