mRNA_P-littoralis_Contig1388.4.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1388.4.1
Unique NamemRNA_P-littoralis_Contig1388.4.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1388.4.1 vs. uniprot
Match: A0A6H5KW14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW14_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 2.650e-13
Identity = 35/67 (52.24%), Postives = 46/67 (68.66%), Query Frame = 1 
Query:   70 DLTLHRLAGIIGQVDEELYRLFVQEKRKANSVTLEYPKQQIAMSPARMRILYFIAGWLLSRIWKHVR 270
            D   H L  II  VDEELYR+FV+E+ K+N+V L YP +   +S AR ++LY+IAGWLLS+ W   R
Sbjct:   93 DQGRHYLCCIINVVDEELYRVFVKEREKSNTVALTYPTEIHKISTARGKVLYYIAGWLLSKAWSRKR 159
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BLAST of mRNA_P-littoralis_Contig1388.4.1 vs. uniprot
Match: A0A6H5K7M3_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7M3_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 2.480e-11
Identity = 41/98 (41.84%), Postives = 56/98 (57.14%), Query Frame = 1 
Query:    7 GTLQWWLGHYEVQ------EAVEREPKDLTLHRLAGIIGQVDEELYR----LFVQEKRKANSVTLEYPKQQIAMSPARMRILYFIAGWLLSRIWKHVR 270
            GTL+ W+    +Q      ++VER       H L G+I QVDE   R    L   + R AN +T  YP+ Q+A+S  R R+LY+IAGW+LS+I  HVR
Sbjct:   84 GTLRGWMSDDVIQRVMFGLQSVERGK-----HELCGVINQVDEVNLRRLGGLAENKLRDANVITPTYPRTQVALSIPRRRLLYYIAGWVLSKIVTHVR 176
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BLAST of mRNA_P-littoralis_Contig1388.4.1 vs. uniprot
Match: D7FVM7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVM7_ECTSI)

HSP 1 Score: 65.5 bits (158), Expect = 1.720e-10
Identity = 28/78 (35.90%), Postives = 50/78 (64.10%), Query Frame = 1 
Query:   37 EVQEAVEREPKDLTLHRLAGIIGQVDEELYRLFVQEKRKANSVTLEYPKQQIAMSPARMRILYFIAGWLLSRIWKHVR 270
            +V E V+   + L       ++    +ELY +FV++K++AN + L YP ++  ++  R ++LY+I+GWLLS++W HVR
Sbjct:  143 DVGEKVDAAAEGLFREHFPWLLDLGVQELYGVFVRKKKEANLIKLSYPDKKTRVTKPRAKVLYYISGWLLSKVWTHVR 220
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1388.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KW14_9PHAE2.650e-1352.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7M3_9PHAE2.480e-1141.84Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D7FVM7_ECTSI1.720e-1035.90Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1388contigP-littoralis_Contig1388:12515..13197 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size271
Hectar predicted targeting categoryother localisation
Exons2
Cds size270
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789640.1971028-CDS-P-littoralis_Contig1388:12514..126671680789640.1971028-CDS-P-littoralis_Contig1388:12514..12667Pylaiella littoralis U1_48CDSP-littoralis_Contig1388 12515..12667 -
1680789640.2097218-CDS-P-littoralis_Contig1388:13080..131971680789640.2097218-CDS-P-littoralis_Contig1388:13080..13197Pylaiella littoralis U1_48CDSP-littoralis_Contig1388 13081..13197 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1388.4.1prot_P-littoralis_Contig1388.4.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1388 12515..13197 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1388.4.1

>prot_P-littoralis_Contig1388.4.1 ID=prot_P-littoralis_Contig1388.4.1|Name=mRNA_P-littoralis_Contig1388.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=90bp
MGGTLQWWLGHYEVQEAVEREPKDLTLHRLAGIIGQVDEELYRLFVQEKR
KANSVTLEYPKQQIAMSPARMRILYFIAGWLLSRIWKHVR
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mRNA from alignment at P-littoralis_Contig1388:12515..13197-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1388.4.1 ID=mRNA_P-littoralis_Contig1388.4.1|Name=mRNA_P-littoralis_Contig1388.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=683bp|location=Sequence derived from alignment at P-littoralis_Contig1388:12515..13197- (Pylaiella littoralis U1_48)
ATGGGGGGCACTTTGCAATGGTGGCTAGGTCACTATGAGGTCCAGGAGGC
GGTGGAGCGCGAGCCCAAGGACCTCACCCTCCACCGGCTGGCGGGCATCA
TCGGCCAGGTGGACGAGGTATGGGCATATGTTCTGCTGTTGTTGCATTGT
GTTTCGTTGGTCGTGTAAAATTTGCGCCTGCATGTGTGGGCGCAAATGTG
TATGTTTACTTTGCGGATGGGGGGGCTCACCAGAGTGTCTCACCTCTCAA
TTTTCTCACGGGTCATACGGCATACTCCAAGAGTTCTTGCATGCCTTGCG
GCGCTTCGAAAGACGCGCGAAGTCTGGTAGGTTCTTCATGTGTAGCTCGA
CTGAAAAGTAATCATTTGGCCTACGCCCGTTTGTTCCAGCAGTGAGGGCT
GGAATGATGCCCGCCGTTAAATTTGTGGCGTTAATCTAGGCCTGATCTTT
TACAAACCCTCGTGCCGTCGTGCGTCCTCGCCCGTTGTTCGCTCCCGACT
TGTTCCATCTGTCCGTTTTCTGTTCCGAAGGAGCTGTACAGGCTGTTTGT
CCAAGAGAAGAGGAAGGCGAACTCGGTCACCCTCGAGTACCCGAAGCAAC
AGATAGCCATGTCGCCAGCGCGCATGCGGATCTTGTACTTCATCGCCGGG
TGGTTGTTGAGCAGGATTTGGAAACACGTCCGT
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Coding sequence (CDS) from alignment at P-littoralis_Contig1388:12515..13197-

>mRNA_P-littoralis_Contig1388.4.1 ID=mRNA_P-littoralis_Contig1388.4.1|Name=mRNA_P-littoralis_Contig1388.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=270bp|location=Sequence derived from alignment at P-littoralis_Contig1388:12515..13197- (Pylaiella littoralis U1_48)
ATGGGGGGCACTTTGCAATGGTGGCTAGGTCACTATGAGGTCCAGGAGGC
GGTGGAGCGCGAGCCCAAGGACCTCACCCTCCACCGGCTGGCGGGCATCA
TCGGCCAGGTGGACGAGGAGCTGTACAGGCTGTTTGTCCAAGAGAAGAGG
AAGGCGAACTCGGTCACCCTCGAGTACCCGAAGCAACAGATAGCCATGTC
GCCAGCGCGCATGCGGATCTTGTACTTCATCGCCGGGTGGTTGTTGAGCA
GGATTTGGAAACACGTCCGT
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