mRNA_P-littoralis_Contig139.87.3 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig139.87.3
Unique NamemRNA_P-littoralis_Contig139.87.3
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig139.87.3 vs. uniprot
Match: D8LRP5_ECTSI (Cilia- and flagella-associated protein 300 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRP5_ECTSI)

HSP 1 Score: 355 bits (912), Expect = 1.050e-113
Identity = 193/303 (63.70%), Postives = 223/303 (73.60%), Query Frame = 3 
Query:  297 MDRRDPSPPDRIHYNFKLVGEKEDSSLRQKEIKESLRQWGMEDSLTLTQAAFCPAFMPHEATAFVRQLLAFVADKTPDTKNASSHAQNVQMEALKCTAMSLDFFDCLVEKGIVSQSGNIRGCFPEVFGGVTVSDKLRELLVNPDSENADVFSADQQKEVLFHVFRALSVGGGVCQPDDSLQPYTIAAKALYKDLVSVQKNTSTGKLEIAACKVYRITEKE----------SLLDEDSIINRS-----SXXXXXXXXXXXXXASIWNR--AGSSQPSPHSACLVVVDLAKKRASVLRKEYLPFW 1154
            MD +D  P  R+HY+FK+  E  D    QKEIKESLRQWGMED+LTLTQ  FCP FM HE T F+RQLL F+ D     +   +  ++VQ E LKCTAMS+DFF+CL++KGIVS++GN+RGCFP+VF GVTVSDKLRELLVNPDSENAD FS  QQ+E+LFHVFR L+VGGGVCQPDDSL+PYT AAKALYKDLVSVQKN STGKLEIAA KVYR+TE            S  + +S I+ S     +     XXXXXX  +S W    A S   SPHS CLVVVDLAKKRASVLRKE+LPFW
Sbjct:    6 MDGQDVLPSARVHYDFKMTRESGDPFFDQKEIKESLRQWGMEDTLTLTQVQFCPTFMVHEETTFLRQLLTFIVDNPTKPRGTKTSVESVQWERLKCTAMSMDFFNCLIDKGIVSKTGNMRGCFPDVFDGVTVSDKLRELLVNPDSENADAFSPAQQEELLFHVFRVLAVGGGVCQPDDSLEPYTKAAKALYKDLVSVQKNASTGKLEIAASKVYRVTEASTANNHNGNDASKNNPESAISSSEGSNGAVVGSDXXXXXXGMSSFWKGKCAPSESSSPHSTCLVVVDLAKKRASVLRKEFLPFW 308
[Close]
BLAST of mRNA_P-littoralis_Contig139.87.3 vs. uniprot
Match: A0A6H5JLX0_9PHAE (Cilia- and flagella-associated protein 300 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLX0_9PHAE)

HSP 1 Score: 333 bits (855), Expect = 5.830e-105
Identity = 183/325 (56.31%), Postives = 216/325 (66.46%), Query Frame = 3 
Query:  285 AMDPMDRRDPSPPDRIHYNFKLVGEKEDSSLRQKEIKESLRQWGMEDSLTLTQAAFCPAFMPHEATAFVRQLLAFVADKTPDTK------NASSHAQNVQMEALKCTAMSLDFFDCLVEKG------------IVSQSGNIRGCFPEVFGGVTVSDKLRELLVNPDSENADVFSADQQKEVLFHVFRALSVGGGVCQPDDSLQPYTIAAKALYKDLVSVQKNTSTGKLEIAACKVYRITEKESLLDEDSIINRSSXXXXXXXXXXXXXASIWNR-----------------AGSSQPSPHSACLVVVDLAKKRASVLRKEYLPFW 1154
            A D MD +D  P  R+HY+F+L  E  DS   QK+IKE+LRQWG+ED+LTLTQ  FCP FM HE T F+RQLL F+ D     +      +  +  ++VQ E LKCTAMS+DFF+CL++KG            IVS+SGNIRGCFP+VF GVTVSDKLRELLVNPDSENAD FS  QQ+E+LFHVFR L+VGGGVCQPDDSL+PYT AAKALYKDLVSV KN STGKLEIAA KVYR+TE  ++ + +    R +           XX                       A S+  SPHS CLVVVDLAKKRASVL  E+LPFW
Sbjct:    2 AQDSMDGQDMLPSARVHYDFRLTRESGDSFFGQKDIKENLRQWGIEDTLTLTQVQFCPTFMVHEETTFLRQLLTFIVDNPAKPRMEHMMRSTKTSVESVQWERLKCTAMSMDFFNCLIDKGDKEEESKYQGERIVSKSGNIRGCFPDVFDGVTVSDKLRELLVNPDSENADAFSPAQQEELLFHVFRVLAVGGGVCQPDDSLEPYTKAAKALYKDLVSVHKNASTGKLEIAASKVYRVTEASTVTNHNDNDARKTNPEGAISSSEGXXXXXXXXXXXXXXXXXXXXXXXXCAPSNSSSPHSTCLVVVDLAKKRASVLWNEFLPFW 326
[Close]
BLAST of mRNA_P-littoralis_Contig139.87.3 vs. uniprot
Match: A0A8K1FJ99_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FJ99_PYTOL)

