mRNA_P-littoralis_Contig1394.2.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig1394.2.1 vs. uniprot
Match: A0A6H5L481_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L481_9PHAE) HSP 1 Score: 179 bits (454), Expect = 6.280e-47 Identity = 127/238 (53.36%), Postives = 158/238 (66.39%), Query Frame = 3
Query: 135 EELGDSNDYPERPKNWMHQYLMIFCLIGRPSSSEDPDLATARKTSGPPGRERTPRKQTTRGGKRKAGXXXXXXXXXXXDIISYSS------GAGSNGNLDSTAIRTYAGAGEAQSRAQVKKESAAVAKNVASEAYRQKRLAQTSQLAQAVVSLSESVAAKCTLDEEAAVRAREVAARVRKDQAIRDLQGRMALEEADSPLLLELRAALR------LTAFMDATALPAATPASAPGAAS 812
E+ GD +YP RP WMH L+I+C IGRPS SEDPDLATARKTSGPP RG KRK+ XXXXXXXXXXX S G GS+GNL STAIRT+AGAGE QSRAQV+K+ A V A+EA+RQKRLAQ Q+ +AV +L++SVAA+ LDEEAAVRARE AA RK + + +++G + E DS ELRAA++ L+ FM+A A TP+ G+++
Sbjct: 247 EQAGDDGEYPPRPDGWMHPLLLIYCFIGRPSDSEDPDLATARKTSGPP----------KRGSKRKSXXXXXXXXXXXXXXXSTGESETEPGGVGSDGNLTSTAIRTFAGAGEPQSRAQVQKQQAEVKSKAANEAFRQKRLAQGDQITKAVKTLADSVAARRVLDEEAAVRARETAAESRKQRKVNNMRGLLEFSEVDSAQYYELRAAIKAVYHQPLSDFMEAIPPAATTPSPEAGSST 474
BLAST of mRNA_P-littoralis_Contig1394.2.1 vs. uniprot
Match: A0A6H5JU95_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU95_9PHAE) HSP 1 Score: 119 bits (297), Expect = 1.400e-27 Identity = 96/199 (48.24%), Postives = 119/199 (59.80%), Query Frame = 3
Query: 183 MHQYLMIFCLIGRPSSSEDPDLATARKTSGPPGRERTPRKQTTRGGKRKAGXXXXXXXXXXXDIISYSSGAGSNGNLDSTAIRTYAGAGEAQSRAQVKKESAAVAKNVASEAYRQKRLAQTSQLAQAVVSLSESVAAKCTLDEEAAVRAREVAARVRKDQAIRDLQGRMALEEADSPLLLELRA---ALRLTAFMDATA 770
MH YL+ +CLIGRPSSSEDPDL TARKTSGP GR GGK+KA S +SGA ++ +L S+AIR +AGAGE QSRAQVKKE AAVA A E R+ + A T L AV +LS +V ++ LDEEAA RAR AR+ K I DL+G++ + P + LRA AL ++ ATA
Sbjct: 1 MHPYLLTYCLIGRPSSSEDPDLRTARKTSGPKGR----------GGKQKAKKGSPSTSDGSG---SETSGAYTDVDLSSSAIRMFAGAGEVQSRAQVKKEHAAVAAANAQEQARRVQQAHTVFLVTAVGALSAAVVSRQALDEEAAHRARWDYARLAKKAKIDDLRGKLEFT-LEGPTAMALRASIAALXVSVICSATA 185
BLAST of mRNA_P-littoralis_Contig1394.2.1 vs. uniprot
Match: D7FSK1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSK1_ECTSI) HSP 1 Score: 120 bits (300), Expect = 1.120e-26 Identity = 84/179 (46.93%), Postives = 109/179 (60.89%), Query Frame = 3
Query: 159 YPERPKNWMHQYLMIFCLIGRPSSSEDPDLATARKTSGPPGRERTPRKQTTRGGKRKAGXXXXXXXXXXXDIISYSSGAGSNGNLDSTAIRTYAGAGEAQSRAQVKKESAAVAKNVASEAYRQKRLAQTSQLAQAVVSLSESVAAKCTLDEEAAVRAREVAARVRKDQAIRDLQGRMAL 695
