mRNA_P-littoralis_Contig139.11.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig139.11.1
Unique NamemRNA_P-littoralis_Contig139.11.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig139.11.1 vs. uniprot
Match: A0A6H5JBV2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBV2_9PHAE)

HSP 1 Score: 170 bits (431), Expect = 3.240e-41
Identity = 159/585 (27.18%), Postives = 268/585 (45.81%), Query Frame = 2 
Query:   23 TFFASGKGATHRRDYLRVNGGELSMESDICNACWLFFRNNGGSVKTTAAAYAS-YVESSSPGGGE----SANAERCVALELLEHLRSGKMVSLHECMSWVHAERERVGLRAAGE-----RHLTRIAHDIFKDLADNVEGTTAARFSGSELVDLFNADGRRSYVYLAPTVLDLAYVVQIDLNLKHLEELEKDRRQSAERHVDGAGDASGGVTSA--------QTKDLEVVKRAGIIVHDAIVK-SPLNLGTRSSI-----ATQLDTNIPDALEYIREDFPPE-FSTLLAYCSGKEYLVSEAATNQQEPSGSEETGVAGNTEGQSTDAVMVYFWGTAIIKAVLGSRYIPPHYLKLSQVFKVSGVGAWASSLLSRIGLMCSDSQRWTAEDRRAKTTRDKDLITCDARVPVSVAWDNCDTDATAKYESAVHNGQIAATVNVLRVKAGGSVSLSPAESWRPATQVTFEEIQEGLPLDDHEKTITDFGNLLLEAVARSRSQGRMEGGEQTCVEAELRKLMTAIDVEVDSQLTFVMAGLTKRDGDCEDALNRV---ARVVHAGTYGERVL------VVVEGDEETHSFMVNL 1675
            ++F SG+ +    D    +G +L++ SDICN C++   NN   +   A       +E   P   E    +A A     L +L  L+    V++ + +  V A+R   GL    E     + L +IA DI   + + V       + G E+      DGR    ++ P V+   YVV  D  ++ LE + +  RQ ++   DG GDA G  T+A        +   LE  + AG  V ++I    P +  T +S        +L+ ++   +EY++   PP+ F+ L+A C  KE    E     +             +  +  DA ++YF  T I +AV+ ++++PPH+LKLSQ  K  GVG    SLL+ + +   D  RW  E+    T  DKDL+    ++    A+DN D  A   ++   +   +AAT +V +   GG   L P  SW P T++T E ++ G     H++ + ++   L + +  S       G  Q+C+E EL+K+ +     ++++  F+  G +K   D   A+ R+   A V+      E V+      V +EGD+ET + M+ +
Sbjct:    7 SWFRSGRSSV---DAFLNSGEDLTLLSDICNRCFMEGYNNKARIPPDARPTTKELLEHLRPRAAEKKHQAAAAFHEAMLSVLRILQESVPVAVEDAIEIVAAKRRECGLSVPVEGVQKDKGLRQIAVDILTSVGNGVTDAYYVSYEGHEI----GVDGRTLVHFVMPKVISHKYVVCTDRKVRQLETVAEKVRQESQMS-DGPGDADGTPTAAGGASSADGEKAKLESTRAAGQDVCESIKAWGPWSGETWASTFDLRKTQELEVDVVPPVEYLKTFCPPQLFTLLMAVCGWKEDRFDEQEGRDK------------MSRQERGDAGLMYFLATMIGRAVMRTKFMPPHFLKLSQALKQWGVGQKPMSLLASLNICYGDWVRWDRENC-LPTVNDKDLMPKGGQM--MCAYDNTDVKAEKMFDGGKYIAFLAATAHVAK---GGGAVLGPESSWLPETELTVELVRYGPDKAAHDRVVDEWMQTLWDVLEGSSEYLSTPGPGQSCLEVELQKVTSPAVQNMENRTAFIQRGSSKSTQDNAAAIERIRVQAGVLSRKEKAEGVIPDAAQRVAIEGDQETFAIMIKV 565