HSP 1 Score: 144 bits (363), Expect = 3.870e-35
Identity = 91/269 (33.83%), Postives = 133/269 (49.44%), Query Frame = 3 
Query:  375 LRQKEIKESLRQWGMEDSLTLTQAAFCPAFMPHEATAFVRQLLAFVADKTPDTKNASSHAQ---------NVQMEALKCTAMSLDFFDCLVEKGIVSQSGNIRGCFPEVFGGVTVSDKLRELLVNPDSENADVFSADQQKEVLFHVFRALSVGGGVCQPDDSLQPYTIAAKALYKDLVSVQKNTSTGKLEIAACKVYRITEKESLLDEDSIINRSSXXXXXXXXXXXXXASIWNRAGSSQPSPHSACLVVVDLAKKRASVLRKEYLPFW 1154
            L+  + K+ L QW ++ SL + +  FC      + T     + AF  D      N  SH +         ++    L+CT  SL FFD LV+ G+V+ SG++R C  EV+ G T  D ++E L+NPDSENADVFS ++Q E +F +FRAL +GG +CQ DD++ PY    K  YK LVSV+KNT+             IT    ++++D++                           + PSP   C VV D  K+  +V R  + PFW
Sbjct:   30 LQSTDAKQKLLQWNLDRSLQIFR--FCVNKKITKETE-EETIQAFFRDP-----NVQSHLKLPRQLDNIRDLHCRRLRCTITSLSFFDKLVDAGLVASSGSLRRCMDEVYDGATAGDLVKEALINPDSENADVFSEEEQNEFIFQIFRALVLGGSMCQSDDNIAPYESMTKQFYKSLVSVKKNTADPT-------AIDITSHVYVVEDDALF--------------------------ASPSPFHTCFVVFDPKKRWLTVWRHAFEPFW 257
[Close]
BLAST of mRNA_P-littoralis_Contig139.87.3 vs. uniprot
Match: UPI00193A3BA3 (cilia- and flagella-associated protein 300-like n=1 Tax=Styela clava TaxID=7725 RepID=UPI00193A3BA3)

HSP 1 Score: 132 bits (331), Expect = 9.500e-31
Identity = 82/232 (35.34%), Postives = 131/232 (56.47%), Query Frame = 3 
Query:  336 YNFKLVGEKEDSSLRQKEIKESLRQWGMEDSL------------TLTQAAFCPAFMPHEATAFVRQLLAFVADKTPDTKNASSHAQNVQMEALKCTAMSLDFFDCLVEKGIVSQSGNIRGCFPEVFGGVTVSDKLRELLVNPDSENADVFSADQQKEVLFHVFRALSVGGGVCQPDDSLQPYTIAAKALYKDLVSVQKNTSTGKLEIAACKVYRITEKESLLDEDSIINRSS 995
            + FK++ +K  S+L  K+ K  L +W + D L               +  FC  FM       + Q +      +P     SS    V +E + CT +S+DFF+ L E  IV +SG+I  CF E   G+T+SD+LR++L+  DS N + +S +++ E LF +F  + +GG +CQ +D ++PY    K+LYKD VSVQK++ST +++I + KV++IT K+   +E +II  SS
Sbjct:   11 HKFKVISKKL-STLLNKDFKVYLEKWYLLDRLRAWTFSFDKQFPAYAKDKFCLDFMNDSEVLSIIQCMNTSGSWSPLVTKVSS----VDVEEVPCTQLSMDFFNRLKEYNIVRESGHISKCFDEFHEGITISDELRKMLLLEDSNNFESYSDEERSEFLFRMFSHICIGGSICQYEDMIEPYYEVTKSLYKDCVSVQKDSSTNEIKIVS-KVFKITAKD---EEGTIIYPSS 233
[Close]
BLAST of mRNA_P-littoralis_Contig139.87.3 vs. uniprot
Match: T1EM02_HELRO (Cilia- and flagella-associated protein 300 n=1 Tax=Helobdella robusta TaxID=6412 RepID=T1EM02_HELRO)

HSP 1 Score: 132 bits (331), Expect = 9.740e-31
Identity = 73/224 (32.59%), Postives = 125/224 (55.80%), Query Frame = 3 
Query:  324 DRIHYNFKLVGEKEDSSLRQKEIKESLRQWGMEDSLTLTQAAFCPAFMPHEATAFVRQLLAFVADKTPDT----KNASSHAQ---------NVQMEALKCTAMSLDFFDCLVEKGIVSQSGNIRGCFPEVFGGVTVSDKLRELLVNPDSENADVFSADQQKEVLFHVFRALSVGGGVCQPDDSLQPYTIAAKALYKDLVSVQKNTSTGKLEIAACKVYRITEKE 956
            D++ +NF  +  K   SL  K+ K +L +W M+D + +   +F   +  +    F+         K P+     +  SS+ +         +V +E +  T  S+ FFD L    +V +SGNI  CF E +  + + D+LR++L+  DS+N D++S + +KE LFH+F+   +GG +CQ +D +QPY    ++LYKDL+SVQK+  TG++ +A+  VY+I  K+
