mRNA_P-littoralis_Contig1388.5.4 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1388.5.4
Unique NamemRNA_P-littoralis_Contig1388.5.4
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1388.5.4 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1388contigP-littoralis_Contig1388:13206..18835 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size695
Hectar predicted targeting categoryother localisation
Exons5
Cds size486
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1388.5.4prot_P-littoralis_Contig1388.5.4Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1388 13331..18751 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789640.0558007-UTR-P-littoralis_Contig1388:13205..133301680789640.0558007-UTR-P-littoralis_Contig1388:13205..13330Pylaiella littoralis U1_48UTRP-littoralis_Contig1388 13206..13330 -
1680789640.1189857-UTR-P-littoralis_Contig1388:18751..188351680789640.1189857-UTR-P-littoralis_Contig1388:18751..18835Pylaiella littoralis U1_48UTRP-littoralis_Contig1388 18752..18835 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789640.0676725-CDS-P-littoralis_Contig1388:13330..134771680789640.0676725-CDS-P-littoralis_Contig1388:13330..13477Pylaiella littoralis U1_48CDSP-littoralis_Contig1388 13331..13477 -
1680789640.0773654-CDS-P-littoralis_Contig1388:13791..139191680789640.0773654-CDS-P-littoralis_Contig1388:13791..13919Pylaiella littoralis U1_48CDSP-littoralis_Contig1388 13792..13919 -
1680789640.0871148-CDS-P-littoralis_Contig1388:14142..142091680789640.0871148-CDS-P-littoralis_Contig1388:14142..14209Pylaiella littoralis U1_48CDSP-littoralis_Contig1388 14143..14209 -
1680789640.0966718-CDS-P-littoralis_Contig1388:14381..144851680789640.0966718-CDS-P-littoralis_Contig1388:14381..14485Pylaiella littoralis U1_48CDSP-littoralis_Contig1388 14382..14485 -
1680789640.1074262-CDS-P-littoralis_Contig1388:18711..187511680789640.1074262-CDS-P-littoralis_Contig1388:18711..18751Pylaiella littoralis U1_48CDSP-littoralis_Contig1388 18712..18751 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1388.5.4

>prot_P-littoralis_Contig1388.5.4 ID=prot_P-littoralis_Contig1388.5.4|Name=mRNA_P-littoralis_Contig1388.5.4|organism=Pylaiella littoralis U1_48|type=polypeptide|length=162bp
MELESRVQRRKLRGCADMETEDVRDAAEAGAVAVEDMLPVPARRMFAEGD
EEYGDDEDDVVAINNSDRKREINAGEPHEEDEECEEDGDWEHVERFEVLA
ALPRDDDNGQGQLGTASSRTQALLDAHADKLLADPEAIVQRLVDAVDRLF
