mRNA_P-littoralis_Contig139.17.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig139.17.1
Unique NamemRNA_P-littoralis_Contig139.17.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig139.17.1 vs. uniprot
Match: A0A6H5JAU4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU4_9PHAE)

HSP 1 Score: 439 bits (1128), Expect = 6.590e-151
Identity = 205/266 (77.07%), Postives = 232/266 (87.22%), Query Frame = 1
Query:    1 VMACLQVLARGNVFRDIYHMSFISVPTAQATFHSFCRHFAREMYHEHIYLPTGDYQTKVMSEYERLGFTGAIGSTDVTHLAWGCCPYNQARSFTGKEGYPTIAYQVTVDHTKRALAVTPGFTGATNDKTIIRFDKAVTRIRTDPIYTE--YNLYDADGATRQEKGCYLLVDNGYHKWNTLMAPTKYAIEKGDTVFSNRLESSRKDVECYFGIVKGRFRINKLAIPYHKKEDIDNVFFTCCILHNMLHSYDNKGEMGEEPNWAGERG 792
            V+ACLQ+LARGN F DIYHMSFIS+ TA ATFH F R+FAREMY EHI+LPTGDYQ KVM++Y+RLGF+GA GSTDVTH+ WG CPYNQARS+TGKEGYPT+AYQVTVDHTKR LAVTPGFTG+TNDK+IIR+D AVT+IR DPIY+E  + +Y+ADG   Q KGCYLLVDNGYHKW TL+ P+KY I++ D  FS RLES RKDVEC+FGIVKGRFRI KL+IPYHK+EDIDNVFFTCCILHNMLHSYDNK EM EEPNWAG  G
Sbjct:  159 VLACLQILARGNCFADIYHMSFISMQTAAATFHRFTRYFAREMYAEHIFLPTGDYQKKVMTQYDRLGFSGATGSTDVTHIPWGMCPYNQARSYTGKEGYPTVAYQVTVDHTKRVLAVTPGFTGSTNDKSIIRYDTAVTKIREDPIYSEKEFTVYEADGTPYQLKGCYLLVDNGYHKWVTLIPPSKYPIDQNDLAFSKRLESVRKDVECFFGIVKGRFRILKLSIPYHKQEDIDNVFFTCCILHNMLHSYDNKSEMEEEPNWAGNAG 424          
BLAST of mRNA_P-littoralis_Contig139.17.1 vs. uniprot
Match: A0A6H5KY50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY50_9PHAE)

HSP 1 Score: 419 bits (1077), Expect = 2.840e-144
Identity = 193/266 (72.56%), Postives = 227/266 (85.34%), Query Frame = 1
Query:    1 VMACLQVLARGNVFRDIYHMSFISVPTAQATFHSFCRHFAREMYHEHIYLPTGDYQTKVMSEYERLGFTGAIGSTDVTHLAWGCCPYNQARSFTGKEGYPTIAYQVTVDHTKRALAVTPGFTGATNDKTIIRFDKAVTRIRTDPIYTE--YNLYDADGATRQEKGCYLLVDNGYHKWNTLMAPTKYAIEKGDTVFSNRLESSRKDVECYFGIVKGRFRINKLAIPYHKKEDIDNVFFTCCILHNMLHSYDNKGEMGEEPNWAGERG 792
            V+ACLQ+L+RGNVF DIYHMSFIS  T  +TFH FC++FA E+Y E++YLPTG+   KVM +Y+R+GF GA+GSTDVTH+ WG CPYNQAR +TGKEG PT+A+QVTVDH+ R LAVT GFTGATNDKTIIR+DKAVTRIRTDP+YTE  Y LY  DG   +EKGCYLLVDNGYHKW TL+ P+K  I++GD +FS RLES+RKDVECYFGI+KGRFRINKLAI +HK+E IDNVFFTCCILHNMLHS+DN+G+M EEPNWAG  G
Sbjct:   84 VLACLQILSRGNVFADIYHMSFISFQTVASTFHRFCKYFAAELYDEYVYLPTGEDLRKVMEQYDRIGFPGAVGSTDVTHIYWGMCPYNQARIYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGATNDKTIIRYDKAVTRIRTDPVYTEQKYKLYAQDGQQFEEKGCYLLVDNGYHKWRTLIPPSKCPIDRGDLIFSKRLESARKDVECYFGILKGRFRINKLAIGFHKQEYIDNVFFTCCILHNMLHSFDNRGDMSEEPNWAGSAG 349          
