mRNA_P-littoralis_Contig139.22.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig139.22.1
Unique NamemRNA_P-littoralis_Contig139.22.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig139.22.1 vs. uniprot
Match: X1WY43_ACYPI (DUF659 domain-containing protein n=2 Tax=Acyrthosiphon pisum TaxID=7029 RepID=X1WY43_ACYPI)

HSP 1 Score: 87.4 bits (215), Expect = 2.040e-17
Identity = 48/177 (27.12%), Postives = 97/177 (54.80%), Query Frame = 1
Query:    1 DKNFRELVYTLMPKANIPTRRDILDRMQLRLKMGLRESVAEMLTG-QYVSMTTDGWTSSTYESYISFTVVYVEDDWKIVTLALSCSKKEGSITEEDLAAFIEAMVKTHGLTGRVLVGTIDYEPSMVNVGRILTERGVFTHLGCACHRLECVTSLVFDAPGVNKTMALARSLVTSLHE 528
            +K FR L+ T+ P   IP+R+ I  R++ ++ +   +S+  ++    Y+S+TTDGWTS+  +SY++FTV Y +D+WK+ ++ LS  + + S T E+L   I  ++++  L  ++   + D   ++ N  ++  ++ ++++  CA H L+       D       +  A  +V S  +
Sbjct:   43 NKGFRSLISTIEPLYTIPSRKSITTRIE-KMYIDKSQSIRNIIENINYISLTTDGWTSTAIDSYLTFTVHYFDDNWKLYSVTLSIEEIQESHTAENLKDSIMNVIESWNLNNKITGISHDNAANISNAVKLFYDQDIYSNR-CAAHTLQLAVKKCLDLNTCRPLLKTASKIVASFRQ 217          
BLAST of mRNA_P-littoralis_Contig139.22.1 vs. uniprot
Match: J9KYL2_ACYPI (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Acyrthosiphon pisum TaxID=7029 RepID=J9KYL2_ACYPI)

HSP 1 Score: 82.4 bits (202), Expect = 3.710e-15
Identity = 46/177 (25.99%), Postives = 96/177 (54.24%), Query Frame = 1
Query:    1 DKNFRELVYTLMPKANIPTRRDILDRMQLRLKMGLRESVAEMLTG-QYVSMTTDGWTSSTYESYISFTVVYVEDDWKIVTLALSCSKKEGSITEEDLAAFIEAMVKTHGLTGRVLVGTIDYEPSMVNVGRILTERGVFTHLGCACHRLECVTSLVFDAPGVNKTMALARSLVTSLHE 528
            +K FR L+ T+ P   IP+R+ I  R++ ++ +   +S+  ++    Y+S+TTDGW+S+  +SY++FT  Y +D+WK+  + LS  + + S T E+L   I  ++++  L  ++   + D   ++ N  ++  ++ ++++  CA H L+       D    +  +  A  +V S  +
Sbjct:   70 NKGFRSLISTIEPLYTIPSRKSITTRIE-KMYIDKSQSIRNIVKNINYISLTTDGWSSTAIDSYLTFTDHYFDDNWKLYGVTLSIEELQESHTTENLKDSIMNVIESWNLNNKITGISHDNAANISNAVKLFYDQDIYSNR-CAAHTLQLAVKKCIDLNTCHPLLKTASKIVASFRQ 244          
BLAST of mRNA_P-littoralis_Contig139.22.1 vs. uniprot
Match: A0A3B3DU20_ORYME (BED-type domain-containing protein n=1 Tax=Oryzias melastigma TaxID=30732 RepID=A0A3B3DU20_ORYME)