IEHYRELILGI*
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mRNA from alignment at P-littoralis_Contig1388:13206..18835-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1388.5.4 ID=mRNA_P-littoralis_Contig1388.5.4|Name=mRNA_P-littoralis_Contig1388.5.4|organism=Pylaiella littoralis U1_48|type=mRNA|length=5630bp|location=Sequence derived from alignment at P-littoralis_Contig1388:13206..18835- (Pylaiella littoralis U1_48)
CACACACACACGTCGGCCCTCACACCTCGGCACGCGGTCCACGCGCGGAG
GCGAAACCTCTTGGGTCACCTGAGCATTGCACCAATGGAGCTCGAGTCCA
GGGTTCAGCGACGGAAGCTTCGCGGTGAGTGCAAAAATCGTATTTTCTAG
GGTCTCACAAGCGGCCCCTTCTGACCCCGGCTTCCGACTACCCTCTCTAG
CACGACAGCGTGCTCCTTCCACAGCGGTGGCAAGTGCAGGCTCGCCCATC
CAAGCCGTTCGCCATACTCATGATCTACTCTCGGGAGCAATCCGCGTGGG
AAACGATCGTGTGTGGGCGAAGATATCAACACATACATGGGCACATGTCA
TATTCGGTTAGGGTTACGCCGCACCAACAGGCGCACGCGGTACTGTTTTT
TGGTTTTCGCTTGTAATTTTTTCGAAAATATGGGCGACCTGGAGGAAGGC
CCTGATGGGTGAAATGCTACTATTAATGTACTATGGAGTATGACTACAAA
TTCGCTATAAACTCGCTACAAGTATACGACATATAGTCATACTCCATAGG
TGCCACTATGTCCCCTCTTGTGCCATCTTGTGCGTAAGAGGGGGGGTAGT
TGTGAGTGTAGGACCCCGTCGTGCATGCTGGGATTTTTCACTTTAGGGCG
GGCCTTGTATATTTTCTCGTGTATAGCACTGCTGCACTAGTCTAGTCTTG
CTGCGGCAGTTCAGCATCAGAAATTGCCCGTCCGTAGGTAGTCGTGCCCT
CAAAGTTTGCCAATTTTTTTCGTGGGTCCAAATCTCGCAGCAGTACAGGA
CGTAAGACCACTTATTGTAGCTGAAAAAAATCTCCTTAGAATTCGCCTTT
TTCAATAAGAAGAATTCCAACAGGATCTTCGAAAAGCACCACTTCTTATA
ACAGCGATTGATTTTATTTTTTCCGTGGGGGATTCGTTTTTTTTTTACAG
ACAGACGGTGTTGACATCAGTTCAACAGGCTACTGCTGCTGCTGCTGCTG
TATGTATTTGTTGATTACTTTCGAATGAATGAAGCCACAGCAATATCAAA
GCCATGCCCCGTAGGCTGTGTATATGGTCGTGCATCTCCGATTGTCCTTT
GAGGCCGCGAGGCATCAACAGGCTCACAAAAAAAGAGTGCAGGCGTCGAT
GACGTGTGAAAAAAAATAGGAAAAGAGAAGGAAGTCCGCAGCAGCAGCAG
GGCAGCAAGGTATTTTGCGCAGGTACACCAGTTTGGTTTCTTTTCCATAA
CTATCGAACCAATTGAGCCAAAGCAATACCGAAGCCATGGACCGTGAGCT
GTGTGTCTTGCCCCTCTCCTCCGTTGGTAATCTTGGGCCGCAAGGCATCA
ATAGGCTAGTAATCTAGCTCTTGCAGAAACCGATCACTCGTGAAAAAAGA
GAAGACATCTCCGCCGTCTGTCTGTCTGTACTGCTGTACAGGAGTATATA
TGCAGCAGTACCTGGTATGTATTTGCTGGACTCAACGGCCTTTCTTCTCA
ATTTTTCCACAACTCGTCGGTTTCTGCAACGCTTCTATTGCTAGTCAGTT
GATACCTTGCGGCCTTAGATGACAACCGGAGGACAAGGACCAGAGGCATA
GCTCACGGGCGATGGCTTTGGCATTGCTGTGGTTCAATTGGTTCGAGAGT
GATGGATGAAAAACCAAACTCATGTAGCGGCCCAAAATACAAAATACCTG
CTGCTGCTGCTTCCTGCGGCTCCCTCCTCCTGCCCGCTCTACTCCCTCAC
CCCACACTACTTTTGAGTTCCGTCCATTGCTCTCGAACGATTGAACCCAC
GGCAACAACAAAGCAATCGCCCTTGAGCTGTGTGTCTGGTCCCTCTCCTC
