mRNA_P-littoralis_Contig1397.2.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1397.2.1
Unique NamemRNA_P-littoralis_Contig1397.2.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1397.2.1 vs. uniprot
Match: A0A0L0FQP7_9EUKA (EGF-like domain-containing protein (Fragment) n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FQP7_9EUKA)

HSP 1 Score: 59.3 bits (142), Expect = 4.010e-7
Identity = 24/51 (47.06%), Postives = 32/51 (62.75%), Query Frame = 1 
Query:  475 SKTCP-TCGNGGVCNTLTGKCACLGLWTGLTCDRAIGDFSVPAAASSWYKP 624
            +K CP  C   G C+  +G+C+C   WTGL C+R IGDF +P    +WYKP
Sbjct:    8 AKECPYDCWGNGACDPFSGRCSCNSRWTGLYCERIIGDFRIPEHNKTWYKP 58
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1397.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0L0FQP7_9EUKA4.010e-747.06EGF-like domain-containing protein (Fragment) n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1397contigP-littoralis_Contig1397:2756..4682 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog72019.SARC_09843T0
PFAMsEGF_2,Glyco_hydro_114
Model size630
Max annot lvl33154|Opisthokonta
Hectar predicted targeting categoryother localisation
Exons5
Evalue1.28e-10
EggNOG OGsCOG3868@1|root,2RCTR@2759|Eukaryota,39XS2@33154|Opisthokonta
DescriptionGlycoside-hydrolase family GH114
Cds size627
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789644.8399255-CDS-P-littoralis_Contig1397:2757..28811680789644.8399255-CDS-P-littoralis_Contig1397:2757..2881Pylaiella littoralis U1_48CDSP-littoralis_Contig1397 2758..2881 -
1680789644.8514192-CDS-P-littoralis_Contig1397:3177..33261680789644.8514192-CDS-P-littoralis_Contig1397:3177..3326Pylaiella littoralis U1_48CDSP-littoralis_Contig1397 3178..3326 -
1680789644.861211-CDS-P-littoralis_Contig1397:3647..37401680789644.861211-CDS-P-littoralis_Contig1397:3647..3740Pylaiella littoralis U1_48CDSP-littoralis_Contig1397 3648..3740 -
1680789644.8698175-CDS-P-littoralis_Contig1397:4172..43021680789644.8698175-CDS-P-littoralis_Contig1397:4172..4302Pylaiella littoralis U1_48CDSP-littoralis_Contig1397 4173..4302 -
1680789644.8782198-CDS-P-littoralis_Contig1397:4551..46821680789644.8782198-CDS-P-littoralis_Contig1397:4551..4682Pylaiella littoralis U1_48CDSP-littoralis_Contig1397 4552..4682 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1397.2.1prot_P-littoralis_Contig1397.2.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1397 2758..4682 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1397.2.1

