mRNA_P-littoralis_Contig1395.9.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1395.9.1
Unique NamemRNA_P-littoralis_Contig1395.9.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1395.9.1 vs. uniprot
Match: D7FZ65_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ65_ECTSI)

HSP 1 Score: 260 bits (664), Expect = 5.980e-80
Identity = 132/181 (72.93%), Postives = 148/181 (81.77%), Query Frame = 1 
Query:  460 TEYGVGTVPRLAKMLTGLTKEPNNGDLLIKDGVYFDHDRLKELESDFNTAYMFNPIHIGVTLNKTNVGNGGREPTKVESGGRELVVESFNDGKYMLEDGTEIGQWELLEKRCDGGVTLDDECRRFVGYKVSTYVSMMARGVPFERAGKNMSGVGMLWNVDDAIAKIETGGFDLDEGDMNLQ 1002
            T YGV TVP LAKMLTGLT++PNN +LL++DGVY   D+L ELES F+ AYMFNP HIGV+LN  +  N     TKVE GGRELVV+SFN GKY LEDGTEIGQWELLE RC GGVTLDDECRRFV + V+TY +MMARGVPFER G NMSG GMLWNVDDAI ++E+G FDLDEGDMNLQ
Sbjct:  256 TVYGVETVPGLAKMLTGLTEDPNNDNLLVEDGVYCRRDKLDELESAFSAAYMFNPSHIGVSLNPLDPLN----ETKVEIGGRELVVKSFNTGKYTLEDGTEIGQWELLETRCGGGVTLDDECRRFVRFLVATYTAMMARGVPFERDGGNMSG-GMLWNVDDAITRLESGSFDLDEGDMNLQ 431
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BLAST of mRNA_P-littoralis_Contig1395.9.1 vs. uniprot
Match: D8LPM1_ECTSI (PHD-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPM1_ECTSI)

HSP 1 Score: 130 bits (327), Expect = 1.950e-29
Identity = 88/209 (42.11%), Postives = 120/209 (57.42%), Query Frame = 1 
Query:  472 VGTVPRLAKMLT-GLTKEPNNGDLLIKDGVYFDHDRLKELESDFNTAYMFNPIHIGVTLNKTNVGNGGREPTKVESGGRELVVESFNDGKYMLEDGTEIGQWELLEKRCDGGVTLDDECRRFVGYKVSTYVSMMARGVPFERAGKNMSGV-GMLWNVDDAIAKIETGGFDLDEGDMNLQQLRALKERLIERRTLILRVFTGLSVEDTLP 1092
            + ++P +AK+LT GL  +P +G + I DGV+F    L  LE  FN  Y+F+P  IGV L  T VG    E           VVESF+ G+Y L DG+ + QW +LE R DGGVTL+DE RRF+ + V+TYV+MMA  VP        S V  M+WN  +A  K ET     +E D  + ++  L++       L LR+FTG +V+DTLP
Sbjct:  733 ITSIPLIAKLLTRGLCDDPLDG-IEILDGVFFKRAALDALERYFNWEYVFDPESIGVFLGTTKVGIDDEE----------FVVESFDCGEYSLSDGSVMQQWGVLENRTDGGVTLEDEQRRFIIHLVTTYVNMMAHVVPVVIEESTPSMVKDMMWNPVEA-GKRETNKERREELDQIINRVNTLRD-------LTLRIFTGAAVKDTLP 922
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BLAST of mRNA_P-littoralis_Contig1395.9.1 vs. uniprot
Match: A0A6H5K2A3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2A3_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 9.040e-21
Identity = 77/199 (38.69%), Postives = 110/199 (55.28%), Query Frame = 1 
Query:  469 GVGTVPRLAKML-TGLTKEPNNGDLLIKDGVYFDHDRLKELESDFNTAYMFNPIHIGVTLNKTNVGNGGREPTKVESGGRELVVESFNDGKYMLEDGTE--IGQWELLEKRCDGGVTLDDECRRFVGYKVSTYVSMMARGVPFERAGKNMSGV--GMLWNVDDAIAKIETGGFDLD-EGDMNLQQLRALKERLIERRTL 1047