TGTAGGTCATCTGGAGCCGCAAGGTATCGATAGGCTTGCAAAAATAATAC
CGCTGTATGTAGTTGTTCAAGTCACCCGACCCATCGTGGGAGGCTGTGTG
AGGAGGGTCCAAACTTTTCCAATAAGCGTTTTCTGATCGATCGAATCGCT
TAGAAAAAGTGATTTTTCTGAGCGATTGGGTCGATCGGAAAAAGTTATTA
GAAAAGTTGAGATCGAAAAAGGGGGTTTTTCCATCTATAACAAGTGGTCA
AACCGCCCAAGATCAAAGAAGGCTTTTTCTAAGGAGGGTTTTTGCAGCTA
TAATAAGTGGTCTAAGGCGGTTTCTTGTAGGGCCGGATTTTTTTTTCATT
TTTTGATAGAATCCGAACGAACTTTTTCCGGCCAACGGCTGCCGATCCGC
TGTTCTTATAGGTAATGGGTGTTCGGATTTTCGGTGATCCTTAGTTGGTT
GAAGAGTCGGCTCCAGAGTATATATCTGCATCGAAGGACCGCATGGTGGT
GTTTTTTGCGCTGAAACCCCTTTGCATCGCCGCTCGTAACTTTCGAACGA
ATGAAGACACAGCAATGACGAAGGCATCTTCCGTGAGCTGTGTATATGAT
CCCCGTGTCGTGATCGCTTGGGTTAGGATTACGTCCGTACATTCGCAACG
TAGGTTTGCTCATGGCCAACTCATGCGAAACAAATTGAGAAAGATGTATC
AGCCGGTCTGCTGTACAGCAGCAGTATTATATACTGCTGTATGTATGGTA
GTTGTACAGCAGTAGAGAAATGAGATGACAGCTCGGGTTCTTTTTTACAA
CACAACATGCCACAGCCACGAGCAATGACCATTTTGCGAACATGCCAGTG
TGATCCTCACCCAAACGATTACCACACGAGGGGAGCCATACGCACAGCTC
ACGGGAGATGGGCTTGTCATCACTGTGGCTTCATTCATTGGGGAGTTACG
AGCGAAGATGCAAACTGGTCTCTCTCAGAGGAAGCTTTGATACTCCTCCT
GCTGCTGCTGCTGCTGTGCTGATGATGCTGCTGCTACATACGGTTGGTTT
TGGTTGCTGGTGAACACGATGGTACGAATGATGACACGGCAAGCGTACGC
AGAAAGATGGTGGACACATGTATGGACGGCAGCAAGCAGTAGTAGCAGCA
GCAGCAGGAGAAGCAGCTGCAACAACACAGAAAGTAGTAGCAGCAGCTCT
CCTCCTCTGATGCTCTGTTATGATTACCTAATATCGTTTGTTTTGTCCAA
ACACAAAGAGAGAGACAACTTCACACATTTTTTTTTTAATATATTTTCCG
ATCGTATTTTCCGAACTGATCCAGCGTTCGGAAAATGTCCGATTTTCCGG
CTGAAATCCGATTAAAAGCTGTTCGGAAAATTTTGTTCGGAAAATGTTGT
TCGGAAAAAGGTGTTTTCCGAACCTATAAGAAGCCTGATCTCAAAAAAAA
TTCGGAATCTGTCAAAAAATGAATAAAATATCCGGCCCTACAAGAAACCG
CCTAAGGCGGTTTCTTGTAGGGCCGGATTTTTTTTTCATTCTTTGATAGA
ATCCGAACGAACTTTTTCCGGCCAACGGTTGCCGATCCGCTGTTCTTATA
GGTAAATATGTGTTCGGATTTTCGGTGTCCCCTTTTTTGAGTATGTGGTT
GAAGAGTCGGCTCCAGAGTGTATCTGCATCGAAGGACCGCAGGATGGTGT
TTTTTGCGCTGAAACCCGTTTGCGTCGCCGCTCGTAACTTTCGAACGAAT
GAAGACACAGAATGACGAAGGCATCTTCCGTGAACTGTGTATATGATCCC
CCTCGTGTCGTGATCGCTTGGGGGTTACATCCGTACATTCGCAACGTAGG
TTTGCTCATGGCCAACTCATGCGAAACAAATTGAGAAAGATGTATCAGCC
GGACTGCTGTACAGCAGCAGTATTATATACTGCTGTATGTATGGTAGTTG
TACAGCAGTAGAGAAAGGAGATGACAGCTCGGGTTCTTTTTTACAACACA
ACAACATGCCACAGCCACGAGCAATGACCATTTTGCGAACATGCCAGTGT
AATCCTCACCCAAACGATTACCACACGAGGGGAGCCATACGCACAGCTCA
CGGGAGATGGGCTTGTCATCGCTGTGGCTTCATATATTGGGGAGTTACGA
GCGAAGATGCAACTTGTGGTCTCTCTCAGAGGAAGCTTTGATACTCCTCC
TGCTGCTGCTGCTGCTGTGCTGATGATGCTGCTGCTACGTACGGTTGGTT
TTGGTTGCTGATGAACACGATGGAATGAACGATGACACGGCAAGCGCACG
CAGAAAGACGGTGGACACATGTTATGTATGGACAGCAGCAAGCAGTAGTA
