mRNA_P-littoralis_Contig139.90.5 (mRNA) Pylaiella littoralis U1_48
|
Overview
Homology
BLAST of mRNA_P-littoralis_Contig139.90.5 vs. uniprot
Match: A0A6H5JGP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGP4_9PHAE) HSP 1 Score: 250 bits (638), Expect = 7.820e-68 Identity = 244/545 (44.77%), Postives = 279/545 (51.19%), Query Frame = 3
Query: 129 FAVHQLVKVAQRQWPGVNKEGGDARVLKMNEDGTVAVAYIIGKRSEASVHVKYVQPTEETDRRAGRRGGANSRSSTRSLRLQRSVKAPKQFDEAVERVATVAAGPELPELVPGTPKFVLQQVKEMERLLCRIEKEDSYDMFRTARDPIDKLKGTGEHQEDHENGGGAGDSHSSCVLLAPGRGGDSSLDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESAAFRAAATPRINLPQIRERFVSGHYVPAPGSYLILSEE--PAYGEASTTAATSPEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSALFSSPARDGPPSPPSEKTPPVKAENKQKDATL------------------LALTRDSGRLGEEATLTFEYEPLLDWAGLRADVAGMASRMLKGAEDWQAEKK 1703
F V Q V VAQRQWPGVNKEGG RV K+N DGTVAVAYIIG RSEA V +KYV+ E+ + AG GG SRS+TRSLR R+VKAPKQFDE V R++T A GPELPEL GTPKF+ QQVK+ME+L+ RIEKEDSY++FRT DPI+KLKG E + D + GG A S +CV GR SS XXXXXXXX XXXXXXXXXXX ES TP INLPQIRERFV G YVPAPGSYL+ S+E PA GEAS A XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX + ++ A + PP+ TP A K L L LTRDSGRLG A LTF+YEPLLDWAGLRAD+AGM R+++ AEDW++E++
Sbjct: 2 FEVGQDVVVAQRQWPGVNKEGGPGRVSKVNSDGTVAVAYIIGNRSEARVPLKYVRLLEQPEGLAGSTGGVQSRSATRSLRGARAVKAPKQFDETVARMSTSATGPELPELAAGTPKFIHQQVKDMEKLISRIEKEDSYEIFRTELDPIEKLKGMEEAEGDEQTGGDADRSGFACVAAGRGRSAASSXX---------------XXXXXXXXEGAPQSSDKKRAGSPVRGDGGSXXXXXXXXXXXRPRKGSSVAVNVGEPAAAVAGADVPTPPRRSPSTALEDAMDVDSEGKAGGEGDSAATGRNGVLLKESQHPVKPKTPPINLPQIRERFVRGCYVPAPGSYLVQSQEAVPARGEASGDQAP--------LLTSGDDGSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVAGAPKGPRNRPSSSRSGSSSPPLPSQSPKEVATAKAAE----PPAPATPSGTAVTKTASKALKPTGRASSPSLQTRPTPVLPLTRDSGRLGGAAKLTFDYEPLLDWAGLRADIAGMVGRIVQWAEDWKSERE 519
BLAST of mRNA_P-littoralis_Contig139.90.5 vs. uniprot
Match: D8LRP6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRP6_ECTSI) HSP 1 Score: 241 bits (616), Expect = 6.000e-65 Identity = 261/536 (48.69%), Postives = 297/536 (55.41%), Query Frame = 3
Query: 117 MVTTFAVHQLVKVAQRQWPGVNKEGGDARVLKMNEDGTVAVAYIIGKRSEASVHVKYVQPTEETDRRAGRRGGANSRSSTRSLRLQRSVKAPKQFDEAVERVATVAAGPELPELVPGTPKFVLQQVKEMERLLCRIEKEDSYDMFRTARDPIDKLKGTGEHQEDHENGGGAGDSHSSCVLLAPGRGGDSSLDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESAAFRAAATPRINLPQIRERFVSGHYVPAPGSYLILSEE--PAYGEASTTAA---TSPEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------SALFSSPARDGPPSPPSEKTPPVKAENKQKDATLLALTRDSGRLGEEATLTFEYEPLLDWAGLRADVAGMASRMLKGAED 1685
MVT F V Q V VAQRQWPGVNKEGG RV K+N DGT+AVAYIIG RSEA V +KYV+ E+ + G GG SRS+TRSLR R+VKAPKQFDE V R++ A GPELPEL GTPKF+ QQVK+ME+L+ RIEKEDSY++FRT DPI+KLKGT + D +NGG A S + V GR SS G XXXXXXXXXXXXXXXXXXXXXXXXXXXXX ES P INLPQIRERFV G YVPAPGSYL+ S+E PA GEAS A TS +XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXX +A+ + ++ S P+ K + + +L LTRDSGRLG A LTF+YEPLLDWAGLRAD+AGM RM++ AED