HSP 1 Score: 73.9 bits (180), Expect = 3.490e-12
Identity = 50/176 (28.41%), Postives = 79/176 (44.89%), Query Frame = 1
Query:    1 DKNFRELVYTLMPKANIPTRRDILDRMQLRLKMGLRESVAEML-TGQYVSMTTDGWTSSTYESYISFTVVYVEDDWKIVTLALSCSKKEGSITEEDLAAFIEAMVKTHGLTGRVLVGTIDYEPSMVNVGRILTERGVFTHLGCACHRLECVTSLVFDAPGVNKTMALARSLVTSLH 525
            ++ FR L+  L P+  IP+R+   ++M   L    R  V   L T + V +T DGWTS   ESY+ FTV ++ +DW+I +  L     + S T   ++  ++A     GL  +  V   D   +M     +  E   + H+ C  H L   +        V K +A  R + T  H
Sbjct:  130 NEGFRFLINVLEPRFVIPSRKYFAEKMMHALYAKTRAKVESALDTAERVGLTCDGWTSRATESYMMFTVHFINEDWEIESYVLQTRAMQESHTGAHISDVLKAAADEWGLQAKKPVVVTDNASNMC----VAIELTGYQHVRCFAHVLNLASQRALKVASVAKVLAKVRRISTFFH 301          
BLAST of mRNA_P-littoralis_Contig139.22.1 vs. uniprot
Match: A0A224XKI7_9HEMI (Putative hat-25 zm (Fragment) n=1 Tax=Panstrongylus lignarius TaxID=156445 RepID=A0A224XKI7_9HEMI)

HSP 1 Score: 73.6 bits (179), Expect = 4.800e-12
Identity = 42/151 (27.81%), Postives = 78/151 (51.66%), Query Frame = 1
Query:    1 DKNFRELVYTLMPKANIPTRRDILDRMQLRL-KMGLRESVAEMLTGQYVSMTTDGWTSSTYESYISFTVVYVEDDWKIVTLALSCSKKEGSITEEDLAAFIEAMVKTHGLTGRVLVGTIDYEPSMVNVGRILTERGVFTHLGCACHRLECV 450
            D  FR  +  L P   +P R  I   +   L +  L ++  ++LTG+   +TTD WTS+  E+YI  T  ++++++K+ +L L CSK + S   ED+A  ++ + +  G+  ++++   D   +M    + L E   + H GC  H +  +
Sbjct:  135 DTGFRNFISALNPSYELPNRHTISKTLLPALYEECLNDTKKKILTGKSFCITTDSWTSNNTENYIGVTAHFLDENFKLHSLLLECSKTDASHKAEDIAGTLKRITQYWGIDQKIILAVSDNASNMQKAIQQLLE---WKHFGCFAHTINLI 282          
BLAST of mRNA_P-littoralis_Contig139.22.1 vs. uniprot
Match: A0A8C6P794_NOTFU (BED-type domain-containing protein n=2 Tax=Nothobranchius furzeri TaxID=105023 RepID=A0A8C6P794_NOTFU)

HSP 1 Score: 69.7 bits (169), Expect = 9.800e-11
Identity = 55/171 (32.16%), Postives = 84/171 (49.12%), Query Frame = 1
Query:   10 FRELVYTLMPKANIPTRRDILDRMQLRLKMGLRESVAEMLTGQYVSMTTDGWTSSTYESYISFTVVYVEDDWKIVTLALSCSKKEGSITEEDLAAFI-EAMVKTHGLTGRVLVGTIDYEPSMVNVGRILTERGVFTH-LGCACHRLECVTSLVFDAPGVNKTMALARSLVT 516
            FR+L+    P  N+P+   + + +  +    LRE++ E + GQ VS+TTD WTSST E YI+ T  YV D W++    L  +     + E D+A  I + + K     G  +  T+    S +N+   L E  +F H LGC  H L+         P V K +  AR +V+
Sbjct:  122 FRDLLNFFEPGYNVPSYNTLWNAIAHQYD-NLRENIGEEMKGQSVSLTTDLWTSSTMEPYITVTAHYVTDSWQLKARVLCTTM----MPERDMAVNIADRLSKIISEWGIQVFCTVHDNASNMNLAMELCE--MFPHDLGCTGHTLQLAVKAGLVLPEVVKAVDAARRVVS 285          
BLAST of mRNA_P-littoralis_Contig139.22.1 vs. uniprot
Match: A0A8D8YQ75_9HEMI (Zinc finger BED domain-containing protein 1 n=11 Tax=Cacopsylla melanoneura TaxID=428564 RepID=A0A8D8YQ75_9HEMI)

