mRNA_P-littoralis_Contig139.69.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig139.69.1
Unique NamemRNA_P-littoralis_Contig139.69.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig139.69.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig139contigP-littoralis_Contig139:251271..251886 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size178
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size174
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789641.4120836-CDS-P-littoralis_Contig139:251270..2513661680789641.4120836-CDS-P-littoralis_Contig139:251270..251366Pylaiella littoralis U1_48CDSP-littoralis_Contig139 251271..251366 -
1680789641.423888-CDS-P-littoralis_Contig139:251804..2518821680789641.423888-CDS-P-littoralis_Contig139:251804..251882Pylaiella littoralis U1_48CDSP-littoralis_Contig139 251805..251882 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789641.4371421-UTR-P-littoralis_Contig139:251882..2518861680789641.4371421-UTR-P-littoralis_Contig139:251882..251886Pylaiella littoralis U1_48UTRP-littoralis_Contig139 251883..251886 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig139.69.1prot_P-littoralis_Contig139.69.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig139 251271..251882 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig139.69.1

>prot_P-littoralis_Contig139.69.1 ID=prot_P-littoralis_Contig139.69.1|Name=mRNA_P-littoralis_Contig139.69.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=58bp
MERVAFCTKEFPGRHTAEKIEPWLRQVTVDAFGGIVGAEHCEPSNIYISA
TVDQGAT*
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mRNA from alignment at P-littoralis_Contig139:251271..251886-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig139.69.1 ID=mRNA_P-littoralis_Contig139.69.1|Name=mRNA_P-littoralis_Contig139.69.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=616bp|location=Sequence derived from alignment at P-littoralis_Contig139:251271..251886- (Pylaiella littoralis U1_48)
TGGTATGGAGCGTGTGGCGTTCTGCACGAAGGAGTTCCCCGGAAGGCATA
CTGCAGAGAAGATCGAGCCATGGCTTCGACAGGTGACACTCCATGTTATT
TTTTAGGGCTGTGGTGTAATTCTTTGATTTTTTGTTGTTGTTTTCAATAC
GTTGTTTTTGGTGTATGTATCCACCACGCTGTGTGTCCTTGCCTCTACCT
TCCAAAAAACAAAACACGCATTTGGTAAGCTACAAACAAGTCAGGTGTTC
GGCTCAACAACATCGTGTTCGGGTTCGTTTTTGCAAGTTTATTGGTGGCG
CACACATAATGTTGCTCTCTGGGTAGGTTTCATGTGGTGGTGAGTCCGAA
CAACAATGGAGGGAGCGGATAGAGCGCTGCTGTGTCGGCGTGCATGTATT
CGATTTGATGTGTGCGTGTTAGTATTTCGTATTTCTCTTTTGGCCGTGTC
TGTCGCGAGTGTTGAAAGAAAAACAACTGCACTCCCACATTCTTCACCTC
TGCTCGCCGTGCGTGAACAGGTTACCGTTGACGCTTTTGGCGGTATCGTA
GGAGCCGAGCACTGCGAGCCATCAAACATCTACATCTCTGCCACGGTCGA
CCAAGGGGCAACATGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig139:251271..251886-

>mRNA_P-littoralis_Contig139.69.1 ID=mRNA_P-littoralis_Contig139.69.1|Name=mRNA_P-littoralis_Contig139.69.1|organism=Pylaiella littoralis U1_48|type=CDS|length=174bp|location=Sequence derived from alignment at P-littoralis_Contig139:251271..251886- (Pylaiella littoralis U1_48)
ATGGAGCGTGTGGCGTTCTGCACGAAGGAGTTCCCCGGAAGGCATACTGC
AGAGAAGATCGAGCCATGGCTTCGACAGGTTACCGTTGACGCTTTTGGCG
GTATCGTAGGAGCCGAGCACTGCGAGCCATCAAACATCTACATCTCTGCC
ACGGTCGACCAAGGGGCAACATGA
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