mRNA_P-littoralis_Contig1399.10.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1399.10.1
Unique NamemRNA_P-littoralis_Contig1399.10.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1399.10.1 vs. uniprot
Match: D8LJ25_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ25_ECTSI)

HSP 1 Score: 74.3 bits (181), Expect = 6.750e-17
Identity = 37/41 (90.24%), Postives = 38/41 (92.68%), Query Frame = 1 
Query:    1 MLPLLKRRAAKPRVLLAAMSRYNEKQDGAFLGYLPDKNAGV 123
            MLPLLK RAAKPRVLLAAMSRYN KQDG FLGYLP+KNAGV
Sbjct:    1 MLPLLKLRAAKPRVLLAAMSRYNNKQDGPFLGYLPEKNAGV 41
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BLAST of mRNA_P-littoralis_Contig1399.10.1 vs. uniprot
Match: A0A6H5K1W5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1W5_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 9.910e-17
Identity = 40/41 (97.56%), Postives = 40/41 (97.56%), Query Frame = 1 
Query:    1 MLPLLKRRAAKPRVLLAAMSRYNEKQDGAFLGYLPDKNAGV 123
            MLPLLKRRAAKPRVLLAAMSRYNEKQDG FLGYLPDKNAGV
Sbjct:  781 MLPLLKRRAAKPRVLLAAMSRYNEKQDGTFLGYLPDKNAGV 821
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BLAST of mRNA_P-littoralis_Contig1399.10.1 vs. uniprot
Match: A0A6H5L5L0_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5L0_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 1.060e-14
Identity = 36/41 (87.80%), Postives = 40/41 (97.56%), Query Frame = 1 
Query:    1 MLPLLKRRAAKPRVLLAAMSRYNEKQDGAFLGYLPDKNAGV 123
            M+PLLKRRAAKPRVLLAA+SRYNEKQDGAFLGYLP+K+ GV
Sbjct:  445 MVPLLKRRAAKPRVLLAALSRYNEKQDGAFLGYLPEKSTGV 485
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BLAST of mRNA_P-littoralis_Contig1399.10.1 vs. uniprot
Match: A0A6H5JL58_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL58_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 7.490e-12
Identity = 34/41 (82.93%), Postives = 36/41 (87.80%), Query Frame = 1 
Query:    1 MLPLLKRRAAKPRVLLAAMSRYNEKQDGAFLGYLPDKNAGV 123
            M+PLLKRRAA  RVLLAAMSRYN KQDGAFLGYLP+KN  V
Sbjct:  812 MVPLLKRRAATLRVLLAAMSRYNNKQDGAFLGYLPEKNVRV 852
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BLAST of mRNA_P-littoralis_Contig1399.10.1 vs. uniprot
Match: A0A6H5JHQ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHQ8_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 2.340e-10
Identity = 36/52 (69.23%), Postives = 36/52 (69.23%), Query Frame = 1 
Query:    1 MLPLLKRRAAKPRVLLAAMSRYNEKQDGAFLGY-----------LPDKNAGV 123
            MLPLLKRRAAKPRVLLAAMSRYN K DGAFLG            LP KNAG 
Sbjct:  391 MLPLLKRRAAKPRVLLAAMSRYNNKHDGAFLGXXXXXXXXXXXXLPGKNAGA 442
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BLAST of mRNA_P-littoralis_Contig1399.10.1 vs. uniprot
Match: D7G2C8_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2C8_ECTSI)

HSP 1 Score: 60.1 bits (144), Expect = 6.660e-10
Identity = 30/37 (81.08%), Postives = 31/37 (83.78%), Query Frame = 1 
Query:    4 LPLLKRRAAKPRVLLAAMSRYNEKQDGAFLGYLPDKN 114
            LP LKRRA KP VLLAA+SRYN KQDG FLGY PDKN
Sbjct:  150 LPGLKRRATKPCVLLAALSRYNNKQDGPFLGYSPDKN 186
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BLAST of mRNA_P-littoralis_Contig1399.10.1 vs. uniprot
Match: A0A6H5JNS0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNS0_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 8.090e-10
Identity = 30/40 (75.00%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:    1 MLPLLKRRAAKPRVLLAAMSRYNEKQDGAFLGYLPDKNAG 120
            MLP LKRRA KPRV LA +SRYN KQDG FLGY P KN G
Sbjct:  364 MLPGLKRRATKPRVALAPLSRYNNKQDGPFLGYTPSKNGG 403
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BLAST of mRNA_P-littoralis_Contig1399.10.1 vs. uniprot
Match: D8LPN9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPN9_ECTSI)