Sbjct:    5 DKLTFNFHFLPNKTFESLENKDAKTTLLKWSMKDRIRIQAFSFDQVYQCYSKQQFLEDFF-----KDPEVFCNLQTLSSNGKWVLLGQQIGSVSIEDVSTTKTSMTFFDRLQNDEVVRKSGNIIRCFEEYYDDMIIDDELRKMLLVEDSDNYDLYSKEDRKEFLFHIFKHFCLGGSLCQFEDEMQPYLNMTRSLYKDLISVQKDPKTGQIVVASF-VYKIVAKD 222
[Close]
BLAST of mRNA_P-littoralis_Contig139.87.3 vs. uniprot
Match: A0A7S0HSD8_9EUKA (Cilia- and flagella-associated protein 300 n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0HSD8_9EUKA)

HSP 1 Score: 132 bits (331), Expect = 1.440e-30
Identity = 94/271 (34.69%), Postives = 135/271 (49.82%), Query Frame = 3 
Query:  372 SLRQKEIKESLRQWGMEDSLTLTQAAFCPAFMPHEATAFVRQLL--------AFVADKTPDTKNAS----SHAQNVQMEALKCTAMSLDFFDCLVEKGIVSQSGNIRGCFPEVFGGVTVSDKLRELLVNPDSENADVFSADQQKEVLFHVFRALSVGGGVCQPDDSLQPYTIAAKALYKDLVSVQKNTSTGKLEIAACKVYRITEKESLLDEDSIINRSSXXXXXXXXXXXXXASIWNRAGSSQPSPHSACLVVVDLAKKRASVLRKEYLP 1148
            SL+   +++ L +W ++ ++      F  AF P +  AF+            A VA     T  AS      A  V+ E L  T + LD FD L   GIV +SGNI GC     G V VSD+LR  L++  +E  D FS  Q++E+LFHV R L+VGGG+ Q DD+++PY  A KALYKDLV+VQK  STGKL++ +   Y +TE  ++ D  ++  R+S                          PH+ C V VD  +++       + P
Sbjct:   39 SLQTVPMRDRLVKWNLQPTMVAKAFRFDQAFKPQQLDAFLLDFFNDPEVQEHAPVALPGSGTSGASWGPLGKATAVKKECLAATLLRLDMFDQLEATGIV-RSGNISGCLDAQVGEVLVSDRLRLALLDEAAEEYDAFSTAQRRELLFHVMRRLAVGGGLNQWDDAIEPYLSACKALYKDLVAVQKEASTGKLQVRSL-CYEVTE--AVGDTGALFPRAS--------------------------PHNFCYVCVDPVQRQVKYWYAAWFP 279
[Close]
BLAST of mRNA_P-littoralis_Contig139.87.3 vs. uniprot
Match: UPI0013A5E0F0 (cilia- and flagella-associated protein 300 isoform X2 n=1 Tax=Coturnix japonica TaxID=93934 RepID=UPI0013A5E0F0)

HSP 1 Score: 130 bits (326), Expect = 3.290e-30
Identity = 75/215 (34.88%), Postives = 123/215 (57.21%), Query Frame = 3 
Query:  336 YNFKLVGEKEDSSLRQKEIKESLRQWGMEDSLTLTQAAFCPAFMPHEATAFVRQLLAFVADKTPDTK----NASSH-------AQNVQMEALKCTAMSLDFFDCLVEKGIVSQSGNIRGCFPEVFGGVTVSDKLRELLVNPDSENADVFSADQQKEVLFHVFRALSVGGGVCQPDDSLQPYTIAAKALYKDLVSVQKNTSTGKLEIAACKVYRIT 947
            + F+ + +K    L+ ++I+E L +W M+ S+     +F   F P++   FV   +AF  D+   +     +AS H          ++   + CT  S+ FFD L  +G+V +SG I  C+ E +  + +SD+LR++L+  DS++ D+FS   +KE LF +F+ L +GG +CQ +D L PY    KALYKDLVSVQKN  T ++ I +  V+R++
Sbjct:   12 FAFRPLPQKTFPCLQDRDIQERLLKWSMQGSIAAQAFSFDQQFKPYQKDEFV---MAFFNDQNVISNLKMLSASGHWTALDTKVTKIEATLVPCTQTSMSFFDRLYTEGVVRESGIIVKCYDEYYDDIPISDELRKVLLLEDSDHYDIFSESDRKEFLFCLFKHLCIGGALCQFEDELGPYLETTKALYKDLVSVQKNPETKEISITST-VFRVS 222
[Close]
BLAST of mRNA_P-littoralis_Contig139.87.3 vs. uniprot
Match: A0A7J7IVV3_BUGNE (Cilia- and flagella-associated protein 300 n=1 Tax=Bugula neritina TaxID=10212 RepID=A0A7J7IVV3_BUGNE)

HSP 1 Score: 130 bits (326), Expect = 4.120e-30
Identity = 75/227 (33.04%), Postives = 130/227 (57.27%), Query Frame = 3 
Query:  336 YNFKLVGEKEDSSLRQKEIKESLRQWGMEDSLTLTQAAFCPAFMPHEATAFVRQLLAFVAD------KTPDTKNASSHA-----QNVQMEALKCTAMSLDFFDCLVEKGIVSQSGNIRGCFPEVFGGVTVSDKLRELLVNPDSENADVFSADQQKEVLFHVFRALSVGGGVCQPDDSLQPYTIAAKALYKDLVSVQKNTSTGKLEIAACKVYRITEKESLLDEDSII 983