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BLAST of mRNA_P-littoralis_Contig139.11.1 vs. uniprot
Match: A0A6H5K2D4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2D4_9PHAE)

HSP 1 Score: 142 bits (359), Expect = 4.860e-32
Identity = 145/529 (27.41%), Postives = 226/529 (42.72%), Query Frame = 2 
Query:  221 NAERCVALELLEHLRSGKMVSLHECMSWVHAERERVGLRAAGE-RHLTRIAHDIFKDLADNVEGTTAARFSGSELVDLFN-ADGRRSYVYLAPTVLDLAYVVQIDLNLKHLEELEKDRRQSAERHVDGAGDASGGVTSAQTKDLEVVKRAGIIVHDAIVKSPLNLGTRSSIATQLDTNIPDALEYIREDFPPEFSTLL-AYCSGKEYLVSEAATNQQEPSGSEETGVAGNTEGQSTDAVMVYFWGTAIIKAVLGSRYIPPHYLKLSQVFKVSGVGAWASSLLSRIGLMCSDSQRWTAEDRRAKTTRDKDLITCDARVPVSVAWDNCDTDATAKYESAVHNGQIAATVNVLRVKAGGSVSLSPAESWRPATQVTFEEIQEGLPLDDHEKTITDFGNLLLEAVARSRSQGRMEGGEQTCVEAELRKLMTAIDVEVDSQLTFVMAGLTKRDGDCEDALNRVARVVHAGTY-------GERV-----LVVVEGDEETHSFMVNLKRSQPTKYEWLLPVPGAWHLLLHASKALI 1762
            NA     L LL  L++G++VSL + +  + A+R  VG+ A  E + L  +  +  K++ + +  +    +  +   D  N +D RR    + P   +  YV  + L  +      KD+R       D A    G   S       + +      ++A+ K           A  + TN+ D + +++E  PP    LL A C          A + +E    EE      T   + + V  Y   T + +AV    + PPH+LKLSQ  K  GVGA   S L+ I L   D  RW  E+   K   D DL+T D R  + ++ DN D D TA++ +A H     A          G   + P                 G PL   E    D G+  +         G+     ++C+E  +R+ +        S+  ++  G TK + D   AL+R+    +  T         E V     +V+VEGD+ET+SFMV  K+++P   +WL+P PG WH+LLHASKAL+
Sbjct:   40 NAVHATMLSLLWRLQNGELVSLDDGIDTLTAKRSDVGIPAPTENKGLVSLKKN--KEMLEALGASVHNAYYTTLDADEINISDDRRVMHVVMPVHFNPRYVANLHLGCQA-----KDKRIVELEDEDSAAKQRGSGVSGADAVPPLPEPGDDAEYEAVRK-----------ADDIRTNVQDPVAFLKESCPPTLLCLLMAVCGWDPRRFDVPARDGEEWENFEELQF---TRRSTRENVFAYMVVTMLGRAVHKDEFRPPHFLKLSQALKYWGVGAKPMSFLTSINLCAGDGVRWVRENYLIKVA-DTDLLTNDPRKAIMLSLDNNDVDPTARFSTAEHGSANGAA---------GHEQILPL----------------GPPLLSQE---LDGGHGAMGCPMYLNDPGK----GRSCLEVRVRRFLAPAKNITKSKNLWIQPGSTKSEEDNFAALDRLGVCGNMKTSWSTDPDTSEEVPTVSRMVLVEGDQETYSFMVKAKQTKPEVCKWLIPHPGGWHILLHASKALL 514
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig139.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JBV2_9PHAE3.240e-4127.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K2D4_9PHAE4.860e-3227.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig139contigP-littoralis_Contig139:38998..41226 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FIA9
