mRNA_P-littoralis_Contig1387.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1387.1.1
Unique NamemRNA_P-littoralis_Contig1387.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1387.1.1 vs. uniprot
Match: A0A6H5JTB8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTB8_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 7.260e-26
Identity = 52/53 (98.11%), Postives = 52/53 (98.11%), Query Frame = 1 
Query:    1 MPYLAFIARLYLGIEATSCQAERNFSALAHLIGHLRCNMLPSKVERMMFIRLN 159
            MPYLAFIARLYLGIEATSCQAERNFSALAHLIG LRCNMLPSKVERMMFIRLN
Sbjct:  555 MPYLAFIARLYLGIEATSCQAERNFSALAHLIGQLRCNMLPSKVERMMFIRLN 607
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BLAST of mRNA_P-littoralis_Contig1387.1.1 vs. uniprot
Match: A0A6H5JGG8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGG8_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 7.500e-26
Identity = 52/53 (98.11%), Postives = 52/53 (98.11%), Query Frame = 1 
Query:    1 MPYLAFIARLYLGIEATSCQAERNFSALAHLIGHLRCNMLPSKVERMMFIRLN 159
            MPYLAFIARLYLGIEATSCQAERNFSALAHLIG LRCNMLPSKVERMMFIRLN
Sbjct:  750 MPYLAFIARLYLGIEATSCQAERNFSALAHLIGQLRCNMLPSKVERMMFIRLN 802
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BLAST of mRNA_P-littoralis_Contig1387.1.1 vs. uniprot
Match: A0A6H5KJT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJT6_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 5.140e-24
Identity = 47/53 (88.68%), Postives = 50/53 (94.34%), Query Frame = 1 
Query:    1 MPYLAFIARLYLGIEATSCQAERNFSALAHLIGHLRCNMLPSKVERMMFIRLN 159
            MPYLAFIARL+LGIEA+SCQAERNFSAL+HLIGHLRCNML  KVERMM IRLN
Sbjct:  173 MPYLAFIARLFLGIEASSCQAERNFSALSHLIGHLRCNMLSRKVERMMLIRLN 225
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BLAST of mRNA_P-littoralis_Contig1387.1.1 vs. uniprot
Match: A0A6H5JXV5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXV5_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 1.790e-23
Identity = 48/53 (90.57%), Postives = 51/53 (96.23%), Query Frame = 1 
Query:    1 MPYLAFIARLYLGIEATSCQAERNFSALAHLIGHLRCNMLPSKVERMMFIRLN 159
            MPYLAFIARL+LGIEATSCQAERNFSALAHLIG+LRCNMLP +VERMM IRLN
Sbjct:  447 MPYLAFIARLHLGIEATSCQAERNFSALAHLIGNLRCNMLPHRVERMMLIRLN 499
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BLAST of mRNA_P-littoralis_Contig1387.1.1 vs. uniprot
Match: A0A6H5JRT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRT6_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 7.060e-23
Identity = 47/53 (88.68%), Postives = 50/53 (94.34%), Query Frame = 1 
Query:    1 MPYLAFIARLYLGIEATSCQAERNFSALAHLIGHLRCNMLPSKVERMMFIRLN 159
            MPYLAFIARL+LGIEA+SCQAERNFSAL+HLIGHLRCNML  KVERMM IRLN
Sbjct:  738 MPYLAFIARLFLGIEASSCQAERNFSALSHLIGHLRCNMLSRKVERMMLIRLN 790
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BLAST of mRNA_P-littoralis_Contig1387.1.1 vs. uniprot
Match: A0A6H5L7P7_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7P7_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 8.390e-23
Identity = 45/53 (84.91%), Postives = 48/53 (90.57%), Query Frame = 1 
Query:    1 MPYLAFIARLYLGIEATSCQAERNFSALAHLIGHLRCNMLPSKVERMMFIRLN 159
            MPYLAFIARL+LGIEATSCQAERNFSALAHLIG  RCNML  +VERMM +RLN
Sbjct:  168 MPYLAFIARLHLGIEATSCQAERNFSALAHLIGDFRCNMLSHRVERMMLVRLN 220
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BLAST of mRNA_P-littoralis_Contig1387.1.1 vs. uniprot
Match: A0A6H5KDJ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDJ6_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 2.180e-22
Identity = 48/53 (90.57%), Postives = 49/53 (92.45%), Query Frame = 1 
Query:    1 MPYLAFIARLYLGIEATSCQAERNFSALAHLIGHLRCNMLPSKVERMMFIRLN 159
            MPYLAFIARL+LGIEATSCQAERNFSALAHLIG LRCNML  KVERMM IRLN
Sbjct:  433 MPYLAFIARLHLGIEATSCQAERNFSALAHLIGTLRCNMLARKVERMMLIRLN 485
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BLAST of mRNA_P-littoralis_Contig1387.1.1 vs. uniprot
Match: A0A6H5KAS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAS2_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 5.570e-22
Identity = 46/53 (86.79%), Postives = 48/53 (90.57%), Query Frame = 1 
Query:    1 MPYLAFIARLYLGIEATSCQAERNFSALAHLIGHLRCNMLPSKVERMMFIRLN 159
            MPYLAFIARLYLGIEATSCQAERNFSA +HLIG LRC +LPSK ER MFIRLN