>prot_P-littoralis_Contig1397.2.1 ID=prot_P-littoralis_Contig1397.2.1|Name=mRNA_P-littoralis_Contig1397.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=209bp
LQSCPRDCGECVADGDGICAYPFEDAGVGDCEGSSITNFIAYGGEEYATI
DNAEVLDGDYDDNSCTSSPVSVPAGWRIASWDADVAFNLIKTEGAVFDTY
CLVFEEGIAASSDTGLHDGAWETGCGIVPILRFNGNKFAINPDSCASRIM
IQRIKATGSKTCPTCGNGGVCNTLTGKCACLGLWTGLTCDRAIGDFSVPA
AASSWYKPS
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mRNA from alignment at P-littoralis_Contig1397:2756..4682-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1397.2.1 ID=mRNA_P-littoralis_Contig1397.2.1|Name=mRNA_P-littoralis_Contig1397.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1927bp|location=Sequence derived from alignment at P-littoralis_Contig1397:2756..4682- (Pylaiella littoralis U1_48)
CTGCAGAGCTGCCCTCGCGACTGCGGTGAATGCGTGGCGGATGGCGATGG
CATCTGCGCCTACCCCTTCGAAGACGCCGGTGTGGGAGACTGCGAAGGCT
CTTCCATCACAAACTTCATCGCCTACGGCGGGTGAGCGATGTTTCTTGTG
CCAATTCTTCTGTTATATGTCATCGAGTGGGCATTTCCACAACATGGTCC
TCGACAGCGGTCGTCCACGTCTACCGATCCCCTTATCAACGGCAGTGTAC
CTTGGCCAACCTTGTTCAGCACGCCGTGGTAACAGTGTCCACGCTGGTGC
TCCTTCATTGTTTGTCTCGTGTTTGGGCGGTGTTTGTGCGTGCGCCTCTC
GCGTCTGCCAACGAACCGCCATCGCAACAGAGAAGAGTACGCGACGATTG
ACAACGCGGAGGTACTGGACGGCGATTACGACGACAATTCCTGCACATCC
AGCCCTGTTTCCGTTCCCGCTGGCTGGCGAATCGCAAGCTGGGATGCCGA
CGTCGCCTTTGTGAGTGTGTCCGGTAATCCCCGGAAAAAGGAAAGTGCAT
GTGGGAGATTCATGCGGTCGCAGGATGGAGAACATCAAGAGTTAGTCAGC
TTGTACGTTTTTCTTACCCATTCGTCGTGTACATTGAGCAAGCATGTCCG
AACACCAAATACAGTTCTCGCCAAACACACTGGTTAAGCAAACCTCAGGC
GCAAGCGTTGATTGAGAGACCAGCACCAGTGGTTTTTGCATGGCGTGCGT
ATTGCATCTTCATCTACTTTGATTCCTGCCATGTACAGTATTGCGTCGAA
CGTTGAAAATGACTCATCATATCAAATGACTTCAAGGTGCGAACACTGTA
TATATATGCCATGCACTGTTTGTATCGAACTCGACACCTTCAAACCCCCG
GTCAACCCCCCACTGTACCTTCCTCGCGCTCCATGCTCGCAGAACTTGAT
CAAGACCGAAGGCGCCGTGTTCGACACATACTGCTTGGTATTCGAAGAAG
GGATCGCCGCCAGCAGCGACACTGGTCTGCACGACGTACGTTATGTATAT
TACACAGACCACCATTCATTCCGGCAACGGCTGCCACAGCTGTGGCAAAT
GCAAGGATGTCGAGACAATTGGAACATGATCCAAACACTGTTTTACCGGA
CGAGCTCATCTTACTTAAGTCCAGATGTTCAGCCCCGAACCAGTAGAGTT
ACAGCGCATCGAGAAGGACTCGAGGGTAGAAAAGAGGCATTCGAAACATT
GAAGCTATCCGAAGAACCTATACTCTCGCGTATCAGAGCAAGCCGTATTT
TCCAAGTGTGTTACACTAATTCTAACTCGACGGTCGTTGTATTTTTCGAT
ATGCAGGGCGCCTGGGAGACAGGCTGTGGGATCGTCCCCATCCTTCGCTT
CAACGGCAATAAGTTCGCCATTAATCCGGATAGCTGCGCATCTCGTATCA
TGATCCAGCGTATCAAGGCTACGGGCTCCAAGACATGCCCTACTTGCGGC
AACGGGTGAGTAGCACGGCAGGCTGCCGCGCATCTACGGTAGGGCAATAC
TCTTTGTATCGGGAAACCGTTGTTGCAAACGGAGTCTACGTCATCGTTGA
AGAACTCATGGGTGGCCGATGTGCGGTATCCGTATTCCATATATTAGTAC
CGTCGCTGCGTTGTGGTGGGGCATGCCCATAAACGTCCGTGTTCTTCGTC
ACTGCAGCCAAAGCAACATTTCCTAATTCAGCAACGCCCCCACACCACCG
ACCGGAACGCCCCAATCGACGGGTGTCTGCATGACCAAACAAACGACGCA
GTGGCGTGTGCAACACCCTGACCGGGAAGTGCGCCTGCCTCGGCCTCTGG
ACCGGCCTGACCTGCGATCGCGCGATTGGCGACTTTTCGGTACCCGCCGC
GGCGTCCAGCTGGTACAAGCCTTCTCT
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Coding sequence (CDS) from alignment at P-littoralis_Contig1397:2756..4682-

>mRNA_P-littoralis_Contig1397.2.1 ID=mRNA_P-littoralis_Contig1397.2.1|Name=mRNA_P-littoralis_Contig1397.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=627bp|location=Sequence derived from alignment at P-littoralis_Contig1397:2756..4682- (Pylaiella littoralis U1_48)
CTGCAGAGCTGCCCTCGCGACTGCGGTGAATGCGTGGCGGATGGCGATGG
CATCTGCGCCTACCCCTTCGAAGACGCCGGTGTGGGAGACTGCGAAGGCT
CTTCCATCACAAACTTCATCGCCTACGGCGGAGAAGAGTACGCGACGATT
GACAACGCGGAGGTACTGGACGGCGATTACGACGACAATTCCTGCACATC
CAGCCCTGTTTCCGTTCCCGCTGGCTGGCGAATCGCAAGCTGGGATGCCG
ACGTCGCCTTTAACTTGATCAAGACCGAAGGCGCCGTGTTCGACACATAC
TGCTTGGTATTCGAAGAAGGGATCGCCGCCAGCAGCGACACTGGTCTGCA
CGACGGCGCCTGGGAGACAGGCTGTGGGATCGTCCCCATCCTTCGCTTCA
ACGGCAATAAGTTCGCCATTAATCCGGATAGCTGCGCATCTCGTATCATG
ATCCAGCGTATCAAGGCTACGGGCTCCAAGACATGCCCTACTTGCGGCAA
CGGTGGCGTGTGCAACACCCTGACCGGGAAGTGCGCCTGCCTCGGCCTCT
GGACCGGCCTGACCTGCGATCGCGCGATTGGCGACTTTTCGGTACCCGCC
GCGGCGTCCAGCTGGTACAAGCCTTCT
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