YP+RP WMH YL+ +CLIGRPSSSEDPDL T RKTSGP GR GGK+K+ + S +SGA ++ +L S AIR +AGAGE++SRAQVKKE AVA A E R+ + T +L AV + S +V ++ LDEEAA R+ AR+ K I DL+G + +
Sbjct: 135 YPDRPDKWMHPYLLTYCLIGRPSSSEDPDLRTTRKTSGPKGR----------GGKQKS---KRGSPGTSDESGSETSGAYTDVDLSSNAIRMFAGAGESRSRAQVKKEHEAVAAANAQEQARRVQQTHTGKLVTAVEAWSAAVVSRQALDEEAAHRSHWDYARLAKKAKIDDLRGEVGV 300
BLAST of mRNA_P-littoralis_Contig1394.2.1 vs. uniprot
Match: A0A6H5K3M7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3M7_9PHAE) HSP 1 Score: 119 bits (298), Expect = 1.590e-26 Identity = 100/215 (46.51%), Postives = 126/215 (58.60%), Query Frame = 3
Query: 183 MHQYLMIFCLIGRPSSSEDPDLATARKTSGPPGRERTPRKQTTRGGKRKAGXXXXXXXXXXXDIISYSSGAGSNGNLDSTAIRTYAGAGEAQSRAQVKKESAAVAKNVASEAYRQKRLAQTSQLAQAVVSLSESVAAKCTLDEEAAVRAREVAARVRKDQAIRDLQGRMALEEADSPLLLELRAALRLTAFMD-ATALP----AATPASAPGAAS 812
MH YL+ +CLIGRPSSSEDPDL TARKTSGP GR GGK+K S +SGA ++ +L S+AIR +AGAGE QSRAQVKKE AAVA A E + + A T +L AV +LS +V ++ LDEEAA RAR AR+ K I DL+G++ + P + LRA++ MD A +P A TP +A GA S
Sbjct: 1 MHPYLLTYCLIGRPSSSEDPDLRTARKTSGPKGR----------GGKQKVKNGSPSTSDGSG---SETSGAYTDVDLSSSAIRMFAGAGEVQSRAQVKKEHAAVAAANAQEQAPRVQQAHTGKLVTAVEALSAAVVSRQALDEEAAHRARWDYARLAKQAKIDDLRGKLEFT-LEGPKAMALRASISALYDMDDADFMPKPISAPTPPAAGGAPS 201
BLAST of mRNA_P-littoralis_Contig1394.2.1 vs. uniprot
Match: A0A6H5KXV2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXV2_9PHAE) HSP 1 Score: 118 bits (296), Expect = 1.660e-26 Identity = 85/164 (51.83%), Postives = 99/164 (60.37%), Query Frame = 3
Query: 150 SNDYPERPKNWMHQYLMIFCLIGRPSSSEDPDLATARKTSGPPGRERTPRKQTTRGGKRKAGXXXXXXXXXXXDIISYSSGAGSNGNLDSTAIRTYAGAGEAQSRAQVKKESAAVAKNVASEAYRQKRLAQ---TSQLAQAVVSLSESVAAKCTLDEEAAVRAR 632
S YP+RP WMH YL+ CL+GRPSSSEDPDL TARKTSGP GR GGK+KA S +SGA + +L S+AIR +AG GE QSRAQVKKE AAVA A E Q R Q T +L AV +LS +V ++ LDEEAA RAR
Sbjct: 116 SGGYPDRPNKWMHPYLLTCCLVGRPSSSEDPDLRTARKTSGPKGR----------GGKQKAKKGSPSTSDGSG---SETSGAYTEVDLSSSAIRMFAGGGEIQSRAQVKKEHAAVAAANAQEQAEQARRVQQAHTGKLVTAVEALSAAVVSRQALDEEAAHRAR 266
BLAST of mRNA_P-littoralis_Contig1394.2.1 vs. uniprot
Match: A0A6H5JWP9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWP9_9PHAE) HSP 1 Score: 110 bits (276), Expect = 7.550e-24 Identity = 77/154 (50.00%), Postives = 93/154 (60.39%), Query Frame = 3