BLAST of mRNA_P-littoralis_Contig139.17.1 vs. uniprot
Match: A0A6H5JPH7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPH7_9PHAE)

HSP 1 Score: 419 bits (1077), Expect = 5.860e-143
Identity = 193/266 (72.56%), Postives = 227/266 (85.34%), Query Frame = 1
Query:    1 VMACLQVLARGNVFRDIYHMSFISVPTAQATFHSFCRHFAREMYHEHIYLPTGDYQTKVMSEYERLGFTGAIGSTDVTHLAWGCCPYNQARSFTGKEGYPTIAYQVTVDHTKRALAVTPGFTGATNDKTIIRFDKAVTRIRTDPIYTE--YNLYDADGATRQEKGCYLLVDNGYHKWNTLMAPTKYAIEKGDTVFSNRLESSRKDVECYFGIVKGRFRINKLAIPYHKKEDIDNVFFTCCILHNMLHSYDNKGEMGEEPNWAGERG 792
            V+ACLQ+L+RGNVF DIYHMSFIS  T  +TFH FC++FA E+Y E++YLPTG+   KVM +Y+R+GF GA+GSTDVTH+ WG CPYNQAR +TGKEG PT+A+QVTVDH+ R LAVT GFTGATNDKTIIR+DKAVTRIRTDP+YTE  Y LY  DG   +EKGCYLLVDNGYHKW TL+ P+K  I++GD +FS RLES+RKDVECYFGI+KGRFRINKLAI +HK+E IDNVFFTCCILHNMLHS+DN+G+M EEPNWAG  G
Sbjct:  175 VLACLQILSRGNVFADIYHMSFISFQTVASTFHRFCKYFAAELYDEYVYLPTGEDLRKVMEQYDRIGFPGAVGSTDVTHIYWGMCPYNQARIYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGATNDKTIIRYDKAVTRIRTDPVYTEQKYKLYAQDGQQFEEKGCYLLVDNGYHKWRTLIPPSKCPIDRGDLIFSKRLESARKDVECYFGILKGRFRINKLAIGFHKQEYIDNVFFTCCILHNMLHSFDNRGDMSEEPNWAGSAG 440          
BLAST of mRNA_P-littoralis_Contig139.17.1 vs. uniprot
Match: A0A6H5JBE2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBE2_9PHAE)

HSP 1 Score: 342 bits (878), Expect = 2.090e-113
Identity = 162/265 (61.13%), Postives = 199/265 (75.09%), Query Frame = 1
Query:    1 VMACLQVLARGNVFRDIYHMSFISVPTAQATFHSFCRHFAREMYHEHIYLPTGDYQT--KVMSEYERLGFTGAIGSTDVTHLAWGCCPYNQARSFTGKEGYPTIAYQVTVDHTKRALAVTPGFTGATNDKTIIRFDKAVTRIRTDPIYTE--YNLYDADGATRQEKGCYLLVDNGYHKWNTLMAPTKYAIEKGDTVFSNRLESSRKDVECYFGIVKGRFRINKLAIPYHKKEDIDNVFFTCCILHNMLHSYDNKGEMGEEPNWAG 783
            V+ACL +L RGNVF  IY++S++S PT Q  FH FC HFA EMY EHI+LP+ +     +VM +YE+LGF GA+GSTDVTH+ W  CPYNQ RS+TGKEG PT+ YQVTV+H  R LAVT GFTG+TNDKTII  D+AV RIRTD  Y E  + ++  DG T   KGCYL+VDNGYHKW  L+ P+KY + + D +FS RLES RKDVEC+FGI+K RFRI KLA+ Y K+E +D VFFTCCILHNMLH++D  G + E+ NW G
Sbjct:  128 VLACLTILGRGNVFGSIYNLSWMSTPTVQKVFHQFCEHFATEMYDEHIFLPSEENGELDRVMGQYEKLGFPGAMGSTDVTHIGWSRCPYNQGRSYTGKEGKPTVGYQVTVNHAGRVLAVTEGFTGSTNDKTIICCDEAVDRIRTDKQYAEKPFTVHKKDGTTETLKGCYLIVDNGYHKWRMLIEPSKYPLSEADLLFSKRLESVRKDVECFFGILKMRFRILKLAMTYQKQERLDYVFFTCCILHNMLHTHDGMGGLEEDVNWVG 392          
BLAST of mRNA_P-littoralis_Contig139.17.1 vs. uniprot
Match: A0A6H5JHI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHI0_9PHAE)

