mRNA_P-littoralis_Contig1385.2.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1385.2.1
Unique NamemRNA_P-littoralis_Contig1385.2.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1385.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1385contigP-littoralis_Contig1385:2283..3173 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size168
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size138
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789639.8191214-CDS-P-littoralis_Contig1385:2282..23651680789639.8191214-CDS-P-littoralis_Contig1385:2282..2365Pylaiella littoralis U1_48CDSP-littoralis_Contig1385 2283..2365 -
1680789639.8294823-CDS-P-littoralis_Contig1385:3088..31431680789639.8294823-CDS-P-littoralis_Contig1385:3088..3143Pylaiella littoralis U1_48CDSP-littoralis_Contig1385 3089..3143 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789639.842666-UTR-P-littoralis_Contig1385:3143..31731680789639.842666-UTR-P-littoralis_Contig1385:3143..3173Pylaiella littoralis U1_48UTRP-littoralis_Contig1385 3144..3173 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1385.2.1prot_P-littoralis_Contig1385.2.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1385 2283..3143 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1385.2.1

>prot_P-littoralis_Contig1385.2.1 ID=prot_P-littoralis_Contig1385.2.1|Name=mRNA_P-littoralis_Contig1385.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=46bp
MGLDPPRRRPRPLSVPRVVLEKSARPPPISRHPRRAPGAVPPGGSR
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mRNA from alignment at P-littoralis_Contig1385:2283..3173-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1385.2.1 ID=mRNA_P-littoralis_Contig1385.2.1|Name=mRNA_P-littoralis_Contig1385.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=891bp|location=Sequence derived from alignment at P-littoralis_Contig1385:2283..3173- (Pylaiella littoralis U1_48)
AAGGTCTCCTTCCAGCAGAGGAACCTGAGGATGGGACTGGACCCACCCAG
GAGGCGGCCCCGCCCGCTATCTGTACCCCGGGTAGGTGGGCAAATACCTC
ATGCTTGTACTGCTGTACGAATTACGACATTGTCTCGTTGTTCAACTGCT
GTTTGCGCAATTTTAATTTTTGTAAAGATGACGAAGAACGGTTTGGTAGT
TTTTTTTAATTTTCTTAGAAGTGTCACTTTTATTTAACGACAGCAACACA
AGTTCCCGCAGAGTTAAAGCTGACCTCCAGGCCGAGGTAGCAGTGTTGTT
CGCTCACATGTGTGTACGTGGCGCTTTTCGTTTTCAGTGGGAGGCTTGTG
TTGTTGACCCCGATCACTCCTCCCATCGTAAATAAATATGAATCGTAAAA
AAATACGCAGGAGTCGCGAGGCAGAGGCCTCATACCCGTTCCCACGCCCC
GGCGTTTCGAACTGTCCCGTCCTTTTCCCCTTCTGAATAAGGTTGTGTAG
CATGACCTTGTTTATTTGAAATCATGTAGACATTAGAGAGATTCGAATTC
AAAAAAGTTCAGAAATAAGCAGTCAGAAATAAGGTTAAGCCGGCATTCCG
GGGAACGGTCTTGACAGTCCCGTAGTTCTGAAGAGCTAGACAGTTCCGGC
TTATAGGAAACTTCTAAGTTGTTCTAAAATTTCCTGCGCTCCGGCCTTAT
TTCTATTTCTGAGCCACTATTTCCGAACTTTCGAGCTCCTATCCGAAACT
CCTTATTACCTCGACTAACTTTTCGTTTACCTGTGCCTGCTTGCGAAACG
TCTCTTAGTGCTGGAAAAAAGCGCTCGTCCACCACCGATCTCACGCCATC
CCCGCCGAGCACCAGGCGCAGTTCCTCCAGGAGGAAGCAGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1385:2283..3173-

>mRNA_P-littoralis_Contig1385.2.1 ID=mRNA_P-littoralis_Contig1385.2.1|Name=mRNA_P-littoralis_Contig1385.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=138bp|location=Sequence derived from alignment at P-littoralis_Contig1385:2283..3173- (Pylaiella littoralis U1_48)
ATGGGACTGGACCCACCCAGGAGGCGGCCCCGCCCGCTATCTGTACCCCG
GGTAGTGCTGGAAAAAAGCGCTCGTCCACCACCGATCTCACGCCATCCCC
GCCGAGCACCAGGCGCAGTTCCTCCAGGAGGAAGCAGG
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