mRNA_P-littoralis_Contig1390.3.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1390.3.1
Unique NamemRNA_P-littoralis_Contig1390.3.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1390.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1390contigP-littoralis_Contig1390:22689..23122 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size242
Hectar predicted targeting categoryother localisation
Exons2
Cds size231
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789644.120513-CDS-P-littoralis_Contig1390:22688..228081680789644.120513-CDS-P-littoralis_Contig1390:22688..22808Pylaiella littoralis U1_48CDSP-littoralis_Contig1390 22689..22808 -
1680789644.1315575-CDS-P-littoralis_Contig1390:23000..231111680789644.1315575-CDS-P-littoralis_Contig1390:23000..23111Pylaiella littoralis U1_48CDSP-littoralis_Contig1390 23001..23111 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789644.1399877-UTR-P-littoralis_Contig1390:23111..231221680789644.1399877-UTR-P-littoralis_Contig1390:23111..23122Pylaiella littoralis U1_48UTRP-littoralis_Contig1390 23112..23122 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1390.3.1prot_P-littoralis_Contig1390.3.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1390 22689..23111 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1390.3.1

>prot_P-littoralis_Contig1390.3.1 ID=prot_P-littoralis_Contig1390.3.1|Name=mRNA_P-littoralis_Contig1390.3.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=77bp
MLSTPEKDEGGPRTRSHTTPTTSDRALESDRCAPRPRVWTPASIATLEFG
FLCWDEPNSLTSMLPVCLWLKHHKRSG
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mRNA from alignment at P-littoralis_Contig1390:22689..23122-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1390.3.1 ID=mRNA_P-littoralis_Contig1390.3.1|Name=mRNA_P-littoralis_Contig1390.3.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=434bp|location=Sequence derived from alignment at P-littoralis_Contig1390:22689..23122- (Pylaiella littoralis U1_48)
GGCTGCCGTCGATGCTTTCGACGCCGGAGAAGGATGAGGGAGGGCCGAGG
ACACGATCGCACACCACGCCCACCACGAGTGATCGTGCATTGGAGAGCGA
CCGCTGCGCTCCGAGACCACGAGTAAGCCTACTTCACCATAGAGTCCGGG
GTGGGGGTGGCGGAGCATCTCTCCACCGTGAAGTAATGTTGTTGAGGAAC
ACACAGAGTTCCTCATAGCTTTTTTAATAGGTGTCCCGCGTTTCCTTCCC
CTGTCGTCCTCCCCACTCCCGCCCCCTCGACCCTCGTACCTCTGTGTCGT
CGTTTGTGATATAGGTGTGGACGCCCGCGTCCATCGCCACCTTAGAGTTT
GGCTTCCTCTGTTGGGATGAACCCAACAGCCTGACGAGCATGTTGCCTGT
GTGCCTCTGGCTCAAGCACCACAAGCGGTCAGGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1390:22689..23122-

>mRNA_P-littoralis_Contig1390.3.1 ID=mRNA_P-littoralis_Contig1390.3.1|Name=mRNA_P-littoralis_Contig1390.3.1|organism=Pylaiella littoralis U1_48|type=CDS|length=231bp|location=Sequence derived from alignment at P-littoralis_Contig1390:22689..23122- (Pylaiella littoralis U1_48)
ATGCTTTCGACGCCGGAGAAGGATGAGGGAGGGCCGAGGACACGATCGCA
CACCACGCCCACCACGAGTGATCGTGCATTGGAGAGCGACCGCTGCGCTC
CGAGACCACGAGTGTGGACGCCCGCGTCCATCGCCACCTTAGAGTTTGGC
TTCCTCTGTTGGGATGAACCCAACAGCCTGACGAGCATGTTGCCTGTGTG
CCTCTGGCTCAAGCACCACAAGCGGTCAGGC
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