            ++F+ +  K   SL  K+ K+ L +WGME+ L     +F   F  + A  F      F+++      KT  T   +S+        V++EA+ CTA+S+  F+ L + GIV ++G I+ CF E    V ++D+LR +L+N ++++  +++  +++E LF +F  L VGGGVCQ +D++ PY+   K +YKDLVSVQK   +  L +   +VY++     ++D+D I+
Sbjct:    7 FSFQYLASKPFPSLELKDHKDKLCKWGMENRLFAQTFSFDEEFKSYLAQQFATDF--FLSNDVAKCIKTAGTSGDASYGIALKVTGVELEAIPCTAVSMSMFEKLRDNGIVQENGYIKKCFEEYIENVCIADQLRNVLLNEEADDYHIYNDSEREEFLFRLFTHLCVGGGVCQYEDTVSPYSSLTKLMYKDLVSVQKTPDSQDLHVIT-QVYKV----KVMDDDDIV 226
[Close]
BLAST of mRNA_P-littoralis_Contig139.87.3 vs. uniprot
Match: A0A7L1T191_ARAGA (Cilia- and flagella-associated protein 300 (Fragment) n=5 Tax=Gruiformes TaxID=9108 RepID=A0A7L1T191_ARAGA)

HSP 1 Score: 130 bits (326), Expect = 4.230e-30
Identity = 71/215 (33.02%), Postives = 123/215 (57.21%), Query Frame = 3 
Query:  336 YNFKLVGEKEDSSLRQKEIKESLRQWGMEDSLTLTQAAFCPAFMPHEATAFVRQLLAFVADKTPDTK-----------NASSHAQNVQMEALKCTAMSLDFFDCLVEKGIVSQSGNIRGCFPEVFGGVTVSDKLRELLVNPDSENADVFSADQQKEVLFHVFRALSVGGGVCQPDDSLQPYTIAAKALYKDLVSVQKNTSTGKLEIAACKVYRIT 947
            + F+ + +K  S L  K+I+E L +W M+  +T    +F   F P++   FV   +AF  D+  ++               S    ++   + CT +S+ FFD L  +G+V ++G+I  C+ + +  + +SD+LR++L+  DS++ D+FS   +KE LF +F+ L +GG +CQ +D + PY    KALYKDLVSVQKN  T ++ + +  V+R++
Sbjct:   12 FAFRSLPQKALSCLEDKDIQERLLKWSMQGRITAQAFSFDQQFKPYQKDEFV---MAFFNDQNVNSSLKLLSASGQWTTLGSKVTKIEATVVPCTQISMSFFDRLYSEGVVRETGDIVKCYDDYYDDILISDELRKVLLLEDSDHYDIFSQLDRKEFLFCLFKHLCIGGALCQFEDVVDPYLETTKALYKDLVSVQKNPETKEIHVIST-VFRVS 222
[Close]
BLAST of mRNA_P-littoralis_Contig139.87.3 vs. uniprot
Match: A0A8B9BV57_9AVES (Cilia- and flagella-associated protein 300 n=3 Tax=Anser TaxID=8842 RepID=A0A8B9BV57_9AVES)

HSP 1 Score: 129 bits (323), Expect = 6.260e-30
Identity = 77/224 (34.38%), Postives = 126/224 (56.25%), Query Frame = 3 
Query:  330 IHYNFKLVGEKEDSSLRQKEIKESLRQWGMEDSLTLTQAAFCPAFMPHEATAFVRQLLAFVADKTPDTKNA-------------SSHAQNVQMEALKCTAMSLDFFDCLVEKGIVSQSGNIRGCFPEVFGGVTVSDKLRELLVNPDSENADVFSADQQKEVLFHVFRALSVGGGVCQPDDSLQPYTIAAKALYKDLVSVQKNTSTGKLEIAACKVYRITEKESL 962
            + + F  + +K    L+ ++I++ L +W M   +T    +F   F P++   FV   LAF  D  P+ K++              S    ++   + CT +S+ FFD L  +GIV ++G+I  C+ E +  + +SD+LR++L+  DS++ D+FS   +KE LF +F+ L +GG +CQ +D L PY    KALYKDLVSVQKN  T ++ I +  V+R++   SL
Sbjct:   10 VGFAFCPLPQKAFPCLQDRDIRDRLLKWSMHGRITAQAFSFDQQFKPYQKDEFV---LAFFND--PNVKSSLKLLSPSGQWTTLGSKVTKIEAIVVPCTQISMSFFDRLYTEGIVRETGHIVKCYDEYYDDILISDELRKVLLLEDSDHYDLFSQSDRKEFLFCLFKHLCIGGALCQFEDMLGPYLETTKALYKDLVSVQKNPETKEISITST-VFRVSAYISL 227
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig139.87.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRP5_ECTSI1.050e-11363.70Cilia- and flagella-associated protein 300 n=1 Tax... [more]
A0A6H5JLX0_9PHAE5.830e-10556.31Cilia- and flagella-associated protein 300 n=1 Tax... [more]
A0A8K1FJ99_PYTOL3.870e-3533.83Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