HSP 1 Score: 68.6 bits (166), Expect = 2.770e-10
Identity = 48/167 (28.74%), Postives = 81/167 (48.50%), Query Frame = 1
Query:    1 DKNFRELVYTLMPKANIPTRRDILDRMQLRLKMGLRESVAEMLTGQ--YVSMTTDGWTSSTYESYISFTVVYVE-DDWKIVTLALSCSKKEGSITEEDLAAFIEAMVKTHGLTGRVLVGTIDYEPSMVNVGRILTERGVFTHLGCACHRLECVT--SLVFDAPGVNK 486
            D  F+  V  L P   +PTR+++   M   +     E V   +T    YVS+TTD WTS   ++YI+ TV Y+  ++ ++ +  + C +     T  DL   + ++++  GL G+V+  T D  P +V        +  ++H+GC  H L  +   SLV  +   NK
Sbjct:  415 DVEFQNFVQMLNPAYKLPTRKNLSTLMLPAMYQNTLELVKNEVTANADYVSITTDSWTSIKNQAYIAVTVHYISRENCQLKSYLIGCIQYTNQHTSVDLHQLLCSLIREWGLEGKVVAATTDNAPKLV-----AAVQHSWSHVGCFAHTLNIIVQRSLVAVSTTRNK 576          
BLAST of mRNA_P-littoralis_Contig139.22.1 vs. uniprot
Match: A0A8C6VY88_NOTFU (BED-type domain-containing protein n=1 Tax=Nothobranchius furzeri TaxID=105023 RepID=A0A8C6VY88_NOTFU)

HSP 1 Score: 67.0 bits (162), Expect = 8.740e-10
Identity = 46/139 (33.09%), Postives = 70/139 (50.36%), Query Frame = 1
Query:  103 LRESVAEMLTGQYVSMTTDGWTSSTYESYISFTVVYVEDDWKIVTLALSCSKKEGSITEEDLAAFIEAMVKTHGLTGRVLVGTIDYEPSMVNVGRILTERGVFTH-LGCACHRLECVTSLVFDAPGVNKTMALARSLVT 516
            LRE+++E + GQ VS+TTD WTSST E YI+ T  YV D W++    L  +      T  ++A  +  ++   G+    +  T+    S +N+   L E  +F H LGC  H L+         P V K +  AR +V+
Sbjct:  122 LRENISEEMKGQSVSLTTDLWTSSTMEPYITVTAHYVTDSWQLKARVLCTAMMPERHTAVNIADRLSKIISEWGIQ---VFCTVHDNASNMNLAMELCE--MFPHDLGCTGHTLQLAVKAGLVLPEVVKAVDAARRVVS 255          
BLAST of mRNA_P-littoralis_Contig139.22.1 vs. uniprot
Match: A0A653CQ73_CALMS (Uncharacterized protein n=1 Tax=Callosobruchus maculatus TaxID=64391 RepID=A0A653CQ73_CALMS)

HSP 1 Score: 67.0 bits (162), Expect = 9.510e-10
Identity = 38/151 (25.17%), Postives = 76/151 (50.33%), Query Frame = 1
Query:    1 DKNFRELVYTLMPKANIPTRRDILDRMQLRLKMGLRESVAEML-TGQYVSMTTDGWTSSTYESYISFTVVYVEDDWKIVTLALSCSKKEGSITEEDLAAFIEAMVKTHGLTGRVLVGTIDYEPSMVNVGRILTERGVFTHLGCACHRLECV 450
            D  FR+L+  L P    P+R+     +  +    ++ S+ ++L T +YV++TTD WTS   ES+IS T  ++ ++W   +  L C   E S T ++L+  ++ +     ++ ++   + D   ++V+  +I      + H+ C  H L  +
Sbjct:  467 DSGFRKLILELEPSYKFPSRQTFTQSLLPKKYESVKGSLQKLLQTAEYVTLTTDSWTSRANESFISVTAHFITENWNFYSCLLDCFPYEKSHTAKNLSEEMQRIATEWNISNKIFAVSTDNAANVVSSIKIAG----WCHIPCMAHTLNLI 613          
BLAST of mRNA_P-littoralis_Contig139.22.1 vs. uniprot
Match: UPI002015416C (E3 SUMO-protein ligase ZBED1-like n=1 Tax=Alosa alosa TaxID=278164 RepID=UPI002015416C)