HSP 1 Score: 335 bits (858), Expect = 2.830e-111
Identity = 160/269 (59.48%), Postives = 198/269 (73.61%), Query Frame = 1
Query:    1 VMACLQVLARGNVFRDIYHMSFISVPTAQATFHSFCRHFAREMYHEHIYLPT---GDYQTKVMSEYERLGFTGAIGSTDVTHLAWGCCPYNQARSFTGKEGYPTIAYQVTVDHTKRALAVTPGFTGATNDKTIIRFDKAVTRIRTDPIYTE--YNLYDADGATRQEKGCYLLVDNGYHKWNTLMAPTKYAIEKGDTVFSNRLESSRKDVECYFGIVKGRFRINKLAIPYHKKEDIDNVFFTCCILHNMLHSYDNKGEMGEEPNWAGERG 792
            V+A L +L RGN F  IY +S++S  T Q  FH FC+HFAREMY EHIYLP+   G+    VM +Y+RLGF+GA+GS DVTH+ W  CPYN ARS+TGKEG PT+ YQVTV+H  RA+AVT GFT +TNDKT + +D  V +IRTD  YTE  +++Y+ DG T   KGCYLLVDNGYHKW  LM PTKY + + D +FS RLES RKDVEC+FGI+KG FRI K+A+ YH++E IDNVFFTCCILHNMLH++D   ++ E   W    G
Sbjct:   99 VLAWLTILGRGNCFASIYQVSWMSAKTVQTMFHKFCKHFAREMYDEHIYLPSEQNGELD-HVMKQYDRLGFSGAMGSMDVTHIGWSKCPYNLARSYTGKEGVPTVGYQVTVNHAGRAIAVTEGFTDSTNDKTTVCWDAVVEKIRTDNQYTEKTFDVYNEDGTTTTLKGCYLLVDNGYHKWKILMEPTKYPLSENDILFSKRLESVRKDVECFFGILKGCFRIQKVAMAYHEQERIDNVFFTCCILHNMLHTFDGMDQLVENTLWVSSAG 366          
BLAST of mRNA_P-littoralis_Contig139.17.1 vs. uniprot
Match: A0A6H5KNX4_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNX4_9PHAE)

HSP 1 Score: 332 bits (852), Expect = 1.050e-109
Identity = 166/296 (56.08%), Postives = 200/296 (67.57%), Query Frame = 1
Query:    1 VMACLQVLARGNVFRDIYHMSFISVPTAQATFHSFCRHFAREMYHEHIYLPTGDYQT--KVMSEYERLGFTGAIGSTDVTHLAWGCCPYNQARSFTGKEGYPTIAYQVTVDHTKRALAVTPGFTGATNDKTIIRFDKAVTRIRTDPIYTE------------------------------YNLYDADGATRQEKGCYLLVDNGYHKWNTLMAPTKYAIEKGDTVFSNRLESSRKDVECYFGIVKGRFRINKLAIPYHKKEDIDNVFFTCCILHNMLHSYDNKGEMGEEPNWAGERG 792
            V+A L +L RGN F  IY MS++S  T Q  FH FCRHFAREMY E I+LPT +      VM +Y+RLGFTGA+GS DVTH+AW  CPYNQARS+TGKEG+PTIAYQVTVDH  RA+AVT GFTG+TNDKTI+ +D AV +I TD  YT                               +++Y+ DG T   KGCYLLVDNGYHKW  L+ P+KY + + D +FS RLES RKDVEC+FGI+KGRFRI KLA+ Y  +E IDNVFFTC ILHNMLH++D   ++ E  NW    G
Sbjct:   86 VLAWLTILGRGNCFASIYQMSWMSAKTVQGMFHKFCRHFAREMYDEQIHLPTEESGKLDHVMKQYDRLGFTGAVGSMDVTHIAWSRCPYNQARSYTGKEGFPTIAYQVTVDHAGRAIAVTEGFTGSTNDKTIVCWDTAVEKIWTDKHYTXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKTFDVYNEDGTTTTLKGCYLLVDNGYHKWQILIEPSKYPLSENDLLFSKRLESVRKDVECFFGILKGRFRILKLAMEYQSQERIDNVFFTCYILHNMLHTFDGMDQLVENTNWVSSAG 381          
BLAST of mRNA_P-littoralis_Contig139.17.1 vs. uniprot
Match: A0A6H5K796_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K796_9PHAE)