HSP 1 Score: 47.0 bits (110), Expect = 5.520e-6
Identity = 24/40 (60.00%), Postives = 30/40 (75.00%), Query Frame = 1 
Query:    1 MLPLLKRRAAKPRVLLAAMSRYNEKQDGAFLGYLPDKNAG 120
            MLP+LKRR  KPR LLAA+SRY +KQD +F G+ P  + G
Sbjct:    1 MLPVLKRRVTKPRALLAALSRYIDKQDRSFTGF-PGNHVG 39
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1399.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D8LJ25_ECTSI6.750e-1790.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K1W5_9PHAE9.910e-1797.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L5L0_9PHAE1.060e-1487.80Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JL58_9PHAE7.490e-1282.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHQ8_9PHAE2.340e-1069.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2C8_ECTSI6.660e-1081.08EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5JNS0_9PHAE8.090e-1075.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LPN9_ECTSI5.520e-660.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1399contigP-littoralis_Contig1399:13875..14100 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G2C8
PFAMsPkinase,Pkinase_Tyr
Model size126
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Evalue1.09e-10
EggNOG OGsCOG0515@1|root,KOG0192@2759|Eukaryota
Descriptionprotein kinase activity
Cds size126
COG categoryKLT
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789645.1297238-CDS-P-littoralis_Contig1399:13874..139381680789645.1297238-CDS-P-littoralis_Contig1399:13874..13938Pylaiella littoralis U1_48CDSP-littoralis_Contig1399 13875..13938 -
1680789645.1403813-CDS-P-littoralis_Contig1399:14038..141001680789645.1403813-CDS-P-littoralis_Contig1399:14038..14100Pylaiella littoralis U1_48CDSP-littoralis_Contig1399 14039..14100 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1399.10.1prot_P-littoralis_Contig1399.10.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1399 13875..14100 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1399.10.1

>prot_P-littoralis_Contig1399.10.1 ID=prot_P-littoralis_Contig1399.10.1|Name=mRNA_P-littoralis_Contig1399.10.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=42bp
MLPLLKRRAAKPRVLLAAMSRYNEKQDGAFLGYLPDKNAGV*
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mRNA from alignment at P-littoralis_Contig1399:13875..14100-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1399.10.1 ID=mRNA_P-littoralis_Contig1399.10.1|Name=mRNA_P-littoralis_Contig1399.10.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=226bp|location=Sequence derived from alignment at P-littoralis_Contig1399:13875..14100- (Pylaiella littoralis U1_48)
ATGCTCCCGCTTCTGAAGCGGAGGGCGGCGAAGCCTCGTGTGCTCTTGGC
AGCCATGTCTAGGTGCGTGGTGTTGTTTGATTCTTCAGGCGTGTGTCGTG
GCCAATAAAGAATTTGAAATAAGTTGGCTGATGCTTTTACCCGCCCCGCT
TGTTTTCGACAGGTACAACGAGAAGCAGGACGGAGCTTTCCTCGGGTACC
TCCCCGATAAAAACGCGGGAGTCTAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1399:13875..14100-

>mRNA_P-littoralis_Contig1399.10.1 ID=mRNA_P-littoralis_Contig1399.10.1|Name=mRNA_P-littoralis_Contig1399.10.1|organism=Pylaiella littoralis U1_48|type=CDS|length=126bp|location=Sequence derived from alignment at P-littoralis_Contig1399:13875..14100- (Pylaiella littoralis U1_48)
ATGCTCCCGCTTCTGAAGCGGAGGGCGGCGAAGCCTCGTGTGCTCTTGGC
AGCCATGTCTAGGTACAACGAGAAGCAGGACGGAGCTTTCCTCGGGTACC
TCCCCGATAAAAACGCGGGAGTCTAA
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