Sbjct: 1 MVTMFEVGQDVVVAQRQWPGVNKEGGPGRVSKINSDGTIAVAYIIGNRSEARVPLKYVRLLEQPEGPTGSTGGVRSRSATRSLRGARAVKAPKQFDETVARMSASATGPELPELAAGTPKFIHQQVKDMEKLISRIEKEDSYEIFRTELDPIEKLKGTEGAEGDEQNGGDADRSGFAWVTAGRGRRVTSSTAGGGSVGSEEGAPQSSDKKRAGSPVRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEPAAAVAGADVPTPPRRSPSTAVEDAMNVDSEGKADEEGDLAATGRNGVLLK---------------ESQHPVKPKAPPINLPQIRERFVRGCYVPAPGSYLVQSQEAVPARGEASGNQAPLLTSGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVAGASKRSRKRPSFSRSGSSSPPLPSQSPKEEATXXXXXXXXXXXXSGTAVTKTASKASKASKPTGKASSSSLQTRP--TPVLPLTRDSGRLGGAAKLTFDYEPLLDWAGLRADIAGMVGRMVEWAED 519
BLAST of mRNA_P-littoralis_Contig139.90.5 vs. uniprot
Match: A0A7S3LG46_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3LG46_9STRA) HSP 1 Score: 59.3 bits (142), Expect = 6.420e-7 Identity = 27/55 (49.09%), Postives = 38/55 (69.09%), Query Frame = 3
Query: 126 TFAVHQLVKVAQRQWPGVNKEGGDARVLKMNEDGTVAVAYIIGKRSEASVHVKYV 290
+F V +VKV R WPG+NK GG R++K+N+D T VAYI+G R E ++ V Y+
Sbjct: 19 SFKVKDVVKVESRTWPGINKPGGMGRIIKVNDDNTYNVAYILGGR-ELNIPVVYI 72
BLAST of mRNA_P-littoralis_Contig139.90.5 vs. uniprot
Match: A0A1W0A016_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A016_9STRA) HSP 1 Score: 57.0 bits (136), Expect = 7.090e-5 Identity = 29/65 (44.62%), Postives = 39/65 (60.00%), Query Frame = 3
Query: 96 DRSTLNAMVTTFAVHQLVKVAQRQWPGVNKEGGDARVLKMNEDGTVAVAYIIGKRSEASVHVKYV 290
D S N F Q+V+VA R WPG+NK GG A +++ NEDGT V Y++G R E+ V Y+
Sbjct: 136 DTSNENKAAIEFTGGQVVQVAARTWPGINKLGGTAWIVERNEDGTYNVKYVLGGR-ESHVDPAYI 199 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig139.90.5 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig139.90.5 >prot_P-littoralis_Contig139.90.5 ID=prot_P-littoralis_Contig139.90.5|Name=mRNA_P-littoralis_Contig139.90.5|organism=Pylaiella littoralis U1_48|type=polypeptide|length=547bp MVTTFAVHQLVKVAQRQWPGVNKEGGDARVLKMNEDGTVAVAYIIGKRSEback to top mRNA from alignment at P-littoralis_Contig139:334803..338923+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig139.90.5 ID=mRNA_P-littoralis_Contig139.90.5|Name=mRNA_P-littoralis_Contig139.90.5|organism=Pylaiella littoralis U1_48|type=mRNA|length=4121bp|location=Sequence derived from alignment at P-littoralis_Contig139:334803..338923+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig139:334803..338923+ >mRNA_P-littoralis_Contig139.90.5 ID=mRNA_P-littoralis_Contig139.90.5|Name=mRNA_P-littoralis_Contig139.90.5|organism=Pylaiella littoralis U1_48|type=CDS|length=1641bp|location=Sequence derived from alignment at P-littoralis_Contig139:334803..338923+ (Pylaiella littoralis U1_48)back to top |