            G  ++P + K+L  GL  +   GD+ I DGVY+    L+ L+  ++ +Y+ +P +I V   +T V        K++ G    VV+S + GKY LE G E  I QWELLEKRCD GVTL  + RRF+ + V+ Y  MM   VP       ++GV   MLWN +DA+A     G D D E +M   +L ++KER+   R L
Sbjct:  238 GNTSIPVMVKLLGDGLCTDQGKGDIEISDGVYYKRAELRNLQYYYDKSYVLDPQNIWVVFGQTRV--------KIDGGVH--VVKSVDHGKYTLE-GRESTITQWELLEKRCDEGVTLYTDLRRFILHLVTKYTVMMGSVVPA------LTGVLTVMLWNPNDAVAN--KCGDDTDPESNMKTSELMSIKERVDTLRDL 417
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1395.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FZ65_ECTSI5.980e-8072.93Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LPM1_ECTSI1.950e-2942.11PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5K2A3_9PHAE9.040e-2138.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1395contigP-littoralis_Contig1395:17481..18649 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1092
Hectar predicted targeting categoryother localisation
Exons2
Cds size1092
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789644.5430992-CDS-P-littoralis_Contig1395:17480..178431680789644.5430992-CDS-P-littoralis_Contig1395:17480..17843Pylaiella littoralis U1_48CDSP-littoralis_Contig1395 17481..17843 +
1680789644.551579-CDS-P-littoralis_Contig1395:17920..186491680789644.551579-CDS-P-littoralis_Contig1395:17920..18649Pylaiella littoralis U1_48CDSP-littoralis_Contig1395 17921..18649 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1395.9.1prot_P-littoralis_Contig1395.9.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1395 17481..18649 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1395.9.1

>prot_P-littoralis_Contig1395.9.1 ID=prot_P-littoralis_Contig1395.9.1|Name=mRNA_P-littoralis_Contig1395.9.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=364bp
MSRATFGGGGGGSDSDGGNDGDDGGGDPSSSGGGDTDGEGDISSRGSGGN
SGGTDSSSDDSGGTDSSSDDSDSGGGGGRGRGGGGSSRGSNRGGRGGGGS
SRGSSRGGRGSSNPAKRHTSRHEASDTERIAAKRAQSDKTTKSRAKTVDT
AKRTEYGVGTVPRLAKMLTGLTKEPNNGDLLIKDGVYFDHDRLKELESDF
NTAYMFNPIHIGVTLNKTNVGNGGREPTKVESGGRELVVESFNDGKYMLE
DGTEIGQWELLEKRCDGGVTLDDECRRFVGYKVSTYVSMMARGVPFERAG
KNMSGVGMLWNVDDAIAKIETGGFDLDEGDMNLQQLRALKERLIERRTLI
LRVFTGLSVEDTLP
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mRNA from alignment at P-littoralis_Contig1395:17481..18649+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1395.9.1 ID=mRNA_P-littoralis_Contig1395.9.1|Name=mRNA_P-littoralis_Contig1395.9.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1169bp|location=Sequence derived from alignment at P-littoralis_Contig1395:17481..18649+ (Pylaiella littoralis U1_48)
ATGAGCCGTGCTACCTTCGGCGGTGGCGGGGGTGGCAGCGACAGCGATGG
TGGTAACGACGGCGACGACGGTGGGGGCGACCCCAGTAGCAGCGGCGGCG
