mRNA_P-littoralis_Contig139.40.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig139.40.1
Unique NamemRNA_P-littoralis_Contig139.40.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig139.40.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig139contigP-littoralis_Contig139:173232..173864 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size299
Hectar predicted targeting categoryother localisation
Exons2
Cds size297
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789640.3408353-CDS-P-littoralis_Contig139:173231..1734481680789640.3408353-CDS-P-littoralis_Contig139:173231..173448Pylaiella littoralis U1_48CDSP-littoralis_Contig139 173232..173448 -
1680789640.3559754-CDS-P-littoralis_Contig139:173784..1738641680789640.3559754-CDS-P-littoralis_Contig139:173784..173864Pylaiella littoralis U1_48CDSP-littoralis_Contig139 173785..173864 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig139.40.1prot_P-littoralis_Contig139.40.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig139 173232..173864 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig139.40.1

>prot_P-littoralis_Contig139.40.1 ID=prot_P-littoralis_Contig139.40.1|Name=mRNA_P-littoralis_Contig139.40.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=99bp
CWRQGSRQRGRRLYCTTYAASSITWRRSCTTSSWKSRKMPSPSSSSTRVK
NIWLQILLDYLDEYVGGFRCDSGEGAGPNVTDIGLAGGRGGGVVVRTW*
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mRNA from alignment at P-littoralis_Contig139:173232..173864-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig139.40.1 ID=mRNA_P-littoralis_Contig139.40.1|Name=mRNA_P-littoralis_Contig139.40.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=633bp|location=Sequence derived from alignment at P-littoralis_Contig139:173232..173864- (Pylaiella littoralis U1_48)
TGTTGGAGGCAGGGTTCAAGACAGCGCGGGAGGAGATTGTATTGCACTAC
CTATGCTGCATCATCAATCACGTGGAGGAGGTGGGTTGATGCGGTGTTCA
ATAGGAAGTGAGGAAGACATACCAGACGAAATTTGCCCAAGGATTACAAT
CTCCATTCCGCAGCCGTAGTTGATTAAGACATAAACTCCATCCTCCCTCG
GTACGTTACAGCGCTGTGTATTTTGTATCGTCGGGGTACGCTATCTTTCT
GATTCCTTGTGTGTTGGAGCAATCATCGCTCCGAGCGCTTAGTTTTGGAG
ACAACCATTCTGATTTTCTCTTCTATAGCTTGGACTCGACGGCCACGTAG
CTGAGGCACCCTCCCCGTGCCCGCGCTCCTCTCCTCGAACCGCTCCCCGT
CCCCCCGTTGCTGCAGGAGTTGTACAACTTCTTCGTGGAAGAGCAGAAAA
ATGCCATCGCCATCAAGCTCGAGTACCCGAGTCAAAAATATCTGGTTGCA
AATCCTACTCGATTACCTCGACGAGTATGTGGGCGGGTTCAGATGTGACT
CGGGCGAAGGGGCAGGCCCCAACGTGACCGACATCGGGCTAGCAGGGGGT
CGTGGCGGGGGCGTGGTGGTGAGAACCTGGTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig139:173232..173864-

>mRNA_P-littoralis_Contig139.40.1 ID=mRNA_P-littoralis_Contig139.40.1|Name=mRNA_P-littoralis_Contig139.40.1|organism=Pylaiella littoralis U1_48|type=CDS|length=297bp|location=Sequence derived from alignment at P-littoralis_Contig139:173232..173864- (Pylaiella littoralis U1_48)
TGTTGGAGGCAGGGTTCAAGACAGCGCGGGAGGAGATTGTATTGCACTAC
CTATGCTGCATCATCAATCACGTGGAGGAGGAGTTGTACAACTTCTTCGT
GGAAGAGCAGAAAAATGCCATCGCCATCAAGCTCGAGTACCCGAGTCAAA
AATATCTGGTTGCAAATCCTACTCGATTACCTCGACGAGTATGTGGGCGG
GTTCAGATGTGACTCGGGCGAAGGGGCAGGCCCCAACGTGACCGACATCG
GGCTAGCAGGGGGTCGTGGCGGGGGCGTGGTGGTGAGAACCTGGTGA
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