HSP 1 Score: 314 bits (804), Expect = 2.110e-103
Identity = 154/261 (59.00%), Postives = 182/261 (69.73%), Query Frame = 1
Query:   16 QVLARGNVFRDIYHMSFISVPTAQATFHSFCRHFAREMYHEHIYLPTGDYQTKVMSEYERLGFTGAIGSTDVTHLAWGCCPYNQARSFTGKEGYPTIAYQVTVDHTKRALAVTPGFTGATNDKTIIRFDKAVTRIRTDPIYTE--YNLYDADGATRQEKGCYLLVDNGYHKWNTLMAPTKYAIEKGDTVFSNRLESSRKDVECYFGIVKGRFRINKLAIPYHKKEDIDNVFFTCCILHNMLHSYDNKGEMGEEPNWAGERG 792
            QVL +GN F D+  +S +S   AQ TFH FCRHFA EM+ EHIYLPTG Y  +VM  + +LG+TGA GSTDVTH+ W  CP+   RSFTGKEG+PTIAY VTVDH  R LAVT GFTGATNDKTIIR+D  V +IRT   YTE  Y L  A+G  R  +GC+L+VDNGYH+W TL+AP+KY     DT FS  LES RKDV C        FRI KL +PYHK+E +DN+FFTCCILHNMLH++D      E  +W G  G
Sbjct:   42 QVLGKGNCFDDVEQLSKMSKSMAQPTFHKFCRHFAAEMFDEHIYLPTGTYLDEVMGIFHQLGWTGACGSTDVTHIGWNMCPFTLGRSFTGKEGFPTIAYDVTVDHDGRDLAVTNGFTGATNDKTIIRYDSGVNKIRTASQYTEREYKLRKANGTKRMRRGCFLIVDNGYHEWVTLIAPSKYPQRNEDTAFSRDLESVRKDVGC--------FRILKLRMPYHKREYVDNIFFTCCILHNMLHTFDGLDVFEENTDWTGSAG 294          
BLAST of mRNA_P-littoralis_Contig139.17.1 vs. uniprot
Match: A0A6H5JTC6_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTC6_9PHAE)

HSP 1 Score: 302 bits (774), Expect = 1.100e-100
Identity = 141/182 (77.47%), Postives = 158/182 (86.81%), Query Frame = 1
Query:  253 CPYNQARSFTGKEGYPTIAYQVTVDHTKRALAVTPGFTGATNDKTIIRFDKAVTRIRTDPIYTE--YNLYDADGATRQEKGCYLLVDNGYHKWNTLMAPTKYAIEKGDTVFSNRLESSRKDVECYFGIVKGRFRINKLAIPYHKKEDIDNVFFTCCILHNMLHSYDNKGEMGEEPNWAGERG 792
            CPYNQARS+TGKEGYPT+AYQVTVDHTKR LAVTPGFTG+TNDK+IIR+D AVT+IR DPIY+E  + +Y+ADG   Q KGCYLLVDNGYHKW TL+ P+KY I++ D  FS RLES RKDVEC+FGIVKG FRI KL+IPYHK+EDIDNVFFTCCILHNMLHSYDNK EM EEPNWAG  G
Sbjct:    2 CPYNQARSYTGKEGYPTVAYQVTVDHTKRVLAVTPGFTGSTNDKSIIRYDTAVTKIREDPIYSEKEFTVYEADGTPYQLKGCYLLVDNGYHKWVTLIPPSKYPIDQNDLAFSKRLESVRKDVECFFGIVKGLFRILKLSIPYHKQEDIDNVFFTCCILHNMLHSYDNKSEMEEEPNWAGNAG 183          
BLAST of mRNA_P-littoralis_Contig139.17.1 vs. uniprot
Match: A0A6H5JUX7_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUX7_9PHAE)

HSP 1 Score: 302 bits (774), Expect = 2.030e-99
Identity = 151/268 (56.34%), Postives = 185/268 (69.03%), Query Frame = 1
Query:    1 VMACLQVLARGNVFRDIYHMSFISVPTAQATFHSFCRHFAREMYHEHIYLPTGDYQT--KVMSEYERLGFTGAIGSTDVTHLAWGCCPYNQARSFTGKEGYPTIAYQVTVDHTKRALAVTPGFTGATNDKTIIRFDKAVTRIRTDPIYTE--YNLYDADGATRQEKGCYLLVDNGYHKWNTLMAPTKYAIEKGDTVFSNRLESSRKDVECYFGIVKGRFRINKLAIPYHKKEDIDNVFFTCCILHNMLHSYDNKGEMGEEPNWAGERG 792
