mRNA_P-littoralis_Contig1388.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1388.1.1
Unique NamemRNA_P-littoralis_Contig1388.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1388.1.1 vs. uniprot
Match: A0A6H5K5I6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5I6_9PHAE)

HSP 1 Score: 151 bits (381), Expect = 3.350e-43
Identity = 73/111 (65.77%), Postives = 84/111 (75.68%), Query Frame = 1 
Query:    1 GGEHAWKKHSITRESWFDLRLCILGFVSTCRFLFDRPAIFQVDSLSPNDRRFIGPRNLSQDLIEHRFSHYRGNNGTHRNPTAQEVKTRSQTGDVIRALNGKTRRNSNINAN 333
            G +  WKKH IT +SWFDLRL ILGFVS CR+LF+ P  FQ+DSLSPN RRF+ PRN SQD+ EHRFSH R   GTHRNPTA+E K RS  GD+ RA NGK RRN++ N N
Sbjct:  120 GDKLGWKKHFITHQSWFDLRLSILGFVSMCRYLFEDPERFQIDSLSPNCRRFLSPRNCSQDICEHRFSHIRAALGTHRNPTAREAKKRSAVGDLCRATNGKRRRNASRNPN 230
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BLAST of mRNA_P-littoralis_Contig1388.1.1 vs. uniprot
Match: A0A6H5JR14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR14_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 2.670e-26
Identity = 56/109 (51.38%), Postives = 69/109 (63.30%), Query Frame = 1 
Query:    4 GEHAWKKHSITRESWFDLRLCILGFVSTCRFLFDRPAIFQVDSLSPNDRRFIGPRNLSQDLIEHRFSHYRGNNGTHRNPTAQEVKTRSQTGDVIRALNGKTRRNSNINA 330
            G+  WKKH IT  SW D+R+CILGFVS CR+LF+  + F+V    P    FI  RN  QD+IEH F H R   G+HRNPTA + K R   GD++R L+G  R N N NA
Sbjct:  602 GDETWKKHFITEFSWTDIRVCILGFVSMCRYLFEEDSRFKVSPRRPWPH-FINQRNCGQDVIEHCFGHMRQGLGSHRNPTAAQAKERGARGDILRGLHGPCRANYNRNA 709
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BLAST of mRNA_P-littoralis_Contig1388.1.1 vs. uniprot
Match: A0A6H5JTX6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTX6_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 5.670e-19
Identity = 45/100 (45.00%), Postives = 65/100 (65.00%), Query Frame = 1 
Query:   16 WKKHSITRESWFDLRLCILGFVSTCRFLFDRPAIFQVDSLSPNDRRFIGPRNLSQDLIEHRFSHYRGNNGTHRNPTAQEVKTRSQTGDVIRALNGKTRRN 315
            WK H IT  SW D+R+CILG VS CR+LF++ + F++  LS +   FI  R + QD++EHR+ H     G+H NPTA + K R+   D+ R+L+G +R N
Sbjct:   91 WKAHFITDHSWTDIRVCILGTVSMCRYLFEKDSRFKIYPLS-DVPHFINLRCIGQDIVEHRYGHMCQCLGSHCNPTAAQAKERAAQEDLQRSLHGISRAN 189
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BLAST of mRNA_P-littoralis_Contig1388.1.1 vs. uniprot
Match: A0A6H5JRH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRH8_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 1.570e-7
Identity = 27/59 (45.76%), Postives = 38/59 (64.41%), Query Frame = 1 
Query:    4 GEHAWKKHSITRESWFDLRLCILGFVSTCRFLFDRPAIFQVDSLSPNDRRFIGPRNLSQ 180
            G+ AWK H IT  SW D+R+CILG VS CR++F+  + F++  LS +   FI  R + Q
Sbjct:  479 GDGAWKAHFITDHSWTDIRVCILGTVSMCRYVFEEDSTFKIPPLS-DVPHFINLRYIGQ 536
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1388.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5K5I6_9PHAE3.350e-4365.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JR14_9PHAE2.670e-2651.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTX6_9PHAE5.670e-1945.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRH8_9PHAE1.570e-745.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1388contigP-littoralis_Contig1388:9379..9926 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size335
Hectar predicted targeting categoryother localisation
Exons2
Cds size333
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789640.1574779-CDS-P-littoralis_Contig1388:9378..95581680789640.1574779-CDS-P-littoralis_Contig1388:9378..9558Pylaiella littoralis U1_48CDSP-littoralis_Contig1388 9379..9558 +
1680789640.1666276-CDS-P-littoralis_Contig1388:9772..99251680789640.1666276-CDS-P-littoralis_Contig1388:9772..9925Pylaiella littoralis U1_48CDSP-littoralis_Contig1388 9773..9925 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1388.1.1prot_P-littoralis_Contig1388.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1388 9379..9925 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1388.1.1

