prot_P-littoralis_Contig139.75.1 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig139.75.1
Unique Nameprot_P-littoralis_Contig139.75.1
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length472
Homology
BLAST of mRNA_P-littoralis_Contig139.75.1 vs. uniprot
Match: D8LRP1_ECTSI (Letm1 RBD domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRP1_ECTSI)

HSP 1 Score: 581 bits (1497), Expect = 1.630e-203
Identity = 312/477 (65.41%), Postives = 358/477 (75.05%), Query Frame = 0
Query:    1 MRLSDFLVVLNITALAHGSCGTSAAAGWDPKAAASNSRETRSARRVFNSLDQDGHPRRTVAFLGRRPSTATKRTPGESNPEVAVGELPNPAAADAGEVVGS---TDTSADDYAQEPAE-PRVSMAQGLATTVRDFWGNAKDGTVALWANFQISQDIRKRVKAGHAKTYAEHAHLERGATDRRKLLQYVIAYSISPKNFVYVIWYVPGLLPSTFEKPHRVRANYHRLALDRATATLEGLAGLENQLLKADAAFMGKPRRAGSRPVKKMERLEMQREKVVGILEASSKREVFEQFQEHMVVPVPPVPLPEKASXXXXXXXXX------EKLKLPPAARGVPNAAIKALGKGTGLSGWWHVSPGFYVRYCLSERLKDLGRADDVLRTVSLESLDDRDLREACNARAIDVGNRLGGDSDSNELRRSLGEWLELTSPEVAAGKELGPDMVFLPDRARLLGLGLNCLESSRQGRAAELSRKVL 467
            MRLS+FL VLN+ A+A G  GT   AGW  K+AA       S RRVFN   +    R  VAF GRRP T+T R  G S    AV  LP+ + A A  V GS    DTS+     + A  PRVS AQG+  T RDFWG+A+DGT ALW NF+ SQDIRKRVKAGH  TYAEHAHLERGATDRRKLLQY+IAY++SP+NFVYV+WYVPGLLPSTF KPH +R+ YHRLAL+RA+AT + + GLE +LLKA+  F GKPR  GSR  KKME+LE QRE V+ +LEA SKR+VFE+FQEHMVV  P  P PE  +               +KLKLPPA++GVPNA IK LGKGTGLSGWWHVSPGFYVRYCLSERL+DLG+ DDVLRTVSLESL D DLREAC+ARAI+VGNRLGGD +  +LR+SLGEWL+LTSPEVAAG +LGPD VFLPDRARLLGLGLNCLES+RQGR AEL RK L
Sbjct:    1 MRLSEFLSVLNLAAVAQGGHGT---AGWGSKSAA-----VVSDRRVFNDRHRQPQSRSAVAFFGRRPRTSTPRVTGSSEAGSAVDALPDASGAGANGVRGSPAAADTSSXXXXXDSAAAPRVSAAQGIVNTFRDFWGHARDGTFALWGNFKTSQDIRKRVKAGHVMTYAEHAHLERGATDRRKLLQYLIAYAVSPQNFVYVVWYVPGLLPSTFVKPHTIRSKYHRLALERASATWDAVTGLEFRLLKAEEGFKGKPREEGSRQSKKMEKLERQREMVLDVLEADSKRQVFERFQEHMVVSAPASPDPENTAASNNKGTTKSKKPKPQKLKLPPASKGVPNAYIKTLGKGTGLSGWWHVSPGFYVRYCLSERLRDLGKMDDVLRTVSLESLSDSDLREACDARAINVGNRLGGDREPQDLRKSLGEWLDLTSPEVAAGSKLGPDTVFLPDRARLLGLGLNCLESARQGRTAELPRKAL 469          
BLAST of mRNA_P-littoralis_Contig139.75.1 vs. uniprot
Match: A0A6H5L818_9PHAE (LETM1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L818_9PHAE)

HSP 1 Score: 168 bits (426), Expect = 1.500e-46
Identity = 81/108 (75.00%), Postives = 94/108 (87.04%), Query Frame = 0
Query:  326 RGVPNAAIKALGKGTGLSGWWHVSPGFYVRYCLSERLKDLGRADDVLRTVSLESLDDRDLREACNARAIDVGNRLGGDSDSNELRRSLGEWLELTSPEVAAGKELGPD 433
            R VPNA I+ALGKGTGLSGW H+SPGFYVRYCLSERL+DLGR  ++LRTVSLESL D DLREAC+ARAI+VGNRLGGD +  +LR+ LG WL+LTSPEV+AG +L PD
Sbjct:   61 RQVPNAYIEALGKGTGLSGWCHISPGFYVRYCLSERLRDLGRMIEILRTVSLESLSDSDLREACDARAINVGNRLGGDREPQDLRKPLGGWLDLTSPEVSAGSKLDPD 168          
BLAST of mRNA_P-littoralis_Contig139.75.1 vs. uniprot
Match: A0A836CMC6_9STRA (LETM1 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMC6_9STRA)