            V+A L +L +GN F  I+ MS++S  T Q  FH FCR FAREMY EHI+LP  +      VM +Y+RLG                 CPYNQARS+TGK+ +PTIAYQVTVDH  RA+AVT GFTG+TNDKTI+ +D AV +IRTD  YTE  ++LY+ DG T   KGCY L DNGYHKW  L+ P+KY + + D +FS RLES RKDVEC+FGI+KGRFRI KLA+ Y  +E IDNVFFTCCILHNMLH++D   ++ E  NW    G
Sbjct:   21 VLAWLTILGKGNCFASIFQMSWMSAKTVQGVFHKFCRLFAREMYDEHIHLPAEESGKLHHVMKQYDRLG-----------------CPYNQARSYTGKDWFPTIAYQVTVDHASRAIAVTEGFTGSTNDKTIVCWDAAVDKIRTDKQYTEKTFDLYNEDGTTTTLKGCYFLDDNGYHKWQILIEPSKYPLSEDDLLFSKRLESVRKDVECFFGILKGRFRILKLAMAYQSQERIDNVFFTCCILHNMLHTFDGMDQLVENTNWVSSAG 271          
BLAST of mRNA_P-littoralis_Contig139.17.1 vs. uniprot
Match: D7FSK2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSK2_ECTSI)

HSP 1 Score: 291 bits (744), Expect = 2.130e-95
Identity = 138/226 (61.06%), Postives = 171/226 (75.66%), Query Frame = 1
Query:  127 MYHEHIYLPTGDYQTK--VMSEYERLGFTGAIGSTDVTHLAWGCCPYNQARSFTGKEGYPTIAYQVTVDHTKRALAVTPGFTGATNDKTIIRFDKAVTRIRTDPIYTE--YNLYDADGATRQEKGCYLLVDNGYHKWNTLMAPTKYAIEKGDTVFSNRLESSRKDVECYFGIVKGRFRINKLAIPYHKKEDIDNVFFTCCILHNMLHSYDNKGEMGEEPNWAGERG 792
            MY EHI+LPT +      V+ +Y+RLGFTGA+GS DVTH+AW  CPYNQARS+TGKEG+PTI YQVTVDH  RA+AVT GFTG+TNDKT + +D AV +IRTD  YTE  +++Y+ DG T   KGCY+LVDNGYHKW  L+ P+KY + + D +FS RLES RKDVEC+FGI+KGR RI  LA+ +  +E IDNVFFTCCILHNMLH++D   ++ E  NW    G
Sbjct:    1 MYDEHIHLPTEESGKLDLVIEQYDRLGFTGAMGSMDVTHIAWSRCPYNQARSYTGKEGFPTIGYQVTVDHAGRAIAVTEGFTGSTNDKTTVCWDAAVEKIRTDKQYTEKTFDVYNQDGTTTTLKGCYVLVDNGYHKWQILIEPSKYPLSENDLLFSKRLESVRKDVECFFGILKGRLRILMLAMAFQSQERIDNVFFTCCILHNMLHTFDGMDQLVENTNWVSSAG 226          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig139.17.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JAU4_9PHAE6.590e-15177.07Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KY50_9PHAE2.840e-14472.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPH7_9PHAE5.860e-14372.56Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBE2_9PHAE2.090e-11361.13Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHI0_9PHAE2.830e-11159.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNX4_9PHAE1.050e-10956.08DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5K796_9PHAE2.110e-10359.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTC6_9PHAE1.100e-10077.47DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JUX7_9PHAE2.030e-9956.34DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