Sbjct:  344 MPYLAFIARLYLGIEATSCQAERNFSARSHLIGQLRCKILPSKFERTMFIRLN 396
[Close]
BLAST of mRNA_P-littoralis_Contig1387.1.1 vs. uniprot
Match: A0A6H5JQI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQI6_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 7.520e-21
Identity = 45/53 (84.91%), Postives = 48/53 (90.57%), Query Frame = 1 
Query:    1 MPYLAFIARLYLGIEATSCQAERNFSALAHLIGHLRCNMLPSKVERMMFIRLN 159
            MPYLAFIARL+LGIEATSCQAERNFSALAHLIG L CNML  +VERMM +RLN
Sbjct:  551 MPYLAFIARLHLGIEATSCQAERNFSALAHLIGDLCCNMLSHRVERMMLVRLN 603
[Close]
BLAST of mRNA_P-littoralis_Contig1387.1.1 vs. uniprot
Match: A0A6H5KAN7_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAN7_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 1.760e-17
Identity = 40/53 (75.47%), Postives = 47/53 (88.68%), Query Frame = 1 
Query:    1 MPYLAFIARLYLGIEATSCQAERNFSALAHLIGHLRCNMLPSKVERMMFIRLN 159
            +P+LA IARL+ GIE+TSCQAERNFSALA LIG LR +MLP KVER+MF+RLN
Sbjct:  411 LPHLALIARLFHGIESTSCQAERNFSALAFLIGSLRSSMLPGKVERLMFLRLN 463
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1387.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A6H5JTB8_9PHAE7.260e-2698.11Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JGG8_9PHAE7.500e-2698.11Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ec... [more]
A0A6H5KJT6_9PHAE5.140e-2488.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXV5_9PHAE1.790e-2390.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRT6_9PHAE7.060e-2388.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L7P7_9PHAE8.390e-2384.91Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KDJ6_9PHAE2.180e-2290.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAS2_9PHAE5.570e-2286.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQI6_9PHAE7.520e-2184.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAN7_9PHAE1.760e-1775.47Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1387contigP-littoralis_Contig1387:4035..4193 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog400682.PAC_15725361
PFAMsDUF659,Dimer_Tnp_hAT,zf-BED
Model size159
Max annot lvl33208|Metazoa
Hectar predicted targeting categorysignal peptide
Exons1
Evalue6.01e-05
EggNOG OGsKOG1121@1|root,KOG1121@2759|Eukaryota,39RW9@33154|Opisthokonta,3BH13@33208|Metazoa
DescriptionRNA polymerase II regulatory region DNA binding
Cds size159
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789640.0291677-CDS-P-littoralis_Contig1387:4034..41931680789640.0291677-CDS-P-littoralis_Contig1387:4034..4193Pylaiella littoralis U1_48CDSP-littoralis_Contig1387 4035..4193 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1387.1.1prot_P-littoralis_Contig1387.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1387 4035..4193 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1387.1.1

>prot_P-littoralis_Contig1387.1.1 ID=prot_P-littoralis_Contig1387.1.1|Name=mRNA_P-littoralis_Contig1387.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=53bp
MPYLAFIARLYLGIEATSCQAERNFSALAHLIGHLRCNMLPSKVERMMFI
RLN
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mRNA from alignment at P-littoralis_Contig1387:4035..4193+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1387.1.1 ID=mRNA_P-littoralis_Contig1387.1.1|Name=mRNA_P-littoralis_Contig1387.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=159bp|location=Sequence derived from alignment at P-littoralis_Contig1387:4035..4193+ (Pylaiella littoralis U1_48)
ATGCCCTACCTAGCGTTCATCGCTCGGTTGTACCTCGGGATCGAGGCCAC
CAGCTGTCAGGCCGAACGCAATTTCTCAGCGCTCGCCCACCTGATTGGCC
ACCTACGCTGCAACATGCTTCCAAGCAAGGTGGAGCGCATGATGTTCATC
AGGCTGAAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1387:4035..4193+

>mRNA_P-littoralis_Contig1387.1.1 ID=mRNA_P-littoralis_Contig1387.1.1|Name=mRNA_P-littoralis_Contig1387.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=159bp|location=Sequence derived from alignment at P-littoralis_Contig1387:4035..4193+ (Pylaiella littoralis U1_48)
ATGCCCTACCTAGCGTTCATCGCTCGGTTGTACCTCGGGATCGAGGCCAC
CAGCTGTCAGGCCGAACGCAATTTCTCAGCGCTCGCCCACCTGATTGGCC
ACCTACGCTGCAACATGCTTCCAAGCAAGGTGGAGCGCATGATGTTCATC
AGGCTGAAC
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