Model size1764
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue9.8e-08
EggNOG OGs2D5KK@1|root,2SYVY@2759|Eukaryota
Cds size1746
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789640.6187603-UTR-P-littoralis_Contig139:38997..390131680789640.6187603-UTR-P-littoralis_Contig139:38997..39013Pylaiella littoralis U1_48UTRP-littoralis_Contig139 38998..39013 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789640.630569-CDS-P-littoralis_Contig139:39013..400181680789640.630569-CDS-P-littoralis_Contig139:39013..40018Pylaiella littoralis U1_48CDSP-littoralis_Contig139 39014..40018 +
1680789640.640102-CDS-P-littoralis_Contig139:40485..412261680789640.640102-CDS-P-littoralis_Contig139:40485..41226Pylaiella littoralis U1_48CDSP-littoralis_Contig139 40486..41226 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig139.11.1prot_P-littoralis_Contig139.11.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig139 39014..41226 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig139.11.1

>prot_P-littoralis_Contig139.11.1 ID=prot_P-littoralis_Contig139.11.1|Name=mRNA_P-littoralis_Contig139.11.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=582bp
MHTFFASGKGATHRRDYLRVNGGELSMESDICNACWLFFRNNGGSVKTTA
AAYASYVESSSPGGGESANAERCVALELLEHLRSGKMVSLHECMSWVHAE
RERVGLRAAGERHLTRIAHDIFKDLADNVEGTTAARFSGSELVDLFNADG
RRSYVYLAPTVLDLAYVVQIDLNLKHLEELEKDRRQSAERHVDGAGDASG
GVTSAQTKDLEVVKRAGIIVHDAIVKSPLNLGTRSSIATQLDTNIPDALE
YIREDFPPEFSTLLAYCSGKEYLVSEAATNQQEPSGSEETGVAGNTEGQS
TDAVMVYFWGTAIIKAVLGSRYIPPHYLKLSQVFKVSGVGAWASSLLSRI
GLMCSDSQRWTAEDRRAKTTRDKDLITCDARVPVSVAWDNCDTDATAKYE
SAVHNGQIAATVNVLRVKAGGSVSLSPAESWRPATQVTFEEIQEGLPLDD
HEKTITDFGNLLLEAVARSRSQGRMEGGEQTCVEAELRKLMTAIDVEVDS
QLTFVMAGLTKRDGDCEDALNRVARVVHAGTYGERVLVVVEGDEETHSFM
VNLKRSQPTKYEWLLPVPGAWHLLLHASKALI
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mRNA from alignment at P-littoralis_Contig139:38998..41226+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig139.11.1 ID=mRNA_P-littoralis_Contig139.11.1|Name=mRNA_P-littoralis_Contig139.11.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2229bp|location=Sequence derived from alignment at P-littoralis_Contig139:38998..41226+ (Pylaiella littoralis U1_48)
