mRNA_P-littoralis_Contig1398.15.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1398.15.1
Unique NamemRNA_P-littoralis_Contig1398.15.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1398.15.1 vs. uniprot
Match: A0A6H5LCY2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCY2_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 1.340e-10
Identity = 33/64 (51.56%), Postives = 49/64 (76.56%), Query Frame = 3 
Query:    6 MSPSAERMVAAGFNRVSSSVVETLLIDDVVWYRAVIAAIQQAHTGQN-LTEKQLQNKVKQEYSN 194
            M  + ERMVAAG NR+SS+VV+TLL+D+VVWYR+VI A+Q+ H G   +T  Q+   +K++++N
Sbjct:  126 MPQATERMVAAGCNRISSNVVKTLLVDEVVWYRSVIHALQEQHQGSTAMTNDQILKAIKKDFAN 189
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1398.15.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5LCY2_9PHAE1.340e-1051.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1398contigP-littoralis_Contig1398:21153..22068 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size198
Hectar predicted targeting categoryother localisation
Exons2
Cds size198
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789644.909877-CDS-P-littoralis_Contig1398:21152..211911680789644.909877-CDS-P-littoralis_Contig1398:21152..21191Pylaiella littoralis U1_48CDSP-littoralis_Contig1398 21153..21191 +
1680789644.9207969-CDS-P-littoralis_Contig1398:21909..220681680789644.9207969-CDS-P-littoralis_Contig1398:21909..22068Pylaiella littoralis U1_48CDSP-littoralis_Contig1398 21910..22068 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1398.15.1prot_P-littoralis_Contig1398.15.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1398 21153..22068 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1398.15.1

>prot_P-littoralis_Contig1398.15.1 ID=prot_P-littoralis_Contig1398.15.1|Name=mRNA_P-littoralis_Contig1398.15.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=66bp
ESCHLPRSAWSQQGSTGSLRVSWRLCSLTTSSGIELLLLRFSKPIPAKTS
QKNSFRTRSSRNIAT*
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mRNA from alignment at P-littoralis_Contig1398:21153..22068+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1398.15.1 ID=mRNA_P-littoralis_Contig1398.15.1|Name=mRNA_P-littoralis_Contig1398.15.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=916bp|location=Sequence derived from alignment at P-littoralis_Contig1398:21153..22068+ (Pylaiella littoralis U1_48)
GAGTCATGTCACCTTCCGCGGAGCGCATGGTCGCAGCAGGTGAAGCGTTC
TGCAAATGTGCTGTCATGTTATCTACCATTCATTGCAGATGCCAACCTAC
ACCGTCGAGTACATGCGTGCTTGGGTTGACTTTGTGTGGCAAACGAAATC
CGTTCTCCTCTTTTTGCTCCGAGTTCGTTCTGAAATTTTCCGATGCAGTA
CGTGCATATCTCCAGATAGATGAGGATCTATCATACTGTAGATCACTGGC
GGCGTACATACGATAGCACACAAATGATGCTGGCCCTTTATTCGAAGTAT
ACACACCTACGGGTTGTGTCCCGTCTCACAGTCATCTGTCTGTCTGTAAG
TATTTGTCCGACTCGTCAGATATACACCGTTCGTTGTTGTGCCCACAAGA
TAATGTTTTGACACACAACGTCGCGGCCGAAGTTTTGTGATACTTCGTAC
AACACGAAATTTTCCAGTCAGACCCTGTTGTTGTGTTGTTTCCTGAATAC
GTAGTACAAGCCAAAAATCACGAAGTACAACATTAGAACCCGCTGCCAAA
GAACAGGCCCATCCAGCATGCCTCCGATGAGAGATGTTTGGTTGCTTGAT
TCTCACATTAGCTCATCGAAATGTGCTCCTGCCGGAAGCTACCCTAATTT
TTGTATTACGATAGTGATATTTCTGCTCTTCCCAAAACTTTCACTCTGTG
TCTGACAGACATCATATGTTTGATACTTGCCTCTGTTGTTGCTATTGTGT
TGCCCAGGGTTCAACAGGGTCTCTTCGAGTGTCGTGGAGACTTTGCTCAT
TGACGACGTCGTCTGGTATAGAGCTGTTATTGCTGCGATTCAGCAAGCCC
ATACCGGCCAAAACCTCACAGAAAAACAGCTTCAGAACAAGGTCAAGCAG
GAATATAGCAACGTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1398:21153..22068+

>mRNA_P-littoralis_Contig1398.15.1 ID=mRNA_P-littoralis_Contig1398.15.1|Name=mRNA_P-littoralis_Contig1398.15.1|organism=Pylaiella littoralis U1_48|type=CDS|length=198bp|location=Sequence derived from alignment at P-littoralis_Contig1398:21153..22068+ (Pylaiella littoralis U1_48)
GAGTCATGTCACCTTCCGCGGAGCGCATGGTCGCAGCAGGGTTCAACAGG
GTCTCTTCGAGTGTCGTGGAGACTTTGCTCATTGACGACGTCGTCTGGTA
TAGAGCTGTTATTGCTGCGATTCAGCAAGCCCATACCGGCCAAAACCTCA
CAGAAAAACAGCTTCAGAACAAGGTCAAGCAGGAATATAGCAACGTGA
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