UPI00193A3BA39.500e-3135.34cilia- and flagella-associated protein 300-like n=... [more]
T1EM02_HELRO9.740e-3132.59Cilia- and flagella-associated protein 300 n=1 Tax... [more]
A0A7S0HSD8_9EUKA1.440e-3034.69Cilia- and flagella-associated protein 300 n=1 Tax... [more]
UPI0013A5E0F03.290e-3034.88cilia- and flagella-associated protein 300 isoform... [more]
A0A7J7IVV3_BUGNE4.120e-3033.04Cilia- and flagella-associated protein 300 n=1 Tax... [more]
A0A7L1T191_ARAGA4.230e-3033.02Cilia- and flagella-associated protein 300 (Fragme... [more]
A0A8B9BV57_9AVES6.260e-3034.38Cilia- and flagella-associated protein 300 n=3 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig139contigP-littoralis_Contig139:328761..334681 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LRP5
Preferred nameC11orf70
PFAMsDUF4498
Model size2286
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0000226,GO:0001578,GO:0003352,GO:0003356,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005929,GO:0006996,GO:0007010,GO:0007017,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0030030,GO:0030031,GO:0031514,GO:0032879,GO:0032886,GO:0034622,GO:0035082,GO:0036158,GO:0036159,GO:0040012,GO:0042995,GO:0043226,GO:0043933,GO:0044085,GO:0044424,GO:0044464,GO:0044782,GO:0050789,GO:0050794,GO:0051270,GO:0060271,GO:0060295,GO:0060296,GO:0060632,GO:0065003,GO:0065007,GO:0065008,GO:0070286,GO:0070925,GO:0071840,GO:0120025,GO:0120030,GO:0120031,GO:0120036,GO:1902019,GO:2000145
Exons5
Evalue1.12e-120
EggNOG OGs28MX2@1|root,2QUFH@2759|Eukaryota
Ec32 ortholog descriptionProtein of unknown function DUF4498
Ec32 orthologEc-12_000570.1
DescriptionDomain of unknown function (DUF4498)
Cds size906
COG categoryS
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig139.87.3prot_P-littoralis_Contig139.87.3Pylaiella littoralis U1_48polypeptideP-littoralis_Contig139 329890..334430 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789642.0355997-UTR-P-littoralis_Contig139:328760..3298891680789642.0355997-UTR-P-littoralis_Contig139:328760..329889Pylaiella littoralis U1_48UTRP-littoralis_Contig139 328761..329889 -
1680789642.095965-UTR-P-littoralis_Contig139:334430..3346811680789642.095965-UTR-P-littoralis_Contig139:334430..334681Pylaiella littoralis U1_48UTRP-littoralis_Contig139 334431..334681 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789642.0473635-CDS-P-littoralis_Contig139:329889..3301741680789642.0473635-CDS-P-littoralis_Contig139:329889..330174Pylaiella littoralis U1_48CDSP-littoralis_Contig139 329890..330174 -
1680789642.0580184-CDS-P-littoralis_Contig139:331066..3313111680789642.0580184-CDS-P-littoralis_Contig139:331066..331311Pylaiella littoralis U1_48CDSP-littoralis_Contig139 331067..331311 -
1680789642.0688417-CDS-P-littoralis_Contig139:332392..3324831680789642.0688417-CDS-P-littoralis_Contig139:332392..332483Pylaiella littoralis U1_48CDSP-littoralis_Contig139 332393..332483 -