HSP 1 Score: 66.6 bits (161), Expect = 1.160e-9
Identity = 42/146 (28.77%), Postives = 81/146 (55.48%), Query Frame = 1
Query:   10 FRELVYTLMPKANIPTRRDILDRMQLRLKMGLRESVAEMLTGQYVSMTTDGWTSSTYESYISFTVVYVEDDWKIVTLALSCSKKEGSITEEDLAAFIEAMVKTHGLTGR-VLVGTIDYEPSMVNVGRILTERGVFTHLGCACHRLE 444
            F+  V+ L P+  IP  R +  ++  +L    +  + EML G+ +S+TTDGW+S   ESY++ T  ++++DW++  + L  SK + + T E+++  I+++++ + +    VLV T D   + VN   +    G+ T + C  H + 
Sbjct:  130 FQAFVHELEPRFKIPCYRTMNSKIT-KLYDTTKGGIREMLHGEKLSLTTDGWSSLATESYVTVTAHFIDEDWEMRNVVLDTSKLQTAHTAENVSTCIDSILRDYHIEQESVLVITTDNAMNYVNA--VEQHLGI-TDIPCMAHTIN 271          
BLAST of mRNA_P-littoralis_Contig139.22.1 vs. uniprot
Match: J9M006_ACYPI (Uncharacterized protein n=1 Tax=Acyrthosiphon pisum TaxID=7029 RepID=J9M006_ACYPI)

HSP 1 Score: 66.6 bits (161), Expect = 1.250e-9
Identity = 34/130 (26.15%), Postives = 69/130 (53.08%), Query Frame = 1
Query:  139 YVSMTTDGWTSSTYESYISFTVVYVEDDWKIVTLALSCSKKEGSITEEDLAAFIEAMVKTHGLTGRVLVGTIDYEPSMVNVGRILTERGVFTHLGCACHRLECVTSLVFDAPGVNKTMALARSLVTSLHE 528
            Y+S+TTDGW+S+  +SY++FT  Y +D+WK+  + LS  + + S T E+L   I  ++++  L  ++   + D   ++ N  ++  ++ ++++  CA H L+       D       +  A  +V S  +
Sbjct:  472 YISLTTDGWSSTAIDSYLTFTDHYFDDNWKLYGVTLSIEELQESHTTENLKDSIMNVIESWNLNNKITGISHDNAANISNAVKLFYDQDIYSNR-CAAHTLQLAVKKCLDLNTCRPLLKTASKIVASFRQ 600          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig139.22.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
X1WY43_ACYPI2.040e-1727.12DUF659 domain-containing protein n=2 Tax=Acyrthosi... [more]
J9KYL2_ACYPI3.710e-1525.99Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ac... [more]
A0A3B3DU20_ORYME3.490e-1228.41BED-type domain-containing protein n=1 Tax=Oryzias... [more]
A0A224XKI7_9HEMI4.800e-1227.81Putative hat-25 zm (Fragment) n=1 Tax=Panstrongylu... [more]
A0A8C6P794_NOTFU9.800e-1132.16BED-type domain-containing protein n=2 Tax=Nothobr... [more]
A0A8D8YQ75_9HEMI2.770e-1028.74Zinc finger BED domain-containing protein 1 n=11 T... [more]
A0A8C6VY88_NOTFU8.740e-1033.09BED-type domain-containing protein n=1 Tax=Nothobr... [more]
A0A653CQ73_CALMS9.510e-1025.17Uncharacterized protein n=1 Tax=Callosobruchus mac... [more]
UPI002015416C1.160e-928.77E3 SUMO-protein ligase ZBED1-like n=1 Tax=Alosa al... [more]
J9M006_ACYPI1.250e-926.15Uncharacterized protein n=1 Tax=Acyrthosiphon pisu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig139contigP-littoralis_Contig139:90130..90657 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LCS5
PFAMsDUF659,Dimer_Tnp_hAT,zf-BED
Model size528
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.77e-37
EggNOG OGsKOG1121@1|root,KOG1121@2759|Eukaryota
Descriptionprotein dimerization activity
Cds size528
COG categoryE
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789640.7235496-CDS-P-littoralis_Contig139:90129..906571680789640.7235496-CDS-P-littoralis_Contig139:90129..90657Pylaiella littoralis U1_48CDSP-littoralis_Contig139 90130..90657 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig139.22.1prot_P-littoralis_Contig139.22.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig139 90130..90657 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig139.22.1