GCAGCAGCAGCAGGAGCAGCAGCTGCAACAACACAGAAAGTAGTAGCAGA
GCTCTCCTCCTCTGATGCTCTGTTGTGATTAATATCGTTTGTTTTGTCCT
CATCACGAAGGTATACTCATTCATGCCTAAATATGTACGTCGAACGTTAG
GTTGTGCAGACATGGAGACGGAAGATGTGCGAGACGCCGCCGAAGCCGGA
GCGGTTGCGGTTGAAGACATGTTGCCTGTTCCGGCGAGACGGATGTTCGC
CGAGGTAAGACAGCGACCCTTGCATGCAAGACCTAGGTTTCTCTGGCTCA
GAATAAGCATGTTGTGCTTTCATCGGCTGGCAATTGGGGCGCTTCTTCCG
CGACATGTCCGCCTACGCACACGTTAACCCCCCCCCCGTCCTTGGGCCCC
CCATCTCTGTACATTGCCCATACCAGGGGGATGAAGAGTACGGGGACGAC
GAGGATGACGTCGTGGCTATCAACAACTCAGATCGTAAAAGAGGTGCGTG
ATTATGTTGTTGTCTGGTATCCCGCCGATGTGTGAGGGGGGGGACCTCGG
GGCGTTCACGACTCTCGCGTTGGCACGTTCGGATCGGGGGGGGAAGGAGC
GTTACTCTAGGATGAGAGAATAAAGTTGAGGTGCCTGTAGAGAATCGCGA
CTGTTCAAAAGTCCGCAATAAAGAAGCGGTACGCTTAACTGCGAGGGCGC
CTGATTTCGTCTCATGAAATTAATGCAGGCGAACCCCACGAAGAAGACGA
GGAGTGCGAGGAGGACGGAGACTGGGAACACGTGGAGAGGTTCGAGGTCC
TCGCTGCTCTACCTCGTGACGACGACAACGGACAGGGTCAGCTGGTCAGT
TTCGATTCTGCCACATCCAAAACTCATACTCCCGTAGCCCTCGTCTGTGG
CGATTTATGGGATCGGAGTTCAGGCGTGTTCGTTTGGCAAAGGATTGAAA
AAGATTTATCTCGTTAATTCTCTGCCATGTTGTCGGTTCGCCGCACACCG
TCTTCTGTCACATTCGAGCTCATGGTGGTACTCGCGAATAGGGCTCTATA
GTTTCTGTGAGTTCCGGACAACATCTCTCAAATGCCTGCCCTTGGCATGT
CCCACCCCCTAAACCAGCTTTGCCTCGTGCTTTCTTTGGCTGTACCTTTC
AACGGCAGGGGACCGCCAGCTCCCGGACGCAGGCCTTGTTGGATGCCCAC
GCAGACAAGCTGCTGGCGGACCCGGAAGCCATCGTTCAGCGTCTCGTGGA
TGCCGTCGATCGACTTTTCATCGAGCACTACAGAGAGTTGATTCTTGGGA
TATGACGAAGGGTCTGGCGGCCACGCGCAAGGTAATCCTCGACGAGTGGA
CATCATTGGTTGACATCCTCGCAGCAACGAGCAAGGGGAAAGGGGCGACG
AAGGAGGCTTCCAAGTTCACGTTGGAGCGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1388:13206..18835-

>mRNA_P-littoralis_Contig1388.5.4 ID=mRNA_P-littoralis_Contig1388.5.4|Name=mRNA_P-littoralis_Contig1388.5.4|organism=Pylaiella littoralis U1_48|type=CDS|length=486bp|location=Sequence derived from alignment at P-littoralis_Contig1388:13206..18835- (Pylaiella littoralis U1_48)
ATGGAGCTCGAGTCCAGGGTTCAGCGACGGAAGCTTCGCGGTTGTGCAGA
CATGGAGACGGAAGATGTGCGAGACGCCGCCGAAGCCGGAGCGGTTGCGG
TTGAAGACATGTTGCCTGTTCCGGCGAGACGGATGTTCGCCGAGGGGGAT
GAAGAGTACGGGGACGACGAGGATGACGTCGTGGCTATCAACAACTCAGA
TCGTAAAAGAGAAATTAATGCAGGCGAACCCCACGAAGAAGACGAGGAGT
GCGAGGAGGACGGAGACTGGGAACACGTGGAGAGGTTCGAGGTCCTCGCT
GCTCTACCTCGTGACGACGACAACGGACAGGGTCAGCTGGGGACCGCCAG
CTCCCGGACGCAGGCCTTGTTGGATGCCCACGCAGACAAGCTGCTGGCGG
ACCCGGAAGCCATCGTTCAGCGTCTCGTGGATGCCGTCGATCGACTTTTC
ATCGAGCACTACAGAGAGTTGATTCTTGGGATATGA
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