Query: 159 YPERPKNWMHQYLMIFCLIGRPSSSEDPDLATARKTSGPPGRERTPRKQTTRGGKRKAGXXXXXXXXXXXDIISYSSGAGSNGNLDSTAIRTYAGAGEAQSRAQVKKESAAVAKNVASEAYRQKRLAQTSQLAQAVVSLSESVAAKCTLDEEAA 620
YP+R WMH YL+ +CLIGRPSSSEDPDL TARKTSGP GR GK+KA S +SGA + L S+AIRT+AGA E QSRAQVK E AVA A E R+ + A T +L AV +LS +V ++ LDE+AA
Sbjct: 94 YPDRSNKWMHPYLLTYCLIGRPSSSEDPDLRTARKTSGPKGRA----------GKQKAQKESPSTSDGSG---SETSGAYTEVGLSSSAIRTFAGADEIQSRAQVKNEHTAVAAANAQEQARRVQQAHTGKLVTAVEALSAAVVSRQALDEDAA 234
BLAST of mRNA_P-littoralis_Contig1394.2.1 vs. uniprot
Match: A0A6H5KPB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPB5_9PHAE) HSP 1 Score: 108 bits (271), Expect = 4.020e-22 Identity = 78/157 (49.68%), Postives = 94/157 (59.87%), Query Frame = 3
Query: 162 PERPKNWMHQYLMIFCLIGRPSSSEDPDLATARKTSGPPGRERTPRKQTTRGGKRKAGXXXXXXXXXXXDIISYSSGAGSNGNLDSTAIRTYAGAGEAQSRAQVKKESAAVAKNVASEAYRQKRLAQTSQLAQAVVSLSESVAAKCTLDEEAAVRAR 632
P+RP WMH YL+ +CLIGRPSSSEDPDL TARKTSG GR GGK+ A S +SGA + +L S+AIR +AG GE QSRAQ+KKE A VA A E R+ + A T +L AV +LS +V + LDEEAA R R
Sbjct: 81 PDRPNKWMHPYLLTYCLIGRPSSSEDPDLRTARKTSGLKGR----------GGKQNAKKGSPSTIDGSG---SETSGAYTEVDLSSSAIRMFAGTGEIQSRAQMKKEHAVVAAANAQEQARRVQQAHTGKLVTAVGALSAAVVSMQALDEEAAHRGR 224
BLAST of mRNA_P-littoralis_Contig1394.2.1 vs. uniprot
Match: A0A6H5J848_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J848_9PHAE) HSP 1 Score: 107 bits (266), Expect = 4.510e-22 Identity = 95/216 (43.98%), Postives = 121/216 (56.02%), Query Frame = 3
Query: 183 MHQYLMIFCLIGRPSSSEDPDLATARKTSGPPGRERTPRKQTTRGGKRKAGXXXXXXXXXXXDIISYSSGAGSNGNLDSTAIRTYAGAGEAQSRAQVKKESAAVAKNVASEAYRQKRLAQTSQLAQAVVSLSESVAAKCTLDEEAAVRAREVAARVRKDQAIRDLQGRMALEEADSPLLLELRAALRLT-----AFMDATALPAATPASAPGAASR 815
MHQYL+ FCLIGRP SSEDPDL TARKTSGP GR + K GG +KA D SGA + +L S AIR + GAGE +S AQVK+ +A A N +A R + T +L AV +LS +V ++ +LDEEAA RAR AR K I DL+G + ++ + ELRAA+ ++ A + AATP A GAA R
Sbjct: 1 MHQYLLTFCLIGRPCSSEDPDLRTARKTSGPNGRGASGAKGC--GGTQKA----KKGSPGTSDESGSESGAYTEIDLSSNAIRMFTGAGEIESLAQVKETAAVAAANAQLQARRVQET-NTGKLVTAVEALSAAVVSRQSLDEEAAGRARLADAREAKKAKIADLKGMLEYAPSEQKTM-ELRAAIMAAYEQPDSYFLAKPISAATPPGA-GAALR 207
BLAST of mRNA_P-littoralis_Contig1394.2.1 vs. uniprot
Match: A0A6H5JGS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGS6_9PHAE) HSP 1 Score: 98.6 bits (244), Expect = 6.950e-19 Identity = 73/167 (43.71%), Postives = 93/167 (55.69%), Query Frame = 3