GCGACACCGATGGCGAGGGTGACATCAGCAGCCGTGGCAGCGGCGGAAAC
AGCGGTGGCACCGATAGCAGCAGCGATGACAGCGGTGGCACCGACAGCAG
CAGCGACGACAGCGACAGCGGTGGCGGCGGTGGTCGCGGGCGGGGCGGAG
GCGGTAGCAGCCGTGGAAGCAACAGAGGCGGGAGGGGCGGCGGTGGCAGC
AGCCGTGGGAGCAGCAGAGGCGGGAGGGGCAGCAGCAACCCCGCGAAAAG
ACATACCAGTCGGGTACGCATCCCGCCCCTGGAATGGCGCGGATGGACGC
ACCGGAGTTGGGGAGGATATTTACTACCCCGGACCCGGAGCACGAGGCAA
GTGACACGGAGCGTATCGCGGCAAAACGTGCGCAGTCTGATAAGACAACA
AAGAGTCGGGCGAAAACGGTAGACACAGCAAAACGTACGGAGTATGGGGT
GGGGACGGTGCCGAGACTCGCTAAGATGCTCACGGGGCTGACGAAGGAAC
CCAACAACGGCGATCTTCTCATCAAAGATGGGGTCTACTTCGACCATGAC
CGCCTCAAGGAGCTAGAGAGCGACTTCAACACAGCCTACATGTTTAACCC
CATCCACATCGGGGTGACTCTGAACAAGACAAACGTCGGGAATGGTGGGC
GGGAGCCGACAAAGGTCGAGAGTGGTGGGCGGGAGCTGGTCGTGGAGTCG
TTCAACGACGGCAAGTACATGCTGGAGGACGGAACCGAGATTGGACAATG
GGAGCTATTGGAGAAAAGGTGTGACGGGGGTGTGACGCTTGATGACGAGT
GTCGGCGCTTTGTTGGATACAAGGTGTCGACTTACGTCTCTATGATGGCT
CGCGGCGTGCCGTTCGAGAGAGCGGGTAAAAATATGTCGGGCGTGGGGAT
GCTGTGGAACGTCGACGATGCTATTGCAAAGATTGAGACCGGTGGTTTCG
ACTTGGACGAGGGTGATATGAACTTGCAGCAGCTGCGTGCGCTAAAGGAA
CGTCTTATCGAGCGGCGGACCCTCATACTCAGAGTTTTCACCGGCCTGAG
CGTGGAGGACACCCTGCCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1395:17481..18649+

>mRNA_P-littoralis_Contig1395.9.1 ID=mRNA_P-littoralis_Contig1395.9.1|Name=mRNA_P-littoralis_Contig1395.9.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1092bp|location=Sequence derived from alignment at P-littoralis_Contig1395:17481..18649+ (Pylaiella littoralis U1_48)
ATGAGCCGTGCTACCTTCGGCGGTGGCGGGGGTGGCAGCGACAGCGATGG
TGGTAACGACGGCGACGACGGTGGGGGCGACCCCAGTAGCAGCGGCGGCG
GCGACACCGATGGCGAGGGTGACATCAGCAGCCGTGGCAGCGGCGGAAAC
AGCGGTGGCACCGATAGCAGCAGCGATGACAGCGGTGGCACCGACAGCAG
CAGCGACGACAGCGACAGCGGTGGCGGCGGTGGTCGCGGGCGGGGCGGAG
GCGGTAGCAGCCGTGGAAGCAACAGAGGCGGGAGGGGCGGCGGTGGCAGC
AGCCGTGGGAGCAGCAGAGGCGGGAGGGGCAGCAGCAACCCCGCGAAAAG
ACATACCAGTCGGCACGAGGCAAGTGACACGGAGCGTATCGCGGCAAAAC
GTGCGCAGTCTGATAAGACAACAAAGAGTCGGGCGAAAACGGTAGACACA
GCAAAACGTACGGAGTATGGGGTGGGGACGGTGCCGAGACTCGCTAAGAT
GCTCACGGGGCTGACGAAGGAACCCAACAACGGCGATCTTCTCATCAAAG
ATGGGGTCTACTTCGACCATGACCGCCTCAAGGAGCTAGAGAGCGACTTC
AACACAGCCTACATGTTTAACCCCATCCACATCGGGGTGACTCTGAACAA
GACAAACGTCGGGAATGGTGGGCGGGAGCCGACAAAGGTCGAGAGTGGTG
GGCGGGAGCTGGTCGTGGAGTCGTTCAACGACGGCAAGTACATGCTGGAG
GACGGAACCGAGATTGGACAATGGGAGCTATTGGAGAAAAGGTGTGACGG
GGGTGTGACGCTTGATGACGAGTGTCGGCGCTTTGTTGGATACAAGGTGT
CGACTTACGTCTCTATGATGGCTCGCGGCGTGCCGTTCGAGAGAGCGGGT
AAAAATATGTCGGGCGTGGGGATGCTGTGGAACGTCGACGATGCTATTGC
AAAGATTGAGACCGGTGGTTTCGACTTGGACGAGGGTGATATGAACTTGC
AGCAGCTGCGTGCGCTAAAGGAACGTCTTATCGAGCGGCGGACCCTCATA
CTCAGAGTTTTCACCGGCCTGAGCGTGGAGGACACCCTGCCC
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