AATCAGATACGGCTACATGCATACTTTCTTCGCTAGCGGCAAAGGCGCCA
CTCACAGGCGAGATTACCTGCGGGTGAACGGGGGAGAGCTTTCCATGGAG
AGCGACATCTGCAACGCATGCTGGCTGTTCTTCAGGAACAACGGCGGATC
GGTGAAGACCACTGCTGCTGCGTACGCGAGCTACGTGGAAAGTTCCAGCC
CAGGAGGAGGTGAATCAGCCAATGCAGAGCGGTGTGTGGCGCTCGAACTA
CTGGAACACCTCCGGTCCGGCAAGATGGTCTCATTGCACGAATGCATGTC
TTGGGTGCACGCAGAGCGCGAGCGGGTGGGCTTGCGTGCAGCAGGAGAAC
GGCATCTTACCCGCATAGCACATGATATCTTCAAAGATCTGGCCGACAAC
GTGGAAGGCACGACCGCCGCCCGGTTCTCCGGTAGCGAACTCGTTGATCT
ATTCAACGCAGACGGGAGGAGGAGCTATGTGTATCTCGCGCCAACGGTTC
TCGACTTAGCCTACGTTGTCCAGATTGATCTCAACCTGAAACACCTGGAG
GAGCTAGAGAAGGATCGTAGGCAGTCAGCGGAGCGGCATGTTGATGGTGC
AGGCGATGCCTCGGGTGGGGTGACTAGTGCGCAAACGAAGGATCTGGAAG
TAGTAAAGCGTGCCGGAATAATCGTGCATGACGCCATCGTCAAATCTCCG
TTGAACTTAGGCACGAGATCCTCCATTGCCACGCAATTGGACACCAACAT
CCCCGACGCCCTGGAGTACATACGCGAAGACTTTCCCCCGGAATTTTCCA
CGCTCTTGGCATATTGCAGCGGCAAGGAGTATCTTGTGTCGGAAGCAGCT
ACGAACCAACAGGAGCCGTCGGGATCGGAGGAAACCGGTGTCGCAGGCAA
CACGGAGGGGCAAAGCACCGACGCGGTCATGGTCTACTTTTGGGGGACTG
CCATTATCAAGGCTGTTTTGGGATCGCGGTATATCCCCCCCCACTACCTC
AAACTCTCTCAGGTTTTCAAGGTGAGGTTCAAAACAGTCGGGGTTTTAAT
TTGTTTTTTCGAGGGGGGGAGAGGTGGTCAGGGTTTCGGCAACGTTTTTT
TTTTAAATATTGCTTTGGTATAGCCCTTTGCTTTGAAACAATCACCACTC
TCTTTGTCTGGGCTCACATTTTGCAGGTACACACGATCAACCGTCAGCGG
CGCGTCCATGTTACACCCGTGTACCTTATGATCATGGTTAACATCGTCTC
CCTGTTTTCCCTTATCATTGTTTTGTGGACCAACATAAGAAATTTTTTTT
TCTGATGTGATAGTTTTTTGGAGAAAATCAAAGCAATGTTTTTTTGTGTT
TTGACGACCACAAGGCAGCGTAGTTCAGAATGCCGTCGTCCGGTCGGATA
CCAGCACGACCCCTCCCCCCCCAACACCCACACCCACTCACTCACTGTAC
TATACTACACCCTCGCACACGTGGCGCTGCAAACGTAGGTGAGCGGAGTG
GGTGCCTGGGCGAGTTCTCTCCTTTCCAGAATTGGCCTTATGTGCTCCGA
CAGCCAGAGGTGGACCGCTGAAGATCGACGGGCAAAAACAACTCGAGACA
AAGACCTCATTACCTGCGACGCGCGAGTTCCGGTTTCTGTAGCATGGGAC
AACTGCGATACCGATGCCACGGCGAAATACGAGAGCGCAGTCCACAATGG
CCAGATCGCCGCCACCGTCAATGTCCTGCGAGTGAAGGCGGGTGGGTCAG
TCTCCTTATCGCCAGCTGAGTCTTGGAGGCCCGCAACGCAAGTCACCTTC
GAGGAGATTCAGGAAGGCCTGCCGCTTGACGACCACGAGAAGACGATCAC
TGATTTTGGGAATCTTCTGTTAGAGGCCGTCGCCCGTAGCCGTTCACAGG
GGCGCATGGAGGGCGGGGAACAAACATGCGTGGAGGCTGAGCTTCGGAAA
CTAATGACGGCGATCGATGTGGAGGTGGATTCACAGCTGACGTTTGTTAT
GGCGGGGCTGACGAAGCGGGACGGCGATTGCGAGGATGCCCTCAACCGCG
TTGCTCGCGTTGTGCACGCTGGGACATACGGTGAGAGGGTACTTGTTGTG
GTGGAAGGGGATGAAGAGACTCACTCCTTCATGGTGAACCTCAAGAGAAG
TCAGCCGACGAAATACGAGTGGCTGCTCCCTGTGCCGGGAGCGTGGCACT
TGCTTCTGCACGCGTCGAAGGCTCTCATA