Query: 156 DYPERPKNWMHQYLMIFCLIGRPSSSEDPDLATARKTSGPPGRERTPRKQTTRGGKRKAGXXXXXXXXXXXDIISYSSGAGSNGNLDSTAIRTYAGAGEAQSRAQVKKESAAVAKNVASEAYRQKRLAQTSQLAQAVVSLSESVAAKCTLDEEAAVRAREVAARVRK 656
+YP+R WMH YL+ +CLIGR SSSEDP+L TARKT G R +SGA + +L S+AIR +AGAG+ QSRAQVKKE AAVA A E R+ + A T + AV +LS +V ++ LDE+AA RAR AR+ K
Sbjct: 195 EYPDRGNKWMHPYLLTYCLIGRASSSEDPELRTARKTDGSGSR---------------------------------TSGAHTEVDLSSSAIRMFAGAGKIQSRAQVKKEYAAVAAANAQEQVRRVQQAHTGKQVTAVEALSAAVVSRQALDEDAAHRARWDYARLAK 328
BLAST of mRNA_P-littoralis_Contig1394.2.1 vs. uniprot
Match: A0A6H5KBX2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBX2_9PHAE) HSP 1 Score: 88.2 bits (217), Expect = 9.720e-16 Identity = 54/104 (51.92%), Postives = 64/104 (61.54%), Query Frame = 3
Query: 159 YPERPKNWMHQYLMIFCLIGRPSSSEDPDLATARKTSGPPGRERTPRKQTTRGGKRKAGXXXXXXXXXXXDIISYSSGAGSNGNLDSTAIRTYAGAGEAQSRAQ 470
+P+RPK WMHQYL+ FCLIGRP SSEDPDL TARKTSG GR GK+KA + S +SGA + +L S AIR + GAGE QS+AQ
Sbjct: 188 FPQRPKKWMHQYLLTFCLIGRPCSSEDPDLRTARKTSGAKGRGAXXXXXXX--GKQKA---KKGSPGTSDESGSEASGAYTEVDLSSNAIRMFTGAGEIQSQAQ 286 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1394.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 17
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1394.2.1 >prot_P-littoralis_Contig1394.2.1 ID=prot_P-littoralis_Contig1394.2.1|Name=mRNA_P-littoralis_Contig1394.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=216bp MHQYLMIFCLIGRPSSSEDPDLATARKTSGPPGRERTPRKQTTRGGKRKAback to top mRNA from alignment at P-littoralis_Contig1394:20648..22177- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig1394.2.1 ID=mRNA_P-littoralis_Contig1394.2.1|Name=mRNA_P-littoralis_Contig1394.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1530bp|location=Sequence derived from alignment at P-littoralis_Contig1394:20648..22177- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig1394:20648..22177- >mRNA_P-littoralis_Contig1394.2.1 ID=mRNA_P-littoralis_Contig1394.2.1|Name=mRNA_P-littoralis_Contig1394.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=648bp|location=Sequence derived from alignment at P-littoralis_Contig1394:20648..22177- (Pylaiella littoralis U1_48)back to top |