mRNA_P-littoralis_Contig1385.6.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1385.6.1
Unique NamemRNA_P-littoralis_Contig1385.6.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1385.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1385contigP-littoralis_Contig1385:22654..23640 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size254
Hectar predicted targeting categoryother localisation
Exons3
Cds size252
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789639.9309604-CDS-P-littoralis_Contig1385:22653..227341680789639.9309604-CDS-P-littoralis_Contig1385:22653..22734Pylaiella littoralis U1_48CDSP-littoralis_Contig1385 22654..22734 -
1680789639.9409962-CDS-P-littoralis_Contig1385:23123..231831680789639.9409962-CDS-P-littoralis_Contig1385:23123..23183Pylaiella littoralis U1_48CDSP-littoralis_Contig1385 23124..23183 -
1680789639.952821-CDS-P-littoralis_Contig1385:23529..236401680789639.952821-CDS-P-littoralis_Contig1385:23529..23640Pylaiella littoralis U1_48CDSP-littoralis_Contig1385 23530..23640 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1385.6.1prot_P-littoralis_Contig1385.6.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1385 22654..23640 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1385.6.1

>prot_P-littoralis_Contig1385.6.1 ID=prot_P-littoralis_Contig1385.6.1|Name=mRNA_P-littoralis_Contig1385.6.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=84bp
MIFNYLGIIEEILTRKSAANSRAKDVSVPDVVNVYAKAPFKSVPSHTTVR
EYLRICSRNRSSDSVSVVCHGTLPAGIPADTTPQ
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mRNA from alignment at P-littoralis_Contig1385:22654..23640-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1385.6.1 ID=mRNA_P-littoralis_Contig1385.6.1|Name=mRNA_P-littoralis_Contig1385.6.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=987bp|location=Sequence derived from alignment at P-littoralis_Contig1385:22654..23640- (Pylaiella littoralis U1_48)
ATGATTTTCAACTACCTTGGCATAATCGAGGAGATCTTGACCCGGAAGTC
CGCCGCCAACAGCAGGGCGAAAGATGTCAGCGTTCCCGACGTCGTAAACG
TGTACGCAAAGGTGAGCGTTCTCCGTTCTGTATTTGGTGGAATTACCTCC
CATTAGACTATGTGTTATCATGTTACCTCCTCCTCGCCTCATTTGGTTGC
GCGATTGGAACAGACAAACGGCAGGTGGGGGCAGCGATCAGGTTAACATG
CATGTCCCGCCAAACTTGATGAAACTCGACCACCACAAGTTTTTCTATTC
CGTGGAACAAAGCACTCGTGTGTCGTACTCGCCACCCTGCTCCCGCGTTT
GTCAGCCAATGTCTTTCTCGTGTTGGGGAAGAGACTAGATAGACATCTAC
CATTATCATCTATCAGTATTGTGACCAAGAGTACGTTTCTCACCCATCTA
ATTTCAGGCTCCGTTCAAGTCGGTGCCCAGTCACACCACGGTCCGGGAGT
ACCTCCGCATCTGCTCGGTGATAAGCACCGAGGCTCTAAAGGCGTTGAGG
TCGATGGAGGAACAAGGTCTCCATGGGTATCGTGCGTGCCCGACGCGTTC
ATGTGGCCCATTCTTTGTGGTGAATTATTCTTTATTTTTCGGACCTCCGC
TACCTTCTCCCACTGACGTGACGTATTTTGCGCCGTGTTTTGTTTCACAT
ACGTATGCCCCCGCTGCCTTGTGAACGCGGGTGTTATTTGTTATTGACCG
CGTATTTCCTAAGGTCAAACGACGTCTTCGACAAAAACTTTTACCTCGGG
GGCGGAATATTTTCTCTGTTCAAATCGTACAGGAGTGATGGTACGACGGA
TGCATGTAAACTAGCTCATGAACTTATTCTACCGCCGGCTTTCCGTACCT
TCACAGCGCAACCGGTCCAGTGACTCCGTATCTGTCGTCTGCCACGGTAC
GCTGCCGGCGGGCATCCCGGCCGACACGACTCCACAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1385:22654..23640-

>mRNA_P-littoralis_Contig1385.6.1 ID=mRNA_P-littoralis_Contig1385.6.1|Name=mRNA_P-littoralis_Contig1385.6.1|organism=Pylaiella littoralis U1_48|type=CDS|length=252bp|location=Sequence derived from alignment at P-littoralis_Contig1385:22654..23640- (Pylaiella littoralis U1_48)
ATGATTTTCAACTACCTTGGCATAATCGAGGAGATCTTGACCCGGAAGTC
CGCCGCCAACAGCAGGGCGAAAGATGTCAGCGTTCCCGACGTCGTAAACG
TGTACGCAAAGGCTCCGTTCAAGTCGGTGCCCAGTCACACCACGGTCCGG
GAGTACCTCCGCATCTGCTCGCGCAACCGGTCCAGTGACTCCGTATCTGT
CGTCTGCCACGGTACGCTGCCGGCGGGCATCCCGGCCGACACGACTCCAC
AA
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