D7FSK2_ECTSI2.130e-9561.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig139contigP-littoralis_Contig139:53814..55194 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FSK2
PFAMsPlant_tran
Model size795
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue3.36e-96
EggNOG OGs2E2RF@1|root,2S9YA@2759|Eukaryota
DescriptionPlant transposon protein
Cds size792
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789640.6687515-UTR-P-littoralis_Contig139:53813..538161680789640.6687515-UTR-P-littoralis_Contig139:53813..53816Pylaiella littoralis U1_48UTRP-littoralis_Contig139 53814..53816 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789640.6785753-CDS-P-littoralis_Contig139:53816..543351680789640.6785753-CDS-P-littoralis_Contig139:53816..54335Pylaiella littoralis U1_48CDSP-littoralis_Contig139 53817..54335 +
1680789640.6868026-CDS-P-littoralis_Contig139:54921..551941680789640.6868026-CDS-P-littoralis_Contig139:54921..55194Pylaiella littoralis U1_48CDSP-littoralis_Contig139 54922..55194 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig139.17.1prot_P-littoralis_Contig139.17.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig139 53817..55194 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig139.17.1

>prot_P-littoralis_Contig139.17.1 ID=prot_P-littoralis_Contig139.17.1|Name=mRNA_P-littoralis_Contig139.17.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=264bp
MACLQVLARGNVFRDIYHMSFISVPTAQATFHSFCRHFAREMYHEHIYLP
TGDYQTKVMSEYERLGFTGAIGSTDVTHLAWGCCPYNQARSFTGKEGYPT
IAYQVTVDHTKRALAVTPGFTGATNDKTIIRFDKAVTRIRTDPIYTEYNL
YDADGATRQEKGCYLLVDNGYHKWNTLMAPTKYAIEKGDTVFSNRLESSR
KDVECYFGIVKGRFRINKLAIPYHKKEDIDNVFFTCCILHNMLHSYDNKG
EMGEEPNWAGERGP
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mRNA from alignment at P-littoralis_Contig139:53814..55194+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig139.17.1 ID=mRNA_P-littoralis_Contig139.17.1|Name=mRNA_P-littoralis_Contig139.17.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1381bp|location=Sequence derived from alignment at P-littoralis_Contig139:53814..55194+ (Pylaiella littoralis U1_48)