1680789642.0774806-CDS-P-littoralis_Contig139:333181..3333051680789642.0774806-CDS-P-littoralis_Contig139:333181..333305Pylaiella littoralis U1_48CDSP-littoralis_Contig139 333182..333305 -
1680789642.086343-CDS-P-littoralis_Contig139:334269..3344301680789642.086343-CDS-P-littoralis_Contig139:334269..334430Pylaiella littoralis U1_48CDSP-littoralis_Contig139 334270..334430 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig139.87.3

>prot_P-littoralis_Contig139.87.3 ID=prot_P-littoralis_Contig139.87.3|Name=mRNA_P-littoralis_Contig139.87.3|organism=Pylaiella littoralis U1_48|type=polypeptide|length=302bp
MSNASVRCEVSAMDPMDRRDPSPPDRIHYNFKLVGEKEDSSLRQKEIKES
LRQWGMEDSLTLTQAAFCPAFMPHEATAFVRQLLAFVADKTPDTKNASSH
AQNVQMEALKCTAMSLDFFDCLVEKGIVSQSGNIRGCFPEVFGGVTVSDK
LRELLVNPDSENADVFSADQQKEVLFHVFRALSVGGGVCQPDDSLQPYTI
AAKALYKDLVSVQKNTSTGKLEIAACKVYRITEKESLLDEDSIINRSSKG
GGGGGGIGGGAASIWNRAGSSQPSPHSACLVVVDLAKKRASVLRKEYLPF
W*
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mRNA from alignment at P-littoralis_Contig139:328761..334681-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig139.87.3 ID=mRNA_P-littoralis_Contig139.87.3|Name=mRNA_P-littoralis_Contig139.87.3|organism=Pylaiella littoralis U1_48|type=mRNA|length=5921bp|location=Sequence derived from alignment at P-littoralis_Contig139:328761..334681- (Pylaiella littoralis U1_48)
GTTTGGGATCTTGGGTTGCCCTGCGTATCATCGAGGAGGGCACCGGTGTG
CGTGTGTTTGTGTGTCGATTGTTGTGGCTCAACCACCGGCATCGTGTGCT
ATTCACATTTCCGGTATCCCAAATCTCACGAAGGACCCACAAGAGCATAT
GATCACCTGCGCTGCCTCTCTCCTTTTTCTCGATCGGTAAAGATACTCCA
CTCCGAGTATTTCGCAAACGCGATACAGCGTATCATATCATACGGTAACT
CATGTCAAACGCCTCGGTCCGCTGTGAAGTATCGGCCATGGATCCGATGG
ACCGGCGGGATCCCTCTCCTCCAGACCGTATCCACTACAACTTCAAGCTT
GTGGGCGAGAAGGAGGATTCGAGCTTGCGCCAGAAGGAGATCAAGGAGAG
CCTCCGGCAATGGTGTGAGCGAAGTGTTTTTTTCTGTATCGGGGCAAAGA
GGTCAACTTGGAGATGAAGGGACAAATACTTGAAGGATACGACGAAGTAT
ATACTTCGAGGTGCAACACATCATTCAAGTAATTGGACAAAAAGCAACCC
ATGTTGTGTATACAGCAGTACTGTTGCACGAACCTGTTGTACACAGCAGT
ATCGACCAGCTGACAGGATGAAAGGGTCAACAAGAAGGTGCGGCTGAGAT
TTTGAAGAATCTTAAGAAGAAGTGAGCACTGCACTAAGTTCCACAGACCA
GACACACTCGGGTCTGGCATCACACAGAAAAAAGCCAGGCTGAGCCTGAA
CTGGTTTCTTGTCAGCGGGTCGATACACTGCTGTATGATACCTGGTATAG
TCCCAGCAGAGAGACTGCAAAAAACCACAGCGGCCTTTCACAGCGTTCAG
TGTCGATGTTGTCGGAAAATGGAGGGCGGGGGAATCGATATTAAATGCCA
CGATGTATGCCCGCGACGAGCGGGAACCACGAATTGCCGTGCGGGCACCG
TATGTTGTGTCGGTGGATTTCAAAGTGCGAGGGCAGCGGGCACCATAAGA
ATAACATGCCTCGTGTTTATATTGTCATCACAGTCAGTGTCTCTTGATCT
ACAAAAATGCCGTCGAACGTGACAAGATGACGCAAAATCGACTACAAACA
ACATCGAATTCGACCCATCCGCCCGTTGGGGGGAGGAGGATCCCTCCCCG
GTGGTGCAAACAGAATACATGTGTATTATGTCTACGGTATCATACGTGTG
TGCACAGCATTTTTACATGTTTGTAGGCAGAATATCAGGGCCTTGTAGAC
CTAGACTGGGAAGACCCGACCCAAGGCACGTCGGGGCTTTGTGCTCGCTT
CCCAGCGGATGATAGGGACCGAAATGTTTCGCCTATGATACGGCAACGCA
TCCACCGCTACAAAAATCAACAACAGGGGAATGGAGGATTCACTTACCCT
TACGCAAGCAGCCTTCTGCCCAGCCTTCATGCCGCATGAGGCGACAGCCT
TCGTGCGCCAGCTCCTTGCTTTTGTTGCCGACAAGACGCCCGATACGAAG
GTGAGGAACTGACGTATTACCTGTTAGACGTCACCGTTTTGCCCATTGTC