>prot_P-littoralis_Contig139.22.1 ID=prot_P-littoralis_Contig139.22.1|Name=mRNA_P-littoralis_Contig139.22.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=176bp
DKNFRELVYTLMPKANIPTRRDILDRMQLRLKMGLRESVAEMLTGQYVSM
TTDGWTSSTYESYISFTVVYVEDDWKIVTLALSCSKKEGSITEEDLAAFI
EAMVKTHGLTGRVLVGTIDYEPSMVNVGRILTERGVFTHLGCACHRLECV
TSLVFDAPGVNKTMALARSLVTSLHE
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mRNA from alignment at P-littoralis_Contig139:90130..90657+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig139.22.1 ID=mRNA_P-littoralis_Contig139.22.1|Name=mRNA_P-littoralis_Contig139.22.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=528bp|location=Sequence derived from alignment at P-littoralis_Contig139:90130..90657+ (Pylaiella littoralis U1_48)
GACAAGAACTTTCGAGAGCTGGTGTACACGCTCATGCCCAAGGCGAACAT ACCGACGCGTCGTGACATACTCGACCGGATGCAGCTACGTCTAAAAATGG GCCTGCGAGAGTCGGTCGCCGAAATGCTGACGGGCCAGTACGTCTCCATG ACCACCGACGGATGGACGTCAAGCACCTACGAGTCTTACATCTCCTTCAC CGTCGTGTACGTCGAGGACGACTGGAAGATAGTAACGCTCGCGCTCAGCT GTTCGAAGAAGGAAGGTTCGATAACGGAGGAAGACCTGGCTGCGTTCATC GAGGCCATGGTTAAGACCCACGGCCTCACGGGGCGCGTGCTCGTCGGCAC CATAGACTACGAGCCGTCGATGGTGAACGTGGGTCGCATTCTCACCGAAC GAGGCGTTTTCACGCACCTTGGGTGCGCCTGTCACCGGCTCGAGTGCGTC ACGTCTCTGGTCTTCGACGCGCCCGGCGTGAATAAGACCATGGCTCTAGC TCGCTCGTTGGTGACTTCGCTACACGAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig139:90130..90657+

>mRNA_P-littoralis_Contig139.22.1 ID=mRNA_P-littoralis_Contig139.22.1|Name=mRNA_P-littoralis_Contig139.22.1|organism=Pylaiella littoralis U1_48|type=CDS|length=528bp|location=Sequence derived from alignment at P-littoralis_Contig139:90130..90657+ (Pylaiella littoralis U1_48)
GACAAGAACTTTCGAGAGCTGGTGTACACGCTCATGCCCAAGGCGAACAT
ACCGACGCGTCGTGACATACTCGACCGGATGCAGCTACGTCTAAAAATGG
GCCTGCGAGAGTCGGTCGCCGAAATGCTGACGGGCCAGTACGTCTCCATG
ACCACCGACGGATGGACGTCAAGCACCTACGAGTCTTACATCTCCTTCAC
CGTCGTGTACGTCGAGGACGACTGGAAGATAGTAACGCTCGCGCTCAGCT
GTTCGAAGAAGGAAGGTTCGATAACGGAGGAAGACCTGGCTGCGTTCATC
GAGGCCATGGTTAAGACCCACGGCCTCACGGGGCGCGTGCTCGTCGGCAC
CATAGACTACGAGCCGTCGATGGTGAACGTGGGTCGCATTCTCACCGAAC
GAGGCGTTTTCACGCACCTTGGGTGCGCCTGTCACCGGCTCGAGTGCGTC
ACGTCTCTGGTCTTCGACGCGCCCGGCGTGAATAAGACCATGGCTCTAGC
TCGCTCGTTGGTGACTTCGCTACACGAA
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