GTCATGGCTTGCCTGCAGGTGCTGGCCAGGGGGAACGTCTTTCGAGACAT CTACCACATGTCTTTCATTAGCGTGCCGACAGCTCAGGCGACCTTCCACA GCTTCTGCAGGCACTTCGCCAGAGAGATGTACCACGAACACATCTATCTA CCGACAGGAGATTATCAGACGAAGGTCATGAGCGAGTACGAGCGCCTTGG CTTCACAGGCGCGATCGGGTCTACGGATGTCACCCACCTCGCGTGGGGCT GTTGCCCCTACAACCAAGCCCGTTCTTTCACAGGAAAAGAAGGGTATCCT ACCATCGCATATCAAGTGACCGTCGATCACACTAAACGCGCGTTGGCAGT GACACCGGGCTTCACGGGCGCGACGAATGACAAGACGATCATCCGTTTCG ACAAAGCTGTCACCCGGATCCGGACCGACCCGATCTACACCGAGTACAAC CTCTACGACGCGGACGGGGCGACACGCCAGGAGAAGGGGTGCTACTTGCT GGTGGACAATGGGTATCACAAGGTTGGTTGTTGCCGAAAGAGAAGGTTTG ATTTTGTTGTGCCACCTTATACGTTGGAAGAACAAGCTACCTTGGCCCTT TTGTGACTGAGCCACGAAAAAGATCCTGTGCAAGTCCTATGTCTTCGATT CGCTTTTTCGCGAAAGGAAAGCTGGTACGCGACGCGTAGCTCCGAAGCAT TCGTGAAGATGAACTTTTGATCTTTCACGCTCGTATGCGAGCCTGTGCCT GCATATTTCGGGCATCTTTCGGGCAGTGGTGGTATGCCGAGCTGTGTGTA GCCTCTGTCGTTTTCAGTGGGGATAATCTTTGTGCAAGGCGGTGTGTTGG TGTGGATGTATGTATGGATAATCAGGGTCGGGTTCGCAGAGGAACGTGCC GCCCTAGGATTAAGGTTCCGGGCCAAAGTCCGTCGCTAAACCCCTGTCAC CAACAGGTTAACTCGATAGTTAATGTGCGTTCATCATCGCCAGCATAAAC GGGCGGGCGCGTTCGTGGAACGTATCCAAGACCGTATTCCATCCGCCAAC AGCCTCCAAGCCCCCCCCTTCCTCCCCTCCCCCCCCCCCACCGCCGTCGT CTTCGCAGTGGAACACTCTCATGGCCCCAACAAAGTACGCAATAGAGAAG GGCGATACGGTGTTCTCCAACAGACTGGAGAGCTCGCGCAAGGATGTGGA GTGCTATTTTGGCATCGTGAAAGGCCGCTTCCGCATCAACAAGCTAGCGA TCCCGTACCACAAGAAGGAAGACATCGACAACGTTTTCTTCACCTGCTGC ATCCTCCACAACATGCTGCACAGCTACGACAACAAGGGCGAGATGGGTGA GGAACCCAACTGGGCAGGGGAGCGCGGGCCT
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Coding sequence (CDS) from alignment at P-littoralis_Contig139:53814..55194+

>mRNA_P-littoralis_Contig139.17.1 ID=mRNA_P-littoralis_Contig139.17.1|Name=mRNA_P-littoralis_Contig139.17.1|organism=Pylaiella littoralis U1_48|type=CDS|length=792bp|location=Sequence derived from alignment at P-littoralis_Contig139:53814..55194+ (Pylaiella littoralis U1_48)
ATGGCTTGCCTGCAGGTGCTGGCCAGGGGGAACGTCTTTCGAGACATCTA
CCACATGTCTTTCATTAGCGTGCCGACAGCTCAGGCGACCTTCCACAGCT
TCTGCAGGCACTTCGCCAGAGAGATGTACCACGAACACATCTATCTACCG
ACAGGAGATTATCAGACGAAGGTCATGAGCGAGTACGAGCGCCTTGGCTT
CACAGGCGCGATCGGGTCTACGGATGTCACCCACCTCGCGTGGGGCTGTT
GCCCCTACAACCAAGCCCGTTCTTTCACAGGAAAAGAAGGGTATCCTACC
ATCGCATATCAAGTGACCGTCGATCACACTAAACGCGCGTTGGCAGTGAC
ACCGGGCTTCACGGGCGCGACGAATGACAAGACGATCATCCGTTTCGACA
AAGCTGTCACCCGGATCCGGACCGACCCGATCTACACCGAGTACAACCTC
TACGACGCGGACGGGGCGACACGCCAGGAGAAGGGGTGCTACTTGCTGGT
GGACAATGGGTATCACAAGTGGAACACTCTCATGGCCCCAACAAAGTACG
CAATAGAGAAGGGCGATACGGTGTTCTCCAACAGACTGGAGAGCTCGCGC
AAGGATGTGGAGTGCTATTTTGGCATCGTGAAAGGCCGCTTCCGCATCAA
CAAGCTAGCGATCCCGTACCACAAGAAGGAAGACATCGACAACGTTTTCT
TCACCTGCTGCATCCTCCACAACATGCTGCACAGCTACGACAACAAGGGC
GAGATGGGTGAGGAACCCAACTGGGCAGGGGAGCGCGGGCCT
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