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Coding sequence (CDS) from alignment at P-littoralis_Contig139:38998..41226+

>mRNA_P-littoralis_Contig139.11.1 ID=mRNA_P-littoralis_Contig139.11.1|Name=mRNA_P-littoralis_Contig139.11.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1746bp|location=Sequence derived from alignment at P-littoralis_Contig139:38998..41226+ (Pylaiella littoralis U1_48)
ATGCATACTTTCTTCGCTAGCGGCAAAGGCGCCACTCACAGGCGAGATTA
CCTGCGGGTGAACGGGGGAGAGCTTTCCATGGAGAGCGACATCTGCAACG
CATGCTGGCTGTTCTTCAGGAACAACGGCGGATCGGTGAAGACCACTGCT
GCTGCGTACGCGAGCTACGTGGAAAGTTCCAGCCCAGGAGGAGGTGAATC
AGCCAATGCAGAGCGGTGTGTGGCGCTCGAACTACTGGAACACCTCCGGT
CCGGCAAGATGGTCTCATTGCACGAATGCATGTCTTGGGTGCACGCAGAG
CGCGAGCGGGTGGGCTTGCGTGCAGCAGGAGAACGGCATCTTACCCGCAT
AGCACATGATATCTTCAAAGATCTGGCCGACAACGTGGAAGGCACGACCG
CCGCCCGGTTCTCCGGTAGCGAACTCGTTGATCTATTCAACGCAGACGGG
AGGAGGAGCTATGTGTATCTCGCGCCAACGGTTCTCGACTTAGCCTACGT
TGTCCAGATTGATCTCAACCTGAAACACCTGGAGGAGCTAGAGAAGGATC
GTAGGCAGTCAGCGGAGCGGCATGTTGATGGTGCAGGCGATGCCTCGGGT
GGGGTGACTAGTGCGCAAACGAAGGATCTGGAAGTAGTAAAGCGTGCCGG
AATAATCGTGCATGACGCCATCGTCAAATCTCCGTTGAACTTAGGCACGA
GATCCTCCATTGCCACGCAATTGGACACCAACATCCCCGACGCCCTGGAG
TACATACGCGAAGACTTTCCCCCGGAATTTTCCACGCTCTTGGCATATTG
CAGCGGCAAGGAGTATCTTGTGTCGGAAGCAGCTACGAACCAACAGGAGC
CGTCGGGATCGGAGGAAACCGGTGTCGCAGGCAACACGGAGGGGCAAAGC
ACCGACGCGGTCATGGTCTACTTTTGGGGGACTGCCATTATCAAGGCTGT
TTTGGGATCGCGGTATATCCCCCCCCACTACCTCAAACTCTCTCAGGTTT
TCAAGGTGAGCGGAGTGGGTGCCTGGGCGAGTTCTCTCCTTTCCAGAATT
GGCCTTATGTGCTCCGACAGCCAGAGGTGGACCGCTGAAGATCGACGGGC
AAAAACAACTCGAGACAAAGACCTCATTACCTGCGACGCGCGAGTTCCGG
TTTCTGTAGCATGGGACAACTGCGATACCGATGCCACGGCGAAATACGAG
AGCGCAGTCCACAATGGCCAGATCGCCGCCACCGTCAATGTCCTGCGAGT
GAAGGCGGGTGGGTCAGTCTCCTTATCGCCAGCTGAGTCTTGGAGGCCCG
CAACGCAAGTCACCTTCGAGGAGATTCAGGAAGGCCTGCCGCTTGACGAC
CACGAGAAGACGATCACTGATTTTGGGAATCTTCTGTTAGAGGCCGTCGC
CCGTAGCCGTTCACAGGGGCGCATGGAGGGCGGGGAACAAACATGCGTGG
AGGCTGAGCTTCGGAAACTAATGACGGCGATCGATGTGGAGGTGGATTCA
CAGCTGACGTTTGTTATGGCGGGGCTGACGAAGCGGGACGGCGATTGCGA
GGATGCCCTCAACCGCGTTGCTCGCGTTGTGCACGCTGGGACATACGGTG
AGAGGGTACTTGTTGTGGTGGAAGGGGATGAAGAGACTCACTCCTTCATG
GTGAACCTCAAGAGAAGTCAGCCGACGAAATACGAGTGGCTGCTCCCTGT
GCCGGGAGCGTGGCACTTGCTTCTGCACGCGTCGAAGGCTCTCATA
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