GAAGACATTCCAAGTTTGGCCTCCGCCCTCGTTGGGTGGCCATTGTACGC
GTGCATCACATGCGAATGACGAATTTCGAGAAACCATCTCTTGTTGTTGG
CACACTTAATGTCTGGTGTCTACTGTGCAAATCCTAGTACACTACCGTGT
TGTCTCGCGTTTTCTTCCTGCATGTACTATTTTGCTGCGGCCATCCCCTC
CGCGCTCTTGCCCCGACAAGGCTGAGACCCGTGACTACATTCCGTCCATC
GTTCAAATGCGGAAAAGTCGAACACATCCCGTCCATGGAGTTTCGAGTCG
CGACCTCTCCTCTGTATCCCATCGTCGCACATACGTGCTGACGTTCGTGC
CCACCACTACTGTAGAATGCCTGAACAGGAATAATTGACGACGCGGCGGC
CGTGTACCGTGAAGATCGAACATCCTCTCGAACAAAGAGTTTATTCACTT
GAGACAAAACACATTATTGATGGTTGGAAAATGATACGCCTCGAGTCACC
AAAACGTATTTCGTTGTTGTACGTGTTACGACAGTGGTGCAGTAGGCGCC
GACTTTACCTTAAATACTGTCGCCGTGACTTCGTTTCGTCCTTGAATAAC
CTGCCCTCCCTTCTGTTGTTTCCTTGATGTCTGGAAATGTTGCCGCAGAA
CGCATCATCTCATGCTCAAAACGTGCAAATGGAAGCCTTGAAGTGCACGG
CCATGTCCTTGGATTTCTTTGACTGCCTCGTCGAGAAAGGTGGGAGGTTC
ACTGAACTATCAGTCAGCGCTGCGCTAATGGGCAGTTCAGTGGATACGCT
GTTTATCTAACAGGGTCAACCGCGAAATATTTCCGAACACAGGGGGAAAA
CACGTGTGTAGTATACGTACACAATACTTTTGTTCATTCCTAATATACTT
CGAGTATTGCCTTATTAAGGAATCAGTCCTGATACCTTTTTCTTACAGCC
CAGGGATTTTTGGTCTGGATTTGTACCCCGTGCCCAAATTAAACCAAGGA
ACCCCCAATCCCGCCCTCCCCATGAACAACCCTGTATTGAGTACAACATG
AGACAGCACCAAGCAGACCCCTGCCTTCTGGGACAATTGGCTGTGGCGAG
GTTCTGGTGGCCGAATATCAGGCTGGGACGACGCTGTTTTTCTTGCCGAA
TGTCCCTGCCTCAACCCACTCCGCCACCAGAACCTCGCACAGCAGGCAAG
GCCCACACCCGCCAAACACTTTCTGTGGCCCACCTCAGAACACTAGAGCA
TATGGTACGATTTAACAGTTTTGGTCTCGAATAGCGTCCCAGGAGGCGAG
ATCTGCTAGGTGCTGTCTCCTGTTGTGCTAAAAAGCAGCGGTTTCAGTCG
TTTGGGCTTTCCGTTTGGGGGGGGGGGGGGCGGGGGGCAATGAAAGAAAA
AAACACCACGGGAATATGAGGGCCGTAAGAAAAAGCCTAACGGTCGATTC
CTTTTCCAACATCCGGGGGGGAGGGGGGTTGAAAAACGTCCCTGTGCGCC
GTGCTCCATAAAGTACAGGTATCATTATCTCAAGTTCAGAAAATAGTTCT
TCGTTCCACTCTGTGCTGTACTGCTTTATCAAAGCTGCATGCGCAGGGGT
GTCTATCGACGAGTGGACACAACACCCTTTTCACCGGATCACACCCTCGC
CCTTTTGTCCTGACTTTTTGCATGCATTTGTGGTATATTTCCGTTTCTGT
GTGTTTATTCTCGCAGCAGAAACGTTTTAATCTCATCAAAGCGAAATTGA
CAGGGACCGACGTGGAAATTTCTGGTCTGAATTTGAGTAACCAATGAACG
TACGTGCATGCATCGATCAGGAATCGTGAGCCAGTCGGGAAACATCCGTG
GTTGCTTCCCCGAAGTTTTCGGGGGGGTGACTGTATCGGACAAGCTACGG
GAGCTCCTCGTCAACCCGGACTCGGAGAACGCGGACGTCTTCTCAGCAGA
CCAGCAGAAGGAGGTCCTCTTCCACGTGTTTCGAGCGCTGAGCGTAGGCG
GAGGAGTTTGTCAGCCAGACGATAGCTTGCAGCCCTACACAATCGCAGCA
AAGGCGTTGTACAAGGTAACTTAGGCACGAGACTGCACATTGTATTGGCC
GTTTTTTGTATATGCGCGTTCTGGTGTAGAAATGGCACTTCTCCTGCTGC
TGCTGTTGTTGTTGATGATGATGATGATACACTGACGATTACGACCCTGT
ACCTCCCTTTTCCGTGCTGATCCAAGCAGCATGAGCTGTCGTGGGGTACT
CAAACGCTAGCACACAGATTTACACACAGGTTGGCACAAGTAGTAGAATG
AATTTAGTGTAAGCATGCATACCCAGATAATCGTTTAGTTTCATCTTTAC
GAGGAAACAGGACGAAAGTATCAGCAACAAGATATAACCAGCAGTACTGT
CTGTACAGCAGTATTTTGAGCCCGATGCTCAGAGCCATGTACCAAACAGA
ACGCGCACACACACATATACACACACCACAAACATGCGGCTGCATGAAAC
ATAGTTAAAATTGAAACCCAAGGAGCCATCCTAATTGCACCTCTTGATCC
TTACCGTTGGGCTGTCCAGGGATATTTTTCCTGACGTCAAATAATGATAC
CTACGGGCACTATCTCTCACGACACTTGAGTTCATAACTTATCGAGAACT
CACATGTGATGCCCTCGTGCCCCTCGTGCTTCGATCCTTCTACAGCGACT
ATTGAAAATAAGGTAACTTTCGAACTGTTGTTATAATCACAAGGAGCAAA
CCCTCACTCTTAGATTTGCTGCGAAGATTCAAACCCCTGTATCACACTGT
GATTGCCCCTCCTACCTAATACTCCCTATTATCCCCCTCTAATCGTTGAC
GTAATATCGTTGATATAAGTAAATATACCTGGTAACATATTATTGCTTAC
CCTCCCCCCCCGCGCCCTCAACCCTGCATCTCCCCTGCCTCTGCCACTCT
CCCGCAGGACCTTGTCTCCGTCCAGAAGAACACAAGCACGGGGAAATTGG
AGATCGCGGCATGCAAGGTTTACCGCATCACCGAGAAGGAGTCACTTCTT
GATGAGGACAGCATCATCAATAGATCCAGCAAGGGTGGTGGTGGTGGTGG
TGGTATTGGTGGTGGTGCCGCCTCAATCTGGAATAGGGCGGGGTCATCAC
AGCCTTCTCCGCACAGTGCCTGCCTTGTCGTGGTCGATCTCGCCAAGAAG
CGCGCTTCCGTGCTACGGAAAGAGTACTTACCGTTCTGGTGATGGTGTGG
GCGGACTACTTAACAGTTTGCAGTATGAAGTATCAAACTGAGGTTTTTCG
TCGGCGTTTTGGCCTCGGCCAGCTATGGCGATGTGCCGAGAGTTTATTTT
CTTCTGGTGCTGCATGTATCAAGTCGCAATCACTTCAGGAAAATAATGTA
CCGACGAGGGCGGTATATGATGCTACGTGCAACGAAACAAATGACATCAA
TGCCGGAGTACCCGACGTCATTTTGCTGATATAAAAAACATTTTGTCGAT
GCCTAAAATTTACGCTGAGGTCATACTTGCGTGTAACAGGCACTGTCCTG
TATATGCTCTGGGCGTACAAACAGGCTGGACCAGCGAAACCGCAGTGAGT
GGTGGCCTAGTGTCATTGTTCGTACTTCGTTTATGCATACCTCTCGAGCC
AAGGGGGTGCACTTGGTTGGTTAAAATCTAAAATCTCTAATGATGTTTTT
TCTAAAATAATATTATCCTGCTTAAATTTTTTAGGGTTTAGCTTTGAGTA
CTGTACATGGCGAAGTACCGAGCTCCACACGACCCCGACATTCGCAAGAA
GACTGCCGCCCCGGCCCTTTCGCTAGGATATGTTTTGCCGCAAATAGAAA
CCCGCCGCTCCATTGTTGGAACGAGAAACGAAGAGATGACGGCGCAACGA
GAAGTACAAGGACCAACAAAAGTAGCAGTAGGAACATGCAGAGTAGCAGC
AAGCAGCGAGGGTGAAACAGTCGGCTTTCCACAGCTGATGAGATACGGGG
CTGAATTGCGATAAGTTGCGAAGGAGCGTTCAAAATTCGACCGGGGTGCA
GGGAGAGGTTCGCGTGTGAGAGATCAGCTCCACCTGCTGTGACGAAGGGG
AGCAGAGCGCTTTTGTTGTGTGTTGGCCGTCATGGGCAAGAGCGCAACAC
AATCCACCACATTCATCGTATATCCATCATCAGAGGGAGAAATCAAGAGA
TTATATTTGAGCCTGTTGTCCTGAGAGGAGAATGATTTTAGAAGTCAAGA
TTCACAATTACCGACCGCCGTGGAGACCGCCGTGGAATTTGACGCCGTCG
GCATTCCACAACAGTCCCGTGGGTGTTCTCTCCCTGGGTATTCGTAGGCA
CCATCCGCAGCAAAAAGCCAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig139:328761..334681-

>mRNA_P-littoralis_Contig139.87.3 ID=mRNA_P-littoralis_Contig139.87.3|Name=mRNA_P-littoralis_Contig139.87.3|organism=Pylaiella littoralis U1_48|type=CDS|length=906bp|location=Sequence derived from alignment at P-littoralis_Contig139:328761..334681- (Pylaiella littoralis U1_48)
ATGTCAAACGCCTCGGTCCGCTGTGAAGTATCGGCCATGGATCCGATGGA
CCGGCGGGATCCCTCTCCTCCAGACCGTATCCACTACAACTTCAAGCTTG
TGGGCGAGAAGGAGGATTCGAGCTTGCGCCAGAAGGAGATCAAGGAGAGC
CTCCGGCAATGGGGAATGGAGGATTCACTTACCCTTACGCAAGCAGCCTT
CTGCCCAGCCTTCATGCCGCATGAGGCGACAGCCTTCGTGCGCCAGCTCC
TTGCTTTTGTTGCCGACAAGACGCCCGATACGAAGAACGCATCATCTCAT
GCTCAAAACGTGCAAATGGAAGCCTTGAAGTGCACGGCCATGTCCTTGGA
TTTCTTTGACTGCCTCGTCGAGAAAGGAATCGTGAGCCAGTCGGGAAACA
TCCGTGGTTGCTTCCCCGAAGTTTTCGGGGGGGTGACTGTATCGGACAAG
CTACGGGAGCTCCTCGTCAACCCGGACTCGGAGAACGCGGACGTCTTCTC
AGCAGACCAGCAGAAGGAGGTCCTCTTCCACGTGTTTCGAGCGCTGAGCG
TAGGCGGAGGAGTTTGTCAGCCAGACGATAGCTTGCAGCCCTACACAATC
GCAGCAAAGGCGTTGTACAAGGACCTTGTCTCCGTCCAGAAGAACACAAG
CACGGGGAAATTGGAGATCGCGGCATGCAAGGTTTACCGCATCACCGAGA
AGGAGTCACTTCTTGATGAGGACAGCATCATCAATAGATCCAGCAAGGGT
GGTGGTGGTGGTGGTGGTATTGGTGGTGGTGCCGCCTCAATCTGGAATAG
GGCGGGGTCATCACAGCCTTCTCCGCACAGTGCCTGCCTTGTCGTGGTCG
ATCTCGCCAAGAAGCGCGCTTCCGTGCTACGGAAAGAGTACTTACCGTTC
TGGTGA
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