>prot_P-littoralis_Contig1388.1.1 ID=prot_P-littoralis_Contig1388.1.1|Name=mRNA_P-littoralis_Contig1388.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=111bp
GGEHAWKKHSITRESWFDLRLCILGFVSTCRFLFDRPAIFQVDSLSPNDR
RFIGPRNLSQDLIEHRFSHYRGNNGTHRNPTAQEVKTRSQTGDVIRALNG
KTRRNSNINAN
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mRNA from alignment at P-littoralis_Contig1388:9379..9926+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1388.1.1 ID=mRNA_P-littoralis_Contig1388.1.1|Name=mRNA_P-littoralis_Contig1388.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=548bp|location=Sequence derived from alignment at P-littoralis_Contig1388:9379..9926+ (Pylaiella littoralis U1_48)
GGCGGAGAGCACGCGTGGAAGAAGCACTCTATCACGCGCGAGTCGTGGTT
CGATCTTCGCCTGTGCATCCTCGGTTTCGTGAGCACGTGTCGTTTCCTTT
TCGACCGTCCTGCGATTTTCCAGGTGGACAGCCTTTCGCCGAACGACCGA
CGCTTCATCGGACCACGAAACTTGAGCCAGGTTAGTGCCACTTTTGACAT
GTCGCGCGCTCGATGCCTCCGCGGAAAATCGGCATAGAGGAAGTCCCTGT
TCGTGTCTGAATTAGGGAAGATACTTTTGATGCTACTGGCGTGGGATATG
GCCACATTTTTATGCGGCATGACTCCGACCTCTCAGCCACCCAATGGATT
GACAGCCTTTTGCGCTGTCCGCCGTCGACGTCTTGCTGCAACAGGACTTG
ATCGAGCACAGGTTTTCGCACTACCGCGGGAACAACGGGACGCACAGGAA
TCCGACGGCGCAGGAAGTCAAGACTCGGTCACAGACCGGGGACGTCATCA
GGGCTTTAAACGGGAAGACTCGTAGAAACTCCAACATAAACGCCAATG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1388:9379..9926+

>mRNA_P-littoralis_Contig1388.1.1 ID=mRNA_P-littoralis_Contig1388.1.1|Name=mRNA_P-littoralis_Contig1388.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=333bp|location=Sequence derived from alignment at P-littoralis_Contig1388:9379..9926+ (Pylaiella littoralis U1_48)
GGCGGAGAGCACGCGTGGAAGAAGCACTCTATCACGCGCGAGTCGTGGTT
CGATCTTCGCCTGTGCATCCTCGGTTTCGTGAGCACGTGTCGTTTCCTTT
TCGACCGTCCTGCGATTTTCCAGGTGGACAGCCTTTCGCCGAACGACCGA
CGCTTCATCGGACCACGAAACTTGAGCCAGGACTTGATCGAGCACAGGTT
TTCGCACTACCGCGGGAACAACGGGACGCACAGGAATCCGACGGCGCAGG
AAGTCAAGACTCGGTCACAGACCGGGGACGTCATCAGGGCTTTAAACGGG
AAGACTCGTAGAAACTCCAACATAAACGCCAAT
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