HSP 1 Score: 134 bits (337), Expect = 8.740e-32
Identity = 105/350 (30.00%), Postives = 156/350 (44.57%), Query Frame = 0
Query:  121 AQGLATTVRDFWGNAKDGTVALWANFQISQDIRKRVKAGHAK--TYAEHAHLERGATDRRKLLQYVIAYSISPKNFVYVIWYVPGLLPSTFEKPHRVRANYHRLALDRATATLEGLAGLENQLLKADAAFMGKPRRAGSRPVKKMERLEMQREKVVGILEASSKREVFEQFQEHMVVPVPPVPLPEKASXXXXXXXXXEKLKLPPAARGVPNAAIKALGKGTGLSGWWHVSPGFYVRYCLSERLKDLGRADDVLRTVSLESLDDRDLREACNARAIDVGNRLGGDSDSNELRRSLGEWLELTSPEVAAGK-ELGPDMVFLPDRARLLGLGLNCLESSRQGRAAELSRKVL 467
            A   A  V+D +   K G    W +FQ  + IR+R++A  A   TY E   L+RG  DR KLLQ  + +   P+   +V+ ++PG++PSTFE        +      R  A L  L  ++ + L  +               KK       RE  V +++A +  + F  F+ H    VP        +          + + P    G+P    K L K  GL   W   P F  R  L E L+ +   D VL    L++L  R+LREA  ARA+D  +      D  ELRR L EWL LT   +     + G + VF+P+RA+   L +N + S+R  R +EL + +L
Sbjct:   17 ANWAADMVKDSFRRFKAGMTGQWDSFQRCKAIRERLRAPGAAPVTYEEFMALQRGKEDRNKLLQVGVVWVAVPEAIPFVLSFLPGVIPSTFENDADRAQRFRNFNAARVRAALALLDTVDKECLNKNE--------------KKRVEFAQYREAAVRVMKAHTCEDAFGVFEAHTFALVP--------ADTDAQQRRRARPRPPTTVEGMPGPLAKGLAKALGLCTPW--MPAFLCRGPLREHLRKVAAGDAVLARTPLDALRGRELREAACARALDAAH-----PDERELRRRLAEWLRLTGAPLGVDDCDAGAERVFVPERAKAAMLAVNVVASARAARESELPKLLL 337          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig139.75.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LRP1_ECTSI1.630e-20365.41Letm1 RBD domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5L818_9PHAE1.500e-4675.00LETM1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A836CMC6_9STRA8.740e-3230.00LETM1 domain-containing protein n=1 Tax=Tribonema ... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011685LETM1-likePFAMPF07766LETM1coord: 334..421
e-value: 6.8E-9
score: 35.4
coord: 135..224
e-value: 1.8E-6
score: 27.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 64..105
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 31..51
IPR033122LETM1, ribosome-binding domainPROSITEPS51758LETM1_RBDcoord: 253..471
score: 8.626042

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig139contigP-littoralis_Contig139:263968..272152 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig139.75.1mRNA_P-littoralis_Contig139.75.1Pylaiella littoralis U1_48mRNAP-littoralis_Contig139 263848..272449 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig139.75.1 ID=prot_P-littoralis_Contig139.75.1|Name=mRNA_P-littoralis_Contig139.75.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=472bp
MRLSDFLVVLNITALAHGSCGTSAAAGWDPKAAASNSRETRSARRVFNSL
DQDGHPRRTVAFLGRRPSTATKRTPGESNPEVAVGELPNPAAADAGEVVG
STDTSADDYAQEPAEPRVSMAQGLATTVRDFWGNAKDGTVALWANFQISQ
DIRKRVKAGHAKTYAEHAHLERGATDRRKLLQYVIAYSISPKNFVYVIWY
VPGLLPSTFEKPHRVRANYHRLALDRATATLEGLAGLENQLLKADAAFMG
KPRRAGSRPVKKMERLEMQREKVVGILEASSKREVFEQFQEHMVVPVPPV
PLPEKASKKRGKKQKQEKLKLPPAARGVPNAAIKALGKGTGLSGWWHVSP
GFYVRYCLSERLKDLGRADDVLRTVSLESLDDRDLREACNARAIDVGNRL
GGDSDSNELRRSLGEWLELTSPEVAAGKELGPDMVFLPDRARLLGLGLNC
LESSRQGRAAELSRKVLLSSW*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011685LETM1-